LOCUS GPR109B 5148 bp DNA linear PRI 20-NOV-2007 DEFINITION Homo sapiens G protein-coupled receptor 109B (GPR109B) gene, complete cds. ACCESSION GPR109B VERSION tmp KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5148) AUTHORS Rieder,M.J., Johanson,E.J., da Ponte,S.H., Stanaway,I.B., Ahearn,M.O., Bertucci,C.B., Wong,M.W., Yi,Q. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (20-NOV-2007) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA COMMENT To cite this work please use: SeattleSNPs. NHLBI HL66682 Program for Genomic Applications, UW-FHCRC, Seattle, WA (URL: http://pga.gs.washington.edu). FEATURES Location/Qualifiers source 1..5148 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" repeat_region 245..357 /rpt_family="L1" /rpt_type=dispersed repeat_region 368..660 /rpt_family="Alu" /rpt_type=dispersed misc_feature 370..641 /note="Region not scanned for variation" repeat_region 670..946 /rpt_family="ERV1" /rpt_type=dispersed variation 1019 /frequency="0.34" /replace="T" misc_feature 1099..1671 /note="Region not scanned for variation" gene 1723..3764 /gene="GPR109B" mRNA 1723..3764 /gene="GPR109B" /product="GPR109B" variation 1776 /gene="GPR109B" /frequency="0.26" /replace="C" CDS 1783..2946 /gene="GPR109B" /codon_start=1 /product="G protein-coupled receptor 109B" /translation="MNRHHLQDHFLEIDKKNCCVFRDDFIAKVLPPVLGLEFIFGLLG NGLALWIFCFHLKSWKSSRIFLFNLAVADFLLIICLPFVMDYYVRRSDWKFGDIPCRL VLFMFAMNRQGSIIFLTVVAVDRYFRVVHPHHALNKISNWTAAIISCLLWGITVGLTV HLLKKKLLIQNGPANVCISFSICHTFRWHEAMFLLEFLLPLGIILFCSARIIWSLRQR QMDRHAKIKRAITFIMVVAIVFVICFLPSVVVRIRIFWLLHTSGTQNCEVYRSVDLAF FITLSFTYMNSMLDPVVYYFSSPSFPNFFSTLINRCLQRKMTGEPDNNRSTSVELTGD PNKTRGAPEALMANSGEPWSPSYLGPTSNNHSKKGHCHQEPASLEKQLGCCIE" variation 1995 /gene="GPR109B" /frequency="0.01" /replace="G" variation 2028 /gene="GPR109B" /frequency="0.13" /replace="T" variation 2130 /gene="GPR109B" /frequency="0.48" /replace="A" variation 2256 /gene="GPR109B" /frequency="0.01" /replace="G" variation 2299 /gene="GPR109B" /frequency="0.48" /replace="A" variation 2374 /gene="GPR109B" /frequency="0.48" /replace="T" variation 2540 /gene="GPR109B" /frequency="0.33" /replace="A" variation 2733 /gene="GPR109B" /frequency="0.30" /replace="A" variation 2820 /gene="GPR109B" /frequency="0.04" /replace="C" variation 2830 /gene="GPR109B" /frequency="0.02" /replace="A" variation 2968 /gene="GPR109B" /frequency="0.48" /replace="A" variation 2997 /gene="GPR109B" /frequency="0.06" /replace="G" variation 2998 /gene="GPR109B" /frequency="0.06" /replace="C" variation 3021 /gene="GPR109B" /frequency="0.01" /replace="G" variation 3225 /gene="GPR109B" /frequency="0.45" /replace="A" variation 3241 /gene="GPR109B" /frequency="0.46" /replace="G" variation 3312 /gene="GPR109B" /frequency="0.48" /replace="T" variation 3322 /gene="GPR109B" /frequency="0.27" /replace="G" variation 3391 /gene="GPR109B" /frequency="0.26" /replace="G" variation 3590 /gene="GPR109B" /frequency="0.32" /replace="A" variation 3657 /gene="GPR109B" /frequency="0.26" /replace="T" variation 3725 /gene="GPR109B" /frequency="0.14" /replace="G" variation 3740 /gene="GPR109B" /frequency="0.45" /replace="C" repeat_region 4077..4390 /rpt_family="Alu" /rpt_type=dispersed variation 4146 /frequency="0.23" /replace="C" variation 4235 /frequency="0.23" /replace="T" variation 4295 /frequency="0.10" /replace="T" misc_feature 4716..4938 /note="Region not scanned for variation" repeat_region 4936..5146 /rpt_family="Alu" /rpt_type=dispersed BASE COUNT 1378 a 1165 c 1224 g 1381 t ORIGIN 1 atttacatta tataactcaa agtagaagca acatagttta gaagtctcct gcatggaaga 61 attcataaga ccaaaatatt aaagggagaa aacattctat aggatgacac ccaatcgcac 121 tgacaagcag agaaacaatg tgtgcaatgg tgtcccgcta caaggcaggg ttccatgtcc 181 tcttaggtcc tgtcactcta agtttaattt tacaaaaatg ggggctttaa aaatatcaca 241 tacttagtgg gggaggtttt gcgtgtgtgg agacagagtg cacaggaccg tccgtacttt 301 ctgctcaatt ttgctgtgaa tctaaaactg ccctaaaaaa taaagttcat taaaaaaaaa 361 aaatcacggc caggcgcagt ggctcacgcc tgtaatcaca gcactttggg agaccgaggc 421 gggtggatca caaggtcagg agttcgagac cagcctggcc aacacagtga aacctcgtct 481 ttactaaaaa tacaaaaaat tagctgggcg tggtggcgca cgcctgtagt cccagatact 541 caggaggctg aggcagaaga attgcttgaa cctgggaggc ggaggttgca gtgagctgag 601 attgttccac cgttctccag cctgggtgac agagtgagac tctgtctcaa aaaaaaaaaa 661 tcacatccta aggtcccaag gacataaaac aagttagaga cctcatccag ttttttgttt 721 gtttcaggga cctgcaacca actttcttac tgaccagttt cctgggctgt ctagaacaga 781 cagcttatgg ggtactaacc ccatgctcta tcctaaggta cccctcttca tgcagagcga 841 cacagaaaaa caaatttgta gcacaaagta cacccgattt gctacagctt acaactagcc 901 tcatgaatcc ttttctcatt aattcaaagt ttgcaaaaaa aagaaatcac atacttaaat 961 cacttgagca cagaagcata tcaaaatcta atataaacaa acaaaaaacc caacttatgt 1021 taacatgcca ctgaaactgg gctcaagttt tcaaacatct tatgaaatat tacactctcc 1081 agcaggcttt tttttttttc ctaactggag atgaatggca gagttctgat atggaaaagc 1141 actccatgtt tgtacagaaa ggtagcatag gaaaagtggt caaattcaac cagtctgtcc 1201 tcatcaaaca ggcaactact gtcttctcag catttccaaa agaaatcata tgcctgctac 1261 tgtttatgtc atatgcctgt taatttttca tgctaattct tagtgtttct ggaaaacctc 1321 actgtttggc accaaaaatt attattgcta ttgttgttgt tttgttaatt atgtcagcca 1381 agcagatgac ggtgaattaa ttctgcaacg ttgagtactc agttggcata caagcaccca 1441 gccttccaaa gggatgtcct tcatgtttca ctgattttcg aatgacagtc agcttgccta 1501 aacttatcct ttacatttaa gacatttggt gggttcctgt atgcccaggg gatttttatt 1561 atttgtttat gcaaacagca ggttgcataa gagccttgct ggcttttttt tttttttttt 1621 tagagatttc gtagtttcct gataaccatt cagtcatcta tttcaacacc ctgacatgac 1681 ataaaggcag gcacggaacc acacgttcac catacagaca cacgccactt tgctggagca 1741 ttcactaggc gaggcgctcc atcggactca ctagctgcac tcatgaatcg gcaccatctg 1801 caggatcact ttctggaaat agacaagaag aactgctgtg tgttccgaga tgacttcatt 1861 gccaaggtgt tgccgccggt gttggggctg gagtttatct ttgggcttct gggcaatggc 1921 cttgccctgt ggattttctg tttccacctc aagtcctgga aatccagccg gattttcctg 1981 ttcaacctgg cagtagctga ctttctactg atcatctgcc tgccgttcgt gatggactac 2041 tatgtgcggc gttcagactg gaagtttggg gacatccctt gccggctggt gctcttcatg 2101 tttgccatga accgccaggg cagcatcatc ttcctcacgg tggtggcggt agacaggtat 2161 ttccgggtgg tccatcccca ccacgccctg aacaagatct ccaattggac agcagccatc 2221 atctcttgcc ttctgtgggg catcactgtt ggcctaacag tccacctcct gaagaagaag 2281 ttgctgatcc agaatggccc tgcaaatgtg tgcatcagct tcagcatctg ccataccttc 2341 cggtggcacg aagctatgtt cctcctggag ttcctcctgc ccctgggcat catcctgttc 2401 tgctcagcca gaattatctg gagcctgcgg cagagacaaa tggaccggca tgccaagatc 2461 aagagagcca tcaccttcat catggtggtg gccatcgtct ttgtcatctg cttccttccc 2521 agcgtggttg tgcggatccg catcttctgg ctcctgcaca cttcgggcac gcagaattgt 2581 gaagtgtacc gctcggtgga cctggcgttc tttatcactc tcagcttcac ctacatgaac 2641 agcatgctgg accccgtggt gtactacttc tccagcccat cctttcccaa cttcttctcc 2701 actttgatca accgctgcct ccagaggaag atgacaggtg agccagataa taaccgcagc 2761 acgagcgtcg agctcacagg ggaccccaac aaaaccagag gcgctccaga ggcgttaatg 2821 gccaactccg gtgagccatg gagcccctct tatctgggcc caacctcaaa taaccattcc 2881 aagaagggac attgtcacca agaaccagca tctctggaga aacagttggg ctgttgcatc 2941 gagtaatgtc actggactcg gcctaaggtt tcctggaact tccagattca gagaatctga 3001 tttagggaaa ctgtggcaga tgagtgggag actggttgca aggtgtgacc gcaggaatcc 3061 tggaggaaca gagagtaaag cttctaggca tctgaaactt gcttcatctc tgacgctcgc 3121 aggactgaag atgggcaaat tgtaggcgtt tctgctgagc agagttggag ccagagatct 3181 acttgtgact tgttggcctt cttcccacat ctgcctcaga ctgggggggg ctcagctcct 3241 cgggtgatat ctagcctgct tgtgagctct agcagggata aggagagctg agattggagg 3301 gaattgtgtt gctcctggag gaagcccagg catcattaaa caagccagta ggtcacctgg 3361 cttccgtgga ccaattcatc tttcagacaa tctttagcag aaatggactc agggaagaga 3421 ctcacatgct ttggttagta tctgtgtttc cggtgggtgt aataggggat tagccccaga 3481 agggactgag ctaaacagtg ttattatggg aaaggaaatg gcattgctgc tttcaaccag 3541 cgactaatgc aatccattcc tctcttgttt atagtaatct aagggttgag cagttaaaac 3601 ggcttcagga tagaaagctg tttcccacct gtttgctttt accattaaaa gggaaacgtg 3661 cctctgcccc acgggtagag gggtgcacgt tcctcctggt tccttcgctt gtgtttctgt 3721 acttaccaaa aatctaccat ttcaataaat tttgatagga gacagtctgg cgttgctata 3781 tctgggttat ggttcacaga aatggacttc ttacttaagc agagaccttt atgggttgtt 3841 aactttgtcc tggtagaaaa ctactccaca ctgcaaagta agaaagagac acagacactg 3901 agctacatca tgaaacaact aagcagaaat tacacctgtg tctaaacaaa gatagaaaga 3961 gctgggatta aaaataattt ggaaggatag tacagatagg attgcaagag cacttacatt 4021 ttattagagt ttggtgaata ttgctcttca tatttgtgca ttaaaaaggg aatcaaggcc 4081 aggtgcaatg gttcatgcct gtaatcccag cactttgggg gagccaaggc gggcagatca 4141 cctgaagtaa ggagtttgag accagcctgg acaaaatggt gaaaccccac ttctactaaa 4201 aatacaagaa aaattagcca ggcatggtgg cggccgcttg tagtcccagc tactgggaag 4261 gctgggagaa gaagaattgc ttgaacccgg gaggcggagg ttgcagtgag ccgaggtggt 4321 gtgcctgcac tccagcctgg gggacagagc aagacttcat ctcaaataat aataataaat 4381 aatataaaaa gggaatcaag ccaggcagat atttttccat aggaggggga agagcgagct 4441 tcctatggaa tggtttcagt tcccaattcg gagaaggaaa ggagatgtac tggtttgagt 4501 ctgtgatcag tccaagtttc tgttacgctt tcatttctaa ctctgtcagt ccttgattat 4561 ttggcaagac gaggcttgct tcaacctcct gacatgaaca cagataagga atttagagac 4621 aggctcccag ctctgggtga atgacagtaa atgaagaaag gtggatgctc tggaattacc 4681 tctgtgcttt cagagcagtt ggcttgtctg tatcaccaag caatgtacag gtaaaaagcc 4741 aaaagcaagg atcaccttaa agaggaagag atgtcaggga tgagctcaga ggaaaatagg 4801 gattccccag cctcggaggc atgagtcagt ggggagcctc gttgtgaaac gcggattcgt 4861 tcaagggatg aggtggtttg gggtgtttgg acctccacag ctcacattca ttcactgatt 4921 caggcattcc atcagttctt tgtttttttt ttttttttga gaccgagtct cactctgtca 4981 tctaggctgg agtgcagtgg tgtgatctgg gttcactgca gcctctgcct cctgggttca 5041 agtgattctc ctacctcagc ctccccagta gctgggatta caggtgtgca ccaccatgcc 5101 tggctaattt ttgtattttt agtagagatg ggctttcgct gtgttgcc //