LOCUS GPR109A 5619 bp DNA linear PRI 24-MAY-2007 DEFINITION Homo sapiens GPR109A G protein-coupled receptor 109A (GPR109A) gene, complete cds. ACCESSION GPR109A VERSION tmp KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5619) AUTHORS Rieder,M.J., Johanson,E.J., da Ponte,S.H., Hastings,N.C., Ahearn,M.O., Bertucci,C.B., Wong,M.W., Yi,Q. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (24-MAY-2007) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA COMMENT To cite this work please use: SeattleSNPs. NHLBI HL66682 Program for Genomic Applications, UW-FHCRC, Seattle, WA (URL: http://pga.gs.washington.edu). FEATURES Location/Qualifiers source 1..5619 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" variation 101 /frequency="0.45" /replace="T" repeat_region 225..337 /rpt_family="L1" /rpt_type=dispersed variation 231 /frequency="0.11" /replace="A" variation 315 /frequency="0.03" /replace="C" variation 340 /frequency="0.99" /replace="" repeat_region 345..637 /rpt_family="Alu" /rpt_type=dispersed variation 393 /frequency="0.26" /replace="A" variation 533 /frequency="0.05" /replace="A" misc_feature 631..1074 /note="Region not scanned for variation" repeat_region 647..924 /rpt_family="ERV1" /rpt_type=dispersed variation 1126 /frequency="0.26" /replace="A" variation 1237 /frequency="0.41" /replace="C" variation 1618 /frequency="0.01" /replace="T" variation 1675 /frequency="0.02" /replace="A" gene 1697..3761 /gene="GPR109A" mRNA 1697..3761 /gene="GPR109A" /product="GPR109A" CDS 1771..2862 /gene="GPR109A" /codon_start=1 /product="GPR109A G protein-coupled receptor 109A" /translation="MNRHHLQDHFLEIDKKNCCVFRDDFIVKVLPPVLGLEFIFGLLG NGLALWIFCFHLKSWKSSRIFLFNLAVADFLLIICLPFLMDNYVRRWDWKFGDIPCRL MLFMLAMNRQGSIIFLTVVAVDRYFRVVHPHHALNKISNRTAAIISCLLWGITIGLTV HLLKKKMPIQNGGANLCSSFSICHTFQWHEAMFLLEFFLPLGIILFCSARIIWSLRQR QMDRHAKIKRAITFIMVVAIVFVICFLPSVVVRIRIFWLLHTSGTQNCEVYRSVDLAF FITLSFTYMNSMLDPVVYYFSSPSFPNFFSTLINRCLQRKMTGEPDNNRSTSVELTGD PNKTRGAPEALMANSGEPWSPSYLGPTSP" variation 2328 /gene="GPR109A" /frequency="0.02" /replace="T" variation 2701 /gene="GPR109A" /frequency="0.10" /replace="T" variation 2721 /gene="GPR109A" /frequency="0.23" /replace="A" variation 2751 /gene="GPR109A" /frequency="0.01" /replace="A" variation 2990 /gene="GPR109A" /frequency="0.25" /replace="C" variation 2991 /gene="GPR109A" /frequency="0.25" /replace="T" variation 3005 /gene="GPR109A" /frequency="0.26" /replace="T" variation 3062 /gene="GPR109A" /frequency="0.26" /replace="C" variation 3143 /gene="GPR109A" /frequency="0.26" /replace="G" variation 3200 /gene="GPR109A" /frequency="0.01" /replace="T" variation 3220 /gene="GPR109A" /frequency="0.26" /replace="G" variation 3386 /gene="GPR109A" /frequency="0.01" /replace="T" variation 3537 /gene="GPR109A" /frequency="0.01" /replace="C" variation 3595 /gene="GPR109A" /frequency="0.05" /replace="T" variation 3710 /gene="GPR109A" /frequency="0.03" /replace="A" variation 3842 /frequency="0.32" /replace="C" variation 4000 /frequency="0.33" /replace="C" misc_feature 4047..4479 /note="Region not scanned for variation" repeat_region 4074..4388 /rpt_family="Alu" /rpt_type=dispersed misc_feature 4538..4940 /note="Region not scanned for variation" repeat_region 4934..5238 /rpt_family="Alu" /rpt_type=dispersed variation 4958 /frequency="0.03" /replace="C" variation 4975 /frequency="0.26" /replace="C" variation 5051 /frequency="0.46" /replace="A" variation 5139 /frequency="0.01" /replace="G" repeat_region 5239..5616 /rpt_family="L2" /rpt_type=dispersed variation 5266 /frequency="0.01" /replace="G" variation 5284 /frequency="0.01" /replace="A" variation 5366 /frequency="0.26" /replace="G" misc_feature 5501..5618 /note="Region not scanned for variation" BASE COUNT 1489 a 1271 c 1386 g 1473 t ORIGIN 1 agtagaagga acacaattta gaaacctcct gcatggaaga attcataaga ccaaaatatt 61 aaagggagaa aacattctat aggatgacac ccaatcgcac cgacaagcag agaaacaatg 121 tgtgcaatgg tgtcccgcta caaggcgggg ttccatgtcc tcttaggtcc tgtcactcta 181 agtttaattt tacaaaaatg ggggctttga aaatatcaca tacttagtgg gggaggtttt 241 gcgtgtgtgg agacagagtg cacaggaccg tccgtacttt ctgctccatt ttgctgtgaa 301 tctaacactg ccccaaaaaa taaagttcat taaaaaaaaa tcacggccag gcgcggtggc 361 tcacgcctgt aatcccagca ctttgggagg ccgaggcaga cggatcacaa ggtcaggagt 421 ttgagaccag cctggccaac acagtgaaac ctcgtcttta ctaaaaatac aaaaaattag 481 ctgggcgtgg tggcgcacgc ctgtagtccc agatactcag gaggctgagg cagaagaatt 541 gcttgaacct gggaggcgga ggttgcagtg agctgagatt gttccaccgt tctccagcct 601 gggtgacaga gtgagactct gtctcaaaaa aaaaaaatca catcctaagg tcccaaggac 661 ataaaacaag ttagagacct catccagttt tttgtttgtt tcagggacct gcaaccaact 721 ttcttactga ccagtttcct gggctgtcta gaacagacag cttatggggt actaacccca 781 tgctctatcc taaggtaccc ctcttcatgc agagcgacac agaaaaacaa atttgtagca 841 caaagtacac ccgatttgct acagcttacg actagcctca tgaatccttt ttctcattaa 901 ttcaaagttt gcaaaaaaaa gaaatcacat acttaaaaat aaatcacttg agcacagaag 961 catatcaaaa tctaatataa acaaacaaaa aacccaactt atgttaacat gccactgaaa 1021 ctgggctcaa gttttcaaat gtcttatgaa atattacact ctccagcagg ctattttttt 1081 tttcctaact ggagatgaat ggcagagttc tgatatggaa aagcactcca tgtttgtaca 1141 gaaaggtagc ataggaaaag tggtcaaatt caaccagtct gtcctcatca aacaggcaac 1201 tactgtcttc tcagcatttc caaaagaaat catatgtctg ctactgttta tgtcatatgc 1261 ctgttaattt ttcatgctaa ttcttagtgt ttctggaaaa cctcactgtt tggcaccaaa 1321 aattgttatt gctattgttg ttgttttgtt aattatgtca gccaagcaga tgacggtgaa 1381 ttaattctgc aacgttgagt actcagttgg catacaagca cccagccttc caaagggatg 1441 tccttcatgt ttcactgatt ttcgaatgac agtcggcttg cctaaactta tcctttacat 1501 ttaagacatt ttgtgggttc ccgtctgccc aggggattct tattacttgt ttatgcaaac 1561 agcaggttgc ataagagcct tgctggcttt tttttttttt ttttttttta gagatttcgt 1621 agtttcctgg taaccattca gtcatctatt tcaacaccct gacatgacat aaaggcaggc 1681 gtggaaccac acgttcacca cacagacaca cacctccttg ctggagcatt cactaggcga 1741 ggcgctccat cggactcact agccgcactc atgaatcggc accatctgca ggatcacttt 1801 ctggaaatag acaagaagaa ctgctgtgtg ttccgagatg acttcattgt caaggtgttg 1861 ccgccggtgt tggggctgga gtttatcttc gggcttctgg gcaatggcct tgccctgtgg 1921 attttctgtt tccacctcaa gtcctggaaa tccagccgga ttttcctgtt caacctggca 1981 gtggctgact ttctactgat catctgcctg cccttcctga tggacaacta tgtgaggcgt 2041 tgggactgga agtttgggga catcccttgc cggctgatgc tcttcatgtt ggctatgaac 2101 cgccagggca gcatcatctt cctcacggtg gtggcggtag acaggtattt ccgggtggtc 2161 catccccacc acgccctgaa caagatctcc aatcggacag cagccatcat ctcttgcctt 2221 ctgtggggca tcactattgg cctgacagtc cacctcctga agaagaagat gccgatccag 2281 aatggcggtg caaatttgtg cagcagcttc agcatctgcc ataccttcca gtggcacgaa 2341 gccatgttcc tcctggagtt cttcctgccc ctgggcatca tcctgttctg ctcagccaga 2401 attatctgga gcctgcggca gagacaaatg gaccggcatg ccaagatcaa gagagccatc 2461 accttcatca tggtggtggc catcgtcttt gtcatctgct tccttcccag cgtggttgtg 2521 cggatccgca tcttctggct cctgcacact tcgggcacgc agaattgtga agtgtaccgc 2581 tcggtggacc tggcgttctt tatcactctc agcttcacct acatgaacag catgctggac 2641 cccgtggtgt actacttctc cagcccatcc tttcccaact tcttctccac tttgatcaac 2701 cgctgcctcc agaggaagat gacaggtgag ccagataata accgcagcac gagcgtcgag 2761 ctcacagggg accccaacaa aaccagaggc gctccagagg cgttaatggc caactccggt 2821 gagccatgga gcccctctta tctgggccca acctctcctt aaataaccat gccaagaagg 2881 gacattgtca ccaagaacca ggatctctgg agaaacagtt gggctgttgc atcgagtaat 2941 gtcactggac tcggcctaag gtttcctgga acttccagat tcagagaatg cgatttaggg 3001 aaacggtggc agatgagtgg gagactggtt gcaaggtgtg accgcaggaa tcctggagga 3061 atagagagta aagcttctag gcatctgaaa cttttgcttc atctctgacg ctcgcaggac 3121 tgaagatggg caaattgtag gcatttctgc tgagcagagt tggagccaga gatctacttg 3181 tgacttgttg gccttcttcc cacatctgcc tcagactgga gggggctcag ctcctggggt 3241 gatatctagc ctgcttgtga gctctagcag ggataaggag agctgagatt ggagggaatt 3301 gtgttgctcc tggagggagc ccaggcatca ttaaacaagc cagtaggtca cctggcttcc 3361 gtggaccaat tcatctttca gacaagcttt agcagaaatg gactcaggga agagactcac 3421 acgctttggt taatatctgt gtttccggtg ggtgtaatag gggattagcc ccagaaggga 3481 ctgagctaaa cagtgttatt atgggaaagg aaatggcatt gctgctttca accagcgact 3541 aatgcaatcc attcctctct tgtttatagt aatctaaggg ttgggcagtt aaaacggctt 3601 caggatagaa agctgtttcc cacctctgtt tgcttttaac attaaaaggg aaatgtgcct 3661 ctgccccaca gttagagggg tgcacgttcc tcctggttcc ttcgcttgtg tttctgtact 3721 taccaaaaat ctaccatttc aataaatttt gataggagac agtctggcgt tgctatatct 3781 gggttatggt tcacagaaat ggacttctta cttaagcaga gacctttatg ggttgttaac 3841 tatgtcctgg tagaaaacta ctccacactg caaagtaaga aagagacaca gacactgagc 3901 tacatcatga aacaactaag cagaaattac acctgtgtct aaacaaagat agaaagagct 3961 gggattaaaa ataatttgga aggatagtac agataggatt gcaagagcac ttacatttta 4021 ttagagtttg gtgaatattg ctcttagtat ttgtgcatta aacagggaat caaggccagg 4081 tgcaatggtt catgcctgta atcccagcac tttgagggga ccgaggtggg cagatcaccc 4141 tgaggtcagg agtttgagac cagcctggac aacatggcga aaccccactt ctactaaaaa 4201 tacaagaaaa attagccagg catggtggcg gccgcttgta gtcccagcta ctgggaaggc 4261 tgggggaaga agaattgctt gaacccagga ggcggaggtt gcagtgagcc gaggtggtgt 4321 gcctgcactc cagcctgggg gacagagcaa gacttcatct caaataataa taataaataa 4381 tataaaaagg gaatcaagcc aggcagatat ttttccatag gagggggaag agcgagcttc 4441 ctatggaatg gtttcagttc ccaattcaga gaaggaaagg agatgtactg gtttgagtct 4501 gtgatcagtc caagtttctg ttacgctttc atttctaact ctgtcagtcc ttgattattt 4561 ggcaagacga ggcttgcttc aacctcctga catgaacaca gataaggaat ttagagacag 4621 gctcccagct ctgggtgaat gacagtaaat gaagaaaggt ggatgctctg gaattacctc 4681 tgtgctttca gagcagttgg cttgtctgta tcaccaagca atgtacaggt aaaaagccaa 4741 aagcaaggat caccttaaag aggaagagat gtcagggatg agctcagagg aaaataggga 4801 ttccccagcc tcggaggcat gagtcagtgg ggagcctcgt tgtgaaacgc ggattcgttc 4861 aagggatgag gtggtttggg gtgtttggac ctccacagct cacattcatt cactgattca 4921 ggcattccat cagttctttg tttttttttt ttttttgaga ccgagtctca ctctgtcatc 4981 taggctggag tgcagtggtg tgatctgggt tcactgcagc ctctgcctcc tgggttcaag 5041 tgattctcct gcctcagccc ccccagtagc tgggattaca ggtgtgcacc accatgcctg 5101 gctaattttt gtatttttag tagaggtggg gtctcgccat gttgcccagg ctggtcttga 5161 actcctgacc tcaggtgatc cacctgcctc agcctcccaa agtgctggga ttacaggtgt 5221 gagccactgt gcccagcctc attccatcag ttttatgtat taagcaccaa ctgtgtgcca 5281 ggcgctgttc tgggtggtgg agatagaaca agaaacaagg cagccacagt cctcttctca 5341 tcgagctgac ttttggagtg gggagacagg caggaataaa aaggagcctt ggggtggcta 5401 tgggtgtcat gactatggtg gagtgggaca atggggataa aaagtaaccg gggctggggt 5461 gactgggatg gcttctatga ggcattgacc ctgagctgag ccatgaatga ctaaacagaa 5521 aagcaatgca aaagtctggg ggaaagacac gccaagcaga gggaatggta agtgcaaagg 5581 ccctgaggtg agaattaggt tggtgactgc gtgttcatt //