Site Genotype1 AD-pop ED-pop Total-pop Genotype2 AD-pop ED-pop Total-pop Genotype3 AD-pop ED-pop Total-pop AD-chi2 ED-chi2 Total-chi2 000212 AA 0 0 0 AG 1 0 1 GG 22 19 41 0.011 0.000 0.006 000242 AA 0 0 0 AC 2 0 2 CC 21 19 40 0.048 0.000 0.025 000258 GG 14 19 33 GT 5 0 5 TT 4 0 4 4.949 0.000 12.473 000642 CC 0 0 0 CG 2 0 2 GG 22 19 41 0.045 0.000 0.024 000682 AA 3 0 3 AG 8 9 17 GG 13 11 24 0.897 1.686 0.000 000898 CC 21 21 42 CT 3 0 3 TT 0 0 0 0.107 0.000 0.054 000904 CC 22 21 43 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 000991 GG 22 21 43 GT 1 0 1 TT 0 0 0 0.011 0.000 0.006 001543 AA 0 0 0 AG 1 0 1 GG 22 20 42 0.011 0.000 0.006 001851 AA 0 5 5 AG 8 10 18 GG 16 3 19 0.960 0.281 0.054 001965 AA 0 0 0 AC 1 0 1 CC 22 14 36 0.011 0.000 0.007 001995 AA 0 0 0 AC 1 0 1 CC 22 15 37 0.011 0.000 0.007 002042 CC 21 15 36 CT 3 0 3 TT 0 0 0 0.107 0.000 0.062 002044 CC 18 15 33 CT 4 0 4 TT 2 0 2 3.840 0.000 7.649 002053 CC 24 14 38 CT 0 0 0 TT 0 1 1 0.000 15.000 39.000 002544 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 002668 AA 8 0 8 AG 13 10 23 GG 3 13 16 0.421 1.775 0.003 002992 -- 22 23 45 +- 1 0 1 ++ 0 0 0 0.011 0.000 0.006 003043 CC 22 23 45 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 003125 CC 0 0 0 CT 2 0 2 TT 22 23 45 0.045 0.000 0.022 003203 CC 4 16 20 CT 12 7 19 TT 8 0 8 0.020 0.741 0.858 003505 CC 4 16 20 CT 12 7 19 TT 8 0 8 0.020 0.741 0.858 003661 CC 0 0 0 CT 6 7 13 TT 17 16 33 0.517 0.741 1.246 004113 AA 0 0 0 AG 1 0 1 GG 14 18 32 0.018 0.000 0.008 004281 CC 23 23 46 CG 1 0 1 GG 0 0 0 0.011 0.000 0.005 004307 AA 0 0 0 AG 0 3 3 GG 24 20 44 0.000 0.112 0.051 004347 AA 0 0 0 AG 0 1 1 GG 24 22 46 0.000 0.011 0.005 004532 CC 23 22 45 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 004581 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 004609 AA 8 0 8 AG 12 7 19 GG 4 16 20 0.020 0.741 0.858 004613 AA 4 16 20 AT 12 7 19 TT 8 0 8 0.020 0.741 0.858 004614 GG 8 0 8 GT 12 7 19 TT 4 16 20 0.020 0.741 0.858 004615 AA 8 0 8 AT 12 7 19 TT 4 16 20 0.020 0.741 0.858 004649 -- 0 0 0 +- 1 0 1 ++ 23 23 46 0.011 0.000 0.005 005116 CC 0 0 0 CT 5 0 5 TT 17 23 40 0.362 0.000 0.156 005131 CC 22 20 42 CT 0 3 3 TT 0 0 0 0.000 0.112 0.054 005234 AA 0 0 0 AG 1 0 1 GG 22 23 45 0.011 0.000 0.006 005353 CC 22 23 45 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 005520 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 005911 AA 16 2 18 AC 7 11 18 CC 1 10 11 0.044 0.179 2.206 006143 AA 23 22 45 AC 1 0 1 CC 0 0 0 0.011 0.000 0.006 006411 CC 0 1 1 CT 8 7 15 TT 16 15 31 0.960 0.025 0.280 006505 AA 0 0 0 AG 1 0 1 GG 23 22 45 0.011 0.000 0.006 006582 CC 0 0 0 CT 1 0 1 TT 23 23 46 0.011 0.000 0.005 006756 AA 1 9 10 AG 7 11 18 GG 16 2 18 0.044 0.279 1.713 007317 AA 21 21 42 AG 1 0 1 GG 0 0 0 0.012 0.000 0.006 007536 CC 1 0 1 CT 11 8 19 TT 11 15 26 0.741 1.019 1.367 007543 AA 2 2 4 AC 12 12 24 CC 9 9 18 0.517 0.517 1.035 007625 AA 0 0 0 AC 1 0 1 CC 22 23 45 0.011 0.000 0.006 007744 AA 1 2 3 AC 12 12 24 CC 9 9 18 1.455 0.517 1.800 007782 AA 1 2 3 AG 12 12 24 GG 11 9 20 1.059 0.517 1.439 007936 GG 22 23 45 GT 1 0 1 TT 0 0 0 0.011 0.000 0.006 008035 CC 11 9 20 CG 12 12 24 GG 1 2 3 1.059 0.517 1.439 008098 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 008210 CC 24 22 46 CT 0 1 1 TT 0 0 0 0.000 0.011 0.005 008464 CC 1 2 3 CT 12 13 25 TT 11 8 19 1.059 1.043 1.942 008470 CC 1 2 3 CG 12 13 25 GG 11 8 19 1.059 1.043 1.942 008485 AA 5 0 5 AG 5 0 5 GG 14 23 37 6.369 0.000 17.111 008500 CC 11 8 19 CT 12 13 25 TT 1 2 3 1.059 1.043 1.942 008692 AA 0 1 1 AC 2 7 9 CC 21 15 36 0.048 0.025 0.230 008833 AA 22 19 41 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 009205 CC 15 2 17 CT 5 11 16 TT 0 8 8 0.408 0.416 1.328 009292 AA 0 0 0 AG 3 0 3 GG 21 23 44 0.107 0.000 0.051 009580 AA 0 0 0 AC 5 0 5 CC 19 23 42 0.324 0.000 0.148 009642 CC 24 22 46 CT 0 1 1 TT 0 0 0 0.000 0.011 0.005 009993 AA 0 0 0 AT 2 0 2 TT 22 23 45 0.045 0.000 0.022 010228 AA 3 8 11 AG 5 12 17 GG 16 3 19 4.041 0.209 3.056 010633 CC 0 0 0 CT 1 0 1 TT 23 23 46 0.011 0.000 0.005 010694 AA 0 0 0 AG 2 0 2 GG 22 22 44 0.045 0.000 0.023 010836 AA 0 2 2 AG 11 6 17 GG 12 15 27 2.272 1.252 0.110 010942 CC 6 4 10 CT 7 10 17 TT 7 7 14 1.779 0.016 1.086 010985 CC 6 4 10 CT 7 10 17 TT 7 7 14 1.779 0.016 1.086 011184 AA 6 4 10 AC 7 10 17 CC 7 7 14 1.779 0.016 1.086 011204 CC 17 21 38 CT 3 0 3 TT 0 0 0 0.131 0.000 0.059 011230 CC 3 7 10 CG 8 11 19 GG 9 3 12 0.292 0.159 0.206 011387 -- 11 13 24 +- 7 8 15 ++ 2 0 2 0.299 1.163 0.031 012773 CC 4 7 11 CG 8 9 17 GG 9 2 11 0.777 0.126 0.641 012817 GG 0 1 1 GT 10 4 14 TT 10 13 23 2.222 0.720 0.446 012865 CC 8 2 10 CT 7 9 16 TT 6 7 13 2.249 0.126 1.189 012868 AA 18 18 36 AG 3 0 3 GG 0 0 0 0.124 0.000 0.062 013075 CC 4 2 6 CT 12 6 18 TT 7 15 22 0.087 1.252 0.553 013295 AA 11 15 26 AT 12 6 18 TT 0 2 2 2.865 1.252 0.261 013731 AA 0 0 0 AG 1 0 1 GG 23 22 45 0.011 0.000 0.006 013757 CC 9 15 24 CG 11 7 18 GG 4 1 5 0.042 0.025 0.335 013921 CC 16 15 31 CT 5 5 10 TT 0 0 0 0.383 0.408 0.791 013992 CC 21 19 40 CT 0 1 1 TT 0 0 0 0.000 0.013 0.006 014004 CC 17 20 37 CT 3 0 3 TT 1 0 1 2.136 0.000 5.344 014059 GG 3 6 9 GT 10 10 20 TT 8 4 12 0.002 0.002 0.015 014066 AA 0 0 0 AC 4 6 10 CC 17 14 31 0.233 0.623 0.791 014098 GG 0 0 0 GT 5 6 11 TT 16 14 30 0.383 0.623 0.984 014147 -- 11 14 25 +- 9 6 15 ++ 1 0 1 0.247 0.623 0.525 014309 -- 12 15 27 +- 9 6 15 ++ 3 2 5 0.389 1.252 1.567 014317 CC 0 0 0 CT 1 0 1 TT 21 21 42 0.012 0.000 0.006 014385 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 014508 CC 3 2 5 CT 6 5 11 TT 12 15 27 1.890 2.001 4.052 014550 GG 0 1 1 GT 4 7 11 TT 17 14 31 0.233 0.011 0.000 014627 -- 17 14 31 +- 7 8 15 ++ 0 1 1 0.700 0.011 0.280 015140 AA 1 0 1 AG 4 0 4 GG 19 23 42 1.361 0.000 3.895 015423 AA 0 1 1 AG 7 8 15 GG 17 14 31 0.700 0.011 0.280 015470 AA 22 21 43 AT 1 2 3 TT 0 0 0 0.011 0.048 0.052 015653 CC 12 14 26 CT 10 8 18 TT 1 1 2 0.374 0.011 0.261 015894 CC 4 2 6 CT 10 6 16 TT 10 15 25 0.296 1.252 1.629 016106 CC 11 14 25 CT 11 8 19 TT 1 1 2 0.741 0.011 0.473 016217 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 016597 CC 1 0 1 CT 4 0 4 TT 18 23 41 1.252 0.000 3.784 016628 CC 10 15 25 CT 9 6 15 TT 4 2 6 0.591 1.252 2.100 016727 CC 18 21 39 CT 4 2 6 TT 1 0 1 1.252 0.048 1.467 016800 CC 0 0 0 CT 2 0 2 TT 22 23 45 0.045 0.000 0.022 016828 -- 2 0 2 +- 3 0 3 ++ 19 23 42 5.958 0.000 13.551 017101 AA 0 0 0 AT 0 1 1 TT 24 19 43 0.000 0.013 0.006 017416 CC 23 18 41 CT 1 2 3 TT 0 0 0 0.011 0.055 0.055 017471 AA 0 0 0 AG 1 0 1 GG 23 20 43 0.011 0.000 0.006 017565 AA 17 22 39 AT 6 0 6 TT 1 0 1 0.240 0.000 1.467 017598 AA 1 0 1 AG 3 0 3 GG 20 22 42 2.617 0.000 6.146 018286 AA 0 0 0 AG 1 0 1 GG 23 22 45 0.011 0.000 0.006 018591 CC 21 22 43 CT 1 0 1 TT 0 0 0 0.012 0.000 0.006 018806 CC 0 0 0 CG 1 0 1 GG 22 22 44 0.011 0.000 0.006 018833 AA 22 22 44 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 018873 AA 19 4 23 AG 3 11 14 GG 1 7 8 2.457 0.008 4.050 018899 CC 20 22 42 CT 2 0 2 TT 1 0 1 4.707 0.000 10.228 019052 CC 18 22 40 CT 4 0 4 TT 1 0 1 1.252 0.000 3.673 019361 AA 0 0 0 AG 1 0 1 GG 18 20 38 0.014 0.000 0.007 019407 AA 13 12 25 AG 6 7 13 GG 0 1 1 0.668 0.000 0.208 019517 CC 13 20 33 CT 5 0 5 TT 1 0 1 0.294 0.000 1.808 019847 AA 1 6 7 AC 4 12 16 CC 19 4 23 1.361 0.220 2.002 019966 CC 21 21 42 CT 1 0 1 TT 0 0 0 0.012 0.000 0.006 020393 AA 0 0 0 AG 1 2 3 GG 23 21 44 0.011 0.048 0.051 020564 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 020988 AA 18 14 32 AG 5 7 12 GG 0 1 1 0.342 0.011 0.010 021083 AA 10 15 25 AG 9 5 14 GG 4 2 6 0.591 2.001 2.653 021537 CC 20 20 40 CT 2 0 2 TT 0 0 0 0.050 0.000 0.025 Note: AD: African_Descent ED: European_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 002992: C 004649: A 011387: AAC 014147: T 014309: AACAAAA 014627: A 016828: T