LOCUS FUT1 8549 bp DNA linear PRI 07-FEB-2005 DEFINITION Homo sapiens. ACCESSION FUT1 VERSION TMP KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 8549) AUTHORS Rieder,M.J., Johanson,E.J., da Ponte,S.H., Hastings,N.C., Ahearn,M.O., Bertucci,C.B., Wong,M.W., Yi,Q. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (07-FEB-2005) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA COMMENT To cite this work please use: SeattleSNPs. NHLBI HL66682 Program for Genomic Applications, UW-FHCRC, Seattle, WA (URL: http://pga.gs.washington.edu). FEATURES Location/Qualifiers source 1..8549 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" repeat_region 1..387 /rpt_family="ERVK" /rpt_type=dispersed repeat_region 388..687 /rpt_family="Alu" /rpt_type=dispersed variation 605 /frequency="0.04" /replace="T" repeat_region 688..1070 /rpt_family="ERVK" /rpt_type=dispersed variation 706 /frequency="0.07" /replace="C" variation 1260 /frequency="0.07" /replace="A" variation 1384 /frequency="0.09" /replace="G" variation 1386 /frequency="0.01" /replace="C" variation 1395 /frequency="0.02" /replace="A" variation 1459 /frequency="0.42" /replace="G" variation 1617 /frequency="0.04" /replace="C" gene 2000..6583 /gene="FUT1" mRNA join(2000..2100,3307..6583) /gene="FUT1" /product="FUT1" variation 2021 /gene="FUT1" /frequency="0.01" /replace="A" variation 2125 /gene="FUT1" /frequency="0.01" /replace="C" variation 2319 /gene="FUT1" /frequency="0.04" /replace="T" misc_feature 2404..2632 /gene="FUT1" /note="Region not scanned for variation" repeat_region 2452..2619 /rpt_family="Alu" /rpt_type=dispersed repeat_region 2620..2920 /rpt_family="Alu" /rpt_type=dispersed variation 2892 /gene="FUT1" /frequency="0.38" /replace="A" repeat_region 2921..3059 /rpt_family="Alu" /rpt_type=dispersed misc_feature 3026..3262 /gene="FUT1" /note="Region not scanned for variation" variation 3274 /gene="FUT1" /frequency="0.36" /replace="A" CDS 3309..4406 /gene="FUT1" /codon_start=1 /product="fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase)" /translation="MWLRSHRQLCLAFLLVCVLSVIFFLHIHQDSFPHGLGLSILCPD RRLVTPPVAIFCLPGTAMGPNASSSCPQHPASLSGTWTVYPNGRFGNQMGQYATLLAL AQLNGRRAFILPAMHAALAPVFRITLPVLAPEVDSRTPWRELQLHDWMSEEYADLRDP FLKLSGFPCSWTFFHHLREQIRREFTLHDHLREEAQSVLGQLRLGRTGDRPRTFVGVH VRRGDYLQVMPQRWKGVVGDSAYLRQAMDWFRARHEAPVFVVTSNGMEWCKENIDTSQ GDVTFAGDGQEATPWKDFALLTQCNHTIMTIGTFGFWAAYLAGGDTVYLANFTLPDSE FLKIFKPEAAFLPEWVGINADLSPLWTLAKP" variation 3343 /gene="FUT1" /frequency="0.01" /replace="T" variation 4458 /gene="FUT1" /frequency="0.30" /replace="A" variation 4586 /gene="FUT1" /frequency="0.32" /replace="C" variation 4796 /gene="FUT1" /frequency="0.11" /replace="A" variation 4858 /gene="FUT1" /frequency="0.05" /replace="A" repeat_region 4949..5256 /rpt_family="Alu" /rpt_type=dispersed variation 5149 /gene="FUT1" /frequency="0.32" /replace="A" variation 5168 /gene="FUT1" /frequency="0.25" /replace="G" repeat_region 5261..5583 /rpt_family="Alu" /rpt_type=dispersed variation 5263 /gene="FUT1" /frequency="0.01" /replace="A" variation 5271 /gene="FUT1" /frequency="0.07" /replace="A" variation 5272 /gene="FUT1" /frequency="0.47" /replace="A" variation 5273 /gene="FUT1" /frequency="0.47" /replace="" variation 5298..5301 /gene="FUT1" /frequency="0.68" /replace="" repeat_region 5584..5724 /rpt_family="Alu" /rpt_type=dispersed variation 5614 /gene="FUT1" /frequency="0.05" /replace="A" variation 5700 /gene="FUT1" /frequency="0.32" /replace="C" variation 6096 /gene="FUT1" /frequency="0.27" /replace="T" repeat_region 6706..7013 /rpt_family="Alu" /rpt_type=dispersed variation 7179 /frequency="0.02" /replace="A" variation 7194 /frequency="0.37" /replace="C" variation 7218 /frequency="0.29" /replace="T" variation 7251..7257 /frequency="0.11" /replace="" variation 7313 /frequency="0.38" /replace="C" variation 7612 /frequency="0.48" /replace="G" variation 7654 /frequency="0.38" /replace="G" variation 7963 /frequency="0.35" /replace="T" variation 8037 /frequency="0.35" /replace="T" variation 8056 /frequency="0.35" /replace="A" variation 8153 /frequency="0.27" /replace="A" variation 8188 /frequency="0.01" /replace="C" variation 8303 /frequency="0.05" /replace="A" BASE COUNT 1678 a 2361 c 2366 g 2144 t ORIGIN 1 ataaccagga aacaaccggt gggtataggg tcaggtactg aagggacatt gtgagaagtg 61 acctagaagg caagaggtga gccttctgtc acaccggcat aagggcctct tgagggctcc 121 ttggtcaagc gggaacgcca gtgtctggga aggcacccgt tactcagcag accacgaaag 181 ggaatctcct tttcttggag gagtcaggga acactctgct ccaccagctt cttgtgggag 241 gctgggtatt atctaggcct gcccgcagtc atcctgctgt gctgtgcttc aatggtcacg 301 ctccttgtcc tcttgcattt tcctcccgta ctcctggttc ctctttgaag ttcgtagtag 361 atagcggtag aagaaatagt gaaagccttt tttttttttt ttttgaggcg gagtctcgct 421 ctgtccccca ggctggagtg cagtggcgtg atctcggctc actgcaatct ccgcctcctg 481 ggttcacacc attctcctgc ctcaccctcc caaatagcta ggactacagg cgccctccac 541 cacgcgcccg gataattttt tgtattttta gtagagacag ggtttcaccg tgttagccag 601 gatggcctcc acctcctgac cttgtgatcc gcccgcctca gcctcccaaa gtgctgggat 661 tacaggcgtg agccaccgcg cccgcccgaa atagtgaaag tcttaaagtc tttgatcttt 721 cttataagtg cagagaagaa aacgctgaca tatgctgcct tctctttctg cttcggctgc 781 ctaaaaggga agggccccct gtcccatgat cacgtgactt gcttgacctt atcagtcatt 841 tggacgactc accctcctta tcctgccccc ccttgtcttg tatacaataa atatcagcgc 901 gcccagccat tcggggccac taccggtctc tgcgtcttga tggtagtggt cccccgggcc 961 cagctgtttt ctctttatct ctttgtcttg tgtctttatt tcttacaatc tctcctctcc 1021 tcacagggga agaacaccca cccgcaaagc cccgtagggc tggaccctac gttagcctgc 1081 cctgctcggg gttggcgatg ctggaggtgg gccttggacc agagaaaatg ctttaattag 1141 gtgacaagcg ggcagaggcc tttgtctctg gcgccggcag ccacggcccc cgctgacggc 1201 gtgggaaaca gaccctgttc cactccggtc tccagccttg gaatggttgc cttcgtgcag 1261 tgcaggtctg gaaagtagca gtttggcacg ggaccctaga attccccaaa aggagtgact 1321 aggggctggg attctggaat ttgagtgtgg acggtgaggc ggggggtgtg ggagatcgga 1381 gaccctggtg ggcgcgggag cacctgcagg ctggaggccc tcgcgcgctc cggcggcagc 1441 ctggcaaaca ggttctccat cccccaggag gacgcggcag agggcggacg atcgctccac 1501 tcgccgggac caggtgcggg ggccctgccc agccgctggg gcgtggccag gctcgaagca 1561 cccaggtgtc gggggccgac tctaagccct ggcaccggaa gagagagggc ggcggattgg 1621 acctcccggc tccagcattg caactgggcg ctccgtctcc tggtccacgc aatgatgctg 1681 cggctgctca gaagccaggt agcctgccct gggtgaagcc ttcgcgcagg tcaatgacgg 1741 ggcggagggg cagggcgcgg tcccctgcat ccccgatctg gggagcggtg ggcccagggg 1801 ccatcgcctt agcccctggc gctggggctc ggcgccaagt gacgggcggg gctccacctt 1861 ccagccatcc gcccggcccg ggagggcgga cgctgcgaga ctcccggccg cgccctctcc 1921 ttcctctcct ccccaagccc tcgctgccag tccggacagg ctgcgcggag gggagggctg 1981 ccgggccgga tagccggacg cctggcgttc caggggcggc cggatgtggc ctgcctttgc 2041 ggagggtgcg ctccggccac gaaaagcgga ctgtggatct gccacctgca agcagctcgg 2101 gtaagtgggg actgccccac tcagttgttc ctgggaccca ggaacaactc cttcagaacc 2161 aggaggtgca cccccaacct cttctccagg tcttcctaag gccctaggaa tctccgccac 2221 ctccccagcc attactcctc caggaaccaa gatgctcctt ccgctcctga ccctccagcc 2281 tctcttgttt tacttgaact atcgtttccc atcaccacct ctgtggtgga ttttgcgcct 2341 cacagacagg tactcctgag aaacaggctg gtggaagagt ccagtatcag cggaacttac 2401 aggaggggag actcgagatt ccttcaggaa aggtgtagga acctggacca ctttcttttt 2461 tttttttttt tttttttttt aagacagggt ccctctctgt cgcgcaagct ggagtgcagt 2521 cagcggtgct atcgcggctc attgtgagct ccggggatcc tcccgcctta gcatccggtg 2581 tagctgagac cacagacatg tgccaccatg ccaagctaat tttatttatt tttttttgga 2641 gacggagttt cactcttgtt gcccaggctg gagtgtaatg gcatgatctc agctcaccgc 2701 aactcccgcc ccccgggttc aggcgattct cctgcctcag cctcccgagt ggctgggatt 2761 acaggcatgc gccaccatgc ccggctaatt ttgtatttta agtagagaca gggtttctcc 2821 acgttggtca ggctggtctc gaactcccaa cctcaggtga tccacccacc ttggcctccc 2881 aaagtgctgg ggttacaggt gtgagccacc gcgcctggcc catgccaagc taattttaaa 2941 atttttttgt aagagtgctc tgttgcccag gctgatcttg aactcctggg ctcaagggat 3001 cctcccatct cagcctccca atatgctggg attacaggtg tgagccacag tgcccagcca 3061 aaccatggct atcttgaaaa ccacttgtct tccagtcccc atgccccgaa attccaaggc 3121 tctcatccct gaaacctagg actcaggctc tccctacctc agccccagga gtctaaacct 3181 ttaacttcct ctttccctgg gactaaggag tgctgcaccc caggcgcctc ccttacccca 3241 catccctcct cagcctcccc tcctcagcct cagtgcattt gctaattcgc ctttcctccc 3301 ctgcagccat gtggctccgg agccatcgtc agctctgcct ggccttcctg ctagtctgtg 3361 tcctctctgt aatcttcttc ctccatatcc atcaagacag ctttccacat ggcctaggcc 3421 tgtcgatcct gtgtccagac cgccgcctgg tgacaccccc agtggccatc ttctgcctgc 3481 cgggtactgc gatgggcccc aacgcctcct cttcctgtcc ccagcaccct gcttccctct 3541 ccggcacctg gactgtctac cccaatggcc ggtttggtaa tcagatggga cagtatgcca 3601 cgctgctggc tctggcccag ctcaacggcc gccgggcctt tatcctgcct gccatgcatg 3661 ccgccctggc cccggtattc cgcatcaccc tgcccgtgct ggccccagaa gtggacagcc 3721 gcacgccgtg gcgggagctg cagcttcacg actggatgtc ggaggagtac gcggacttga 3781 gagatccttt cctgaagctc tctggcttcc cctgctcttg gactttcttc caccatctcc 3841 gggaacagat ccgcagagag ttcaccctgc acgaccacct tcgggaagag gcgcagagtg 3901 tgctgggtca gctccgcctg ggccgcacag gggaccgccc gcgcaccttt gtcggcgtcc 3961 acgtgcgccg tggggactat ctgcaggtta tgcctcagcg ctggaagggt gtggtgggcg 4021 acagcgccta cctccggcag gccatggact ggttccgggc acggcacgaa gcccccgttt 4081 tcgtggtcac cagcaacggc atggagtggt gtaaagaaaa catcgacacc tcccagggcg 4141 atgtgacgtt tgctggcgat ggacaggagg ctacaccgtg gaaagacttt gccctgctca 4201 cacagtgcaa ccacaccatt atgaccattg gcaccttcgg cttctgggct gcctacctgg 4261 ctggcggaga cactgtctac ctggccaact tcaccctgcc agactctgag ttcctgaaga 4321 tctttaagcc ggaggcggcc ttcctgcccg agtgggtggg cattaatgca gacttgtctc 4381 cactctggac attggctaag ccttgagagc cagggagact ttctgaagta gcctgatctt 4441 tctagagcca gcagtacgtg gcttcagagg cctggcatct tctggagaag cttgtggtgt 4501 tcctgaagca aatgggtgcc cgtatccaga gtgattctag ttgggagagt tggagagaag 4561 ggggacgttt ctggaactgt ctgaatattc tagaactagc aaaacatctt ttcctgatgg 4621 ctggcaggca gttctagaag ccacagtgcc cacctgctct tcccagccca tatctacagt 4681 acttccagat ggctgccccc aggaatgggg aactctccct ctggtctact ctagaagagg 4741 ggttacttct cccctgggtc ctccaaagac tgaaggagca tatgattgct ccagagcaag 4801 cattcaccaa gtccccttct gtgtttctgg agtgattcta gagggagact tgttctagag 4861 aggaccaggt ttgatgcctg tgaagaaccc tgcagggccc ttatggacag gatggggttc 4921 tggaaatcca gataactaag gtgaagaatc tttttagttt tttttttttt tttttggaga 4981 cagggtctcg ctctgttgcc caggctggag tgcagtggcg tgatcttggc tcactgcaac 5041 ttccgcctcc tgtgttcaag cgattctcct gtctcagcct cctgagtaga tgggactaca 5101 ggcacaggcc attatgcctg gctaattttt gtatttttag tagagacagg gtttcaccat 5161 gttggccagg atggtctcga tctcctgacc ttgtcatcca cctgtcttgg cctcccaaag 5221 tgctgggatt actggcatga gccactgtgc ccagcccgga tatttttttt ttaattattt 5281 atttatttat ttatttattt tttgagacgg agtcttgctc tgtagcccag gccagagtgc 5341 agtggcgcga tctcagctca ctgcaagctc tgcctcccgg gttcatgcca ttctgcctca 5401 gcctcctgag tagctgggac tacaggcgcc cgccaccacg cccggctaat tttttttgta 5461 tttttagtag agacggggtt tcatcgtgtt aaccaggatg gtctcgatct cctgacctcg 5521 tgatctgccc acctcggcct cccacagtgc tgggattacc ggcgtgagcc accatgcctg 5581 gcccggataa ttttttttaa tttttgtaga gacgaggtct tgtgatattg cccaggctgt 5641 tcttcaactc ctgggctcaa gcagtcctcc caccttggcc tcccagaatg ctgggtttat 5701 agatgtgagc cagcacaccg ggccaagtga agaatctaat gaatgtgcaa cctaattgta 5761 gcatctaatg aatgttccac cattgctgga aaaattgaga tggaaaacaa accatctcta 5821 gttggccagc gtcttgctct gttcacagtc tctggaaaag ctggggtagt tggtgagcag 5881 agcgggactc tgtccaacaa gccccacagc ccctcaaaga cttttttttg tttgttttga 5941 gcagacaggc taaaatgtga acgtggggtg agggatcact gccaaaatgg tacagcttct 6001 ggagcagaac tttccaggga tccagggaca ctttttttta aagctcataa actgccaaga 6061 gctccatata ttgggtgtga gttcaggttg cctctcacaa tgaaggaagt tggtctttgt 6121 ctgcaggtgg gctgctgagg gtctgggatc tgttttctgg aagtgtgcag gtataaacac 6181 accctctgtg cttgtgacaa actggcaggt accgtgctca ttgctaacca ctgtctgtcc 6241 ctgaactccc agaaccacta catctggctt tgggcaggtc tgagataaaa cgatctaaag 6301 gtaggcagac cctggaccca gcctcagatc caggcaggag cacgaggtct ggccaaggtg 6361 gacggggttg tcgagatctc aggagcccct tgctgttttt tggagggtga aagaagaaac 6421 cttaaacata gtcagctctg atcacatccc ctgtctactc atccagaccc catgcctgta 6481 ggcttatcag ggagttacag ttacaattgt tacagtactg ttcccaactc agctgccacg 6541 ggtgagagag caggaggtat gaattaaaag tctacagcac taacccgtgt ctctgtagct 6601 tttttggagc cagagccact gtgtatgtgt gtgtgggttt gtgtgtgtgt gtgtgtgtgt 6661 gtgtgtgtaa gagagtggag gaaaaggtgg ggtacttctg aagactttta ttttttttta 6721 attaatttat tttttttcag agatcgagtc ttgctctgtg gcccaggctg gagtgcagta 6781 gtgtgatctc ggcccactgc aaactcccac ctctcggatt ctggtgcctc agcctcccaa 6841 gtagctggga ctacagacgt tcgccaccat gcccagctaa tttttgtatt tttagtagag 6901 acggggtttc accatgttag ccaggctggc ctcgaactcc tgacctcaga caatctgccc 6961 gcctcggcct cccaaagcgc tggaattaca agcgtgagcc accgcgccgg gccctgagga 7021 tttttattac tcgtgattgg gagtactgtc cctacttaga tctgacagcc ccttgttgct 7081 ggacttgtgt gagttgtggt ccctgttttt ctggttccct gtttctatca cacaggagag 7141 agagaccttc caggacccta acgtctgagc ccccagttgc tcactcctgg actgtcagta 7201 ttggccccca gtcctctcct cccactggga cctccgcgtg ggcagaagag gcggaggagg 7261 gagcggatta tcactgaact acatttcccg gaaagctatg aggttggcag cgtcagtcag 7321 ctacagagaa agaggcccca gggcattttg ggagttgtag tcttagggct aaaatgtcca 7381 cttcgtggct cgacagccgt ttccaaggac cgcggtgggg gcggcagcgg cctggggggc 7441 cggatctagc ccaaagcctg ggtcctgggg caaggggagg ggaggaaact gaaggcctga 7501 gtccggtcct tgactctgga agccagagta gtcaggaggc ttcctcttcc ctagatgctg 7561 ggaaaattct agtccaaaaa ggctgcagcc tctgtgacgt catggagcga taggcgggac 7621 ctccctttgt tgcagtccaa tcagacagag ttgagtttct gggtggggcc gaggaaaacc 7681 ccaaggaata tctataaagg aattcgggcc cctacgtgag aagctcggag ggggtggttt 7741 caggagttcc ttgtggagag gggatcgtcc gtgactcaga ccccgtcgaa aagctctcga 7801 tttcacgcaa ccaaccttac cctcgtcccc aacacaatcc ttgattttac ccctgggaaa 7861 attagcgtag gtggtcatga ccccggcttc ctctttaaaa gccctcagaa cctggaccgg 7921 gctcctcaat gaaccctagt gttagaggcc acaaatcggg aaccaaggtc ggggagcggc 7981 tgtttagggt gcatcactgt tcaggatgca tcggggctcc tttttctaag cggaagggtg 8041 cgccctgcaa attgggagcc cgttagtttt ggggaagggt gaacaagggc cccctaggtc 8101 tagaggaccg catggagtct cgcttaagtg ttagtggggt cctcagttct aggaatctgg 8161 tatgtgtttt ggttttgaag gagttccgag tttgataata tcgtggttgg gtctgtgtta 8221 gatgtttatt ggtttgggca ttgaatcttc agcttgaggt tcaacaggtt ttggggggct 8281 ggcgggggag tgcctcggtg ttgctcttaa gggttggagt tcaggctcac gtcaatctgg 8341 ggacttggaa aattccacag tttgggattt tgggaagggg cgcatggggt tgggagattc 8401 caggttctga gtttggggac ttatgagtga ttcctgttta atagtttttc tgatctctca 8461 gttgggggat tcagtgagaa ccctaaattt tgggtcccct ggattggggc tcagtttcac 8521 acttcggagg catttgatga aggacatag //