LOCUS FLJ23878 8077 bp DNA linear PRI 21-MAR-2005 DEFINITION Homo sapiens FLJ23878: Homo sapiens hyopthetical protein FLJ23878 (FLJ23878) gene, complete cds. ACCESSION FLJ23878 VERSION tmp KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 8077) AUTHORS Livingston,R.J., Rieder,M.J., Rajkumar,N., Downing,T.K., Olson,A.N., Nguyen,C.P., Gildersleeve,H., Cassidy,C.M., Johnson,E.J., Swanson,J.E., McFarland,I., Yool,B., Park,C. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (21-MAR-2005) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA COMMENT To cite this work please use: NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478, Department of Genome Sciences, Seattle, WA (URL: http://egp.gs.washington.edu). FEATURES Location/Qualifiers source 1..8077 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" variation 133..134 /frequency="0.03" /replace="" variation 189 /frequency="0.08" /replace="A" variation 736 /frequency="0.09" /replace="G" variation 948 /frequency="0.02" /replace="T" variation 953 /frequency="0.09" /replace="A" gene 968..7090 /gene="FLJ23878" mRNA join(968..1062,1909..2461,4531..5052,5310..5453, 6459..7090) /gene="FLJ23878" /product="FLJ23878" variation 1000 /gene="FLJ23878" /frequency="0.02" /replace="C" variation 1020 /gene="FLJ23878" /frequency="0.10" /replace="A" variation 1192 /gene="FLJ23878" /frequency="0.02" /replace="G" variation 1222 /gene="FLJ23878" /frequency="0.01" /replace="A" variation 1757..1758 /gene="FLJ23878" /frequency="0.68" /replace="" variation 1951 /gene="FLJ23878" /frequency="0.17" /replace="T" CDS join(2027..2461,4531..5052,5310..5453,6459..6581) /gene="FLJ23878" /codon_start=1 /product="FLJ23878: Homo sapiens hyopthetical protein FLJ23878" /translation="MTPMKRSVQTQVSEPFMESWGEESLPELPAEQSLTEYSDLEEAP SAHTLYVGHLNPQFSVPVLACLLRDTLERLEMPVAREHIEVVRRPRKAYALVQVTVHR DTLASLPWRLQTALEEHLILKELAARGKDLLLSEAQGPFSHREEKEEEEEDSGLSPGP SPGSGVPLPTWPTHTLPDRPQAQQLQSCQGRPSGVCSDSAIVHQQIVGKDQLFQGAFL GSETRNMEFKRGSGEYLSLAFKHHVRRYVCAFLNSEGGSLLVGVEDSGLVQGIRCSHR DEDRARLLVDSILQGFKPQIFPDAYTLTFIPVISTSETSVPLKVIRLTVHTPKAQSQP QLYQTDQGEVFLRRDGSIQGPLSASAIQEWCRQRWLVELGKLEEKMKALMMEKEQLQQ QLQQHGPVSCTCCVL" variation 2114 /gene="FLJ23878" /frequency="0.08" /replace="A" variation 2457 /gene="FLJ23878" /frequency="0.17" /replace="C" variation 2618 /gene="FLJ23878" /frequency="0.01" /replace="T" variation 2770 /gene="FLJ23878" /frequency="0.09" /replace="A" variation 2913 /gene="FLJ23878" /frequency="0.12" /replace="G" repeat_region 2979..3279 /rpt_family="L2" /rpt_type=dispersed repeat_region 3560..3858 /rpt_family="Alu" /rpt_type=dispersed variation 3570 /gene="FLJ23878" /frequency="0.01" /replace="A" variation 3671 /gene="FLJ23878" /frequency="0.07" /replace="C" variation 3703 /gene="FLJ23878" /frequency="0.33" /replace="G" variation 3722 /gene="FLJ23878" /frequency="0.01" /replace="T" variation 3959 /gene="FLJ23878" /frequency="0.01" /replace="T" variation 4020 /gene="FLJ23878" /frequency="0.01" /replace="A" variation 4042 /gene="FLJ23878" /frequency="0.18" /replace="G" variation 4408 /gene="FLJ23878" /frequency="0.19" /replace="G" variation 4596 /gene="FLJ23878" /frequency="0.01" /replace="A" variation 4989 /gene="FLJ23878" /frequency="0.02" /replace="T" variation 5383 /gene="FLJ23878" /frequency="0.05" /replace="C" variation 5399 /gene="FLJ23878" /frequency="0.01" /replace="A" variation 5458 /gene="FLJ23878" /frequency="0.01" /replace="A" misc_feature 5585..6396 /gene="FLJ23878" /note="Region not scanned for variation" repeat_region 5680..5972 /rpt_family="Alu" /rpt_type=dispersed variation 6493..6495 /gene="FLJ23878" /frequency="0.02" /replace="" variation 6763 /gene="FLJ23878" /frequency="0.10" /replace="C" variation 6815 /gene="FLJ23878" /frequency="0.01" /replace="C" variation 7072 /gene="FLJ23878" /frequency="0.02" /replace="G" variation 7127 /frequency="0.01" /replace="A" repeat_region 7170..7316 /rpt_family="MIR" /rpt_type=dispersed repeat_region 7466..7740 /rpt_family="L2" /rpt_type=dispersed variation 7560 /frequency="0.34" /replace="T" variation 7564 /frequency="0.45" /replace="G" variation 7743 /frequency="0.02" /replace="G" variation 7886 /frequency="0.01" /replace="A" repeat_region 7947..7984 /rpt_family="L2" /rpt_type=dispersed BASE COUNT 1813 a 2310 c 2340 g 1614 t ORIGIN 1 ttctctaacc ctaagagctg tggacacaaa gccgagccca acctggctgc tgcccgggcg 61 ggcaaggaga gggcaccgaa tgcactctcc ccagagcctc gcactgccac cagttgaggc 121 ctgcgcccct ctcttccccg cacaccatag cctcttttct tgagtgctct acccaaacta 181 ctgcctcacc ccctaggaaa caaacatttg gtaacatctt cagaaaggct gctttcaagg 241 aaggcagctt ctctacgctg tcaaacagct ttcttagttg aagcatctaa ctgtggcacc 301 atccttactg cccccaattg gggcttccag aagcagtgtg ggcaagcgct gccagccttc 361 tgcagaatga tgagcactgg tcagtcctgt gctgataaag actgtgtgtc acccacgtct 421 tggtttctcc aacagcaggt aacaacctca tcttcccaaa gagatagata gctacgcctg 481 acctattttt cagggctctt ctggacagca gcctctgtct ccagcacaga gaagggcctg 541 gcgtcagggg gagccctgga gcctaccatg tgcctcctgc tccatcttgg gagcagctgg 601 gccctgtcag tactcagtag agcctgggat tggtgactga ctaaagaggg aggtggaggc 661 tttaggcagc agcgctgaaa gaggtggcaa gaggtgacct gcatgggaac tggggcctga 721 agagacatca ctaagtgggg aagtgtgtcc cacagccaag ctgcatggtg ggtgggccgc 781 tgggtctgct tccagtgtgt ggtgggaccc acagggagct gagttttcct gtttgatttc 841 ccgcacccag cctgcctgtg gctggccaag aaggcattgt tgaacctcat gagatcacag 901 aggtagctgt gcaggccccg cccacttcct ataaccctgg ttctggccgt ccctgtgcca 961 agcctccaag ttccctgaga gctaccggcc aggggtcggg aggctatggg agctcagggc 1021 aggcacctcc catgctcccg cgggagccac caggacatga aggtcatagg cctctcctct 1081 cctcctcttc ctgtttgacc tgaatgcccc caggccaact gcctcaagga ttccatttga 1141 gaagatgcag gctgggtgtg tggggagcag tagaggggct ggtgtgtgca catatgtgca 1201 cagctcagga cagaggctcc ctggacttgg ggcgggggca ctagggcccc aactctaacc 1261 ctcgttctgc cctgttgacc tctgctctct ggaccaaaaa tggaggactc agtctagact 1321 agttcttagg gtctaggagc caccttaagt tatgtttata tgcaaaggcc atttttctga 1381 gaggccatag ctttcatcag tgtgccaaaa agcgtgagat cctctgctct aaaagcctct 1441 gccccagcgc tgcctagttt cagagccccc gatggcctca catggggttt tagagcaggc 1501 agagaagctg caatggggcc accagccagt cctcagagtc ctgggttaag gcctcctctc 1561 caggaggccc tgtgtaaagg ttttctctgt tgcctggagg caggagtgaa ctggtaggca 1621 ggaaaccctg agggtaccta ggaggcccct agcctgtggg ttggggaggg aagacaggac 1681 ccctggggcc actgaaatgg tggagctctc agagacctga gttctggtcc cttctgccac 1741 tttttgggca gatcccctgt cttcccacag gccctgtgtc ttgctcagtc cacgtgactc 1801 tgctttctca tcctaggcct caggtgggtg gcaggccctt tcctgcttgc cctctgccct 1861 ccctctctct ggccctgccc agtctctgcc aatctgtgta cctcccagga gccgggacac 1921 tccctgagtc ctctgggagc ccttaagcca cactgagaac acagaccctg ggagaagcag 1981 ccagcagtga ggaatcctgg aaccccttcc cagggagagc cttcccatga cccccatgaa 2041 gagatcagtg caaacacagg tgtcagagcc cttcatggag tcctggggtg aggagtccct 2101 gccggagcta cccgcagagc agtccctgac ggagtactct gacctcgagg aggctccctc 2161 ggcgcacact ctctatgtgg gccatctgaa cccccagttc tcagtgccgg tgcttgcctg 2221 cctgctgcga gacaccctgg agcggctgga gatgccggtg gcgcgggagc acattgaagt 2281 ggtgaggcgg ccgcggaagg cctatgcact ggtgcaggtg actgtccaca gggacaccct 2341 ggcctccctc ccctggcgcc tgcagacggc cctggaggag cacctaatcc tcaaggagct 2401 ggcagcccgt gggaaggacc tgctattgag tgaggcccaa gggcccttca gccacagaga 2461 ggtaagtggg acttttccca agcaagctcc aaagcctcac cccaagggag agcctctgag 2521 tgggagtggc ctgcagagtg gggatggagg ggtgtctctg gggaagcagg gacaaatctg 2581 caaacttggg ggctgccact caaatgacca tggcttgcgg ctggtactgc cagctttctc 2641 tgggaaaaac agtttgcctc aagctcaagc ccgacgtttg tgtgaagaaa ggccacgagg 2701 ggacctcctc tccttaggtc cttttacatt ccagcctctg ggcctgggag accctagaag 2761 acacaggggc cccgattttc tccttggccc aactcatttg ttcaattgac aaacatgaac 2821 accccctctg tgccaagagt aaggcaggga tgagaggccc agccaggccc ccaggaagcc 2881 ctgcatctgt ggccagagct ggacagccac ccaccgagct gcaaggtggc tgcgctcaga 2941 gctgtgagag aagacaggaa ggtttgccct gctctctggg gacagattaa caggggaagt 3001 gaaatccagg ccgggactta gggagttgga caggcacttg caagggagga cattccaggc 3061 aagggacaca gaatatgcag aggaacctgg gggcttagag ggagtgtcat gtctgcagaa 3121 gggcaaacca tttggtgtcc ctggagctcc cactaaaggc tgcagggggt gctaaggaag 3181 gaagttgggc cagaaggtag ggtaggggcc aggtcaccaa ggctatcatc caaggcaagg 3241 ctgaactgct ggctttattg ggtgggacat gggacgttag gataggtcac tccatgagac 3301 aggtgatttt ggtttctttt ggtgtgaaaa tgatggtgtt taaactgttg cagaactaaa 3361 aggctctgtg gcttacattt caactcaatt tcacatttgt atgaagttta tcctgtttct 3421 aagactgata aattcatctt ctctggggag ctgcagggct ggtagggagg tgcctcagtc 3481 tcctcacccc aacccacgct catgaaagaa ttgtgaggag taacaatctg ccttgaagtt 3541 agcgtcacta aggagggttg gctgggcgcg gtggctcacg cttgtaatcc cagcactttg 3601 ggaggctgag gcgggcagat cacgaggtca ggagatcgag accatggtga aaccccgtct 3661 ctactaaaaa tacaaaaaaa ttagccgggc gtggtggcgg gcccctgtaa tcccagctac 3721 tcgggaggct gaggcaggag aatggcttga acccggaagg cggagcttgc agtgagccga 3781 gatcacgcca ctgcactcca tccagcctgg gtgacagggc gagactctgt ctcaaaaaaa 3841 aaaaaaaaaa aaaaaaaaca ggagggttga catgaaaggg tgagcctgga agcagggagg 3901 tcagggaggg gctcgctggg gaggcccaga ctaggaagtg gccccgagga ggctcacacc 3961 aagccctcga gcagagccca aaccatgaaa ggagattcag gaggcgcaga agaaagtggg 4021 gattagggcg gacttgtcaa tagcccagca agtagtgggc aaaggtttga aatcaggaag 4081 tgggtggggt acctgggagt ccctctccat tcagggtact gcagctctgt cacagggtgc 4141 tgagatacct gctggaatga tctggttctg ggcctcaggg gcctgtctgc aacccaagta 4201 agaaaaaatg ggcccacaca tgtcccagca cccagccctg agaagcagaa atctcttctt 4261 ccccaccagg catcccacag ctcacctggg aagggcccag cttggcaggg aaaggagcgc 4321 tgactggaac cctcgatcca gcagggtttc ctgcctcggc tgcaggaggg tgggcagaac 4381 tgggcccctc ggcctggtga ggggcatcag gatgtccgta agagtcaggc tgcagcaggg 4441 gcctgactgg gggttcttgc agtccttctc agggtcaggg ctcccatttc ctggctggac 4501 ccatacattc attcttgact accaccctag gagaaggagg aggaggagga ggacagtggc 4561 ctgagccctg gccccagtcc aggctctggt gtcccgctgc ccacctggcc tacacacacg 4621 ctgcctgata ggccccaggc ccagcagctg cagagctgcc agggccggcc cagcggcgtg 4681 tgctccgaca gtgccattgt gcaccagcag atcgtgggca aggaccagct cttccagggt 4741 gccttcctgg gcagcgagac ccgcaatatg gagttcaagc ggggtagcgg cgagtacctc 4801 agcctggcct tcaagcacca cgtgcggcgc tacgtgtgcg ccttcctcaa cagcgagggc 4861 ggcagcctgc tcgtgggagt agaggacagc ggcctggtgc agggcatccg ctgcagccac 4921 cgtgacgagg accgcgcacg cctgctggtg gactccatcc tgcagggctt caagcctcag 4981 atctttcccg atgcctacac tctcaccttc atccctgtga tcagtacctc ggagaccagc 5041 gtccccctca aggtgagcct gcaggacagg agggcctctg ggcctgtcat ctgtcatcac 5101 tcagtaagac gatggcctgc actcctgcca ggcagtgctg gggcagggac gggactgggg 5161 gccacaggag aagaggctgg ggatggcccc tgtgccagcc ctgctggcct gccctaagga 5221 atcagtgagc aatgctgagc agcctggcag gatgggggct gccgaccgtg aggggcggcg 5281 cctccagagc tgctgttgcc cctaccaagg tgatccgcct gaccgtgcac acccccaagg 5341 cccagagcca gccgcaactc taccagacag accaggggga ggtgtttctg cggcgcgacg 5401 ggagcatcca gggcccgctg tctgccagcg ccatccagga gtggtgcagg caggtacgga 5461 agctgaggcc agtgggtggg gtggagcgga gctgacccca gaccccttca gccacccact 5521 gagcagccca gggcaagcca ccatggttcc ctgggtcctg catcaccccg ttgaacccaa 5581 ggggttggaa tacaatcaca ccacatccca tactccgcgg gtaggtggct ggtgggaagg 5641 aagaggccca agctctctcc ttttaaaaat ctatgcagtg gccaggcgca gtggctcacg 5701 cctgtaatcc cagcactttg ggaggatgag gcgaacagat cacaaggtca ggagttcgag 5761 accagcctgg ccaacatggt gaaccctcgt ctctactaaa aatacaaaaa ttagctgggc 5821 atggtggcgg gcgcctgtag ttccaaatac tcgagagggt gaggcaggag aatcgatcga 5881 atctgggaag cggaggttgc agtgagccga gatcgcgcca ctgcactcca gcctgggcga 5941 cagaccgaga ctccatctca aaaaaaaaaa aatcctatgc agtatcctcc cttcaggggt 6001 gcctgaaacc cctcaccctc tacttgggca gttaacacac tcgatcttga gtgagggagc 6061 agagagactg gaatgttgag atgtcaccag aaaaccccaa agactataca ctgcatttta 6121 ggggaggccc taaagcggca gagggggcaa gacacagtcc caaggaagag ctttttcaag 6181 agggaaacag agaatggagg acaagggacc aacagtgagg aggcacatgg cctgcccagc 6241 acggaggagg ctcccttcca tggctggcag ccggcagctt ccctcaggct gacacggttg 6301 aaggtggcag caggccgagg ggcctgactt ttcccctagc tgagaaagct ctcaggctcc 6361 tgggctttgc cttcctccct cagtttggcc ccaggtggag gacggacagg cccgagacca 6421 ggcgggcttg gccacatgct tttcccatgt cccctcagag gtggctggtg gagctgggca 6481 agctggaaga gaagatgaag gcgctgatga tggagaagga gcagctccag cagcagctgc 6541 agcagcacgg gcctgtgtcc tgcacctgct gtgtcctgtg agggccctgg ggagcaggca 6601 ggacggcacg gcactctcca cctgagaccc agggatttcc tgtttgagtg taaggccaac 6661 cagtaaagcc catgcgggct gctgagaggc ggacagggac tccttcaaca tggcacatga 6721 gcaggcaccc atgtggcttc aaccctgaca gacccatctg tgtagccaag aaactgctct 6781 cagccctgtc cccaaatgac cttactttca gaaagaatgt gtaaaaccct gcccagagct 6841 cccctagggc taagctataa gggattgtcc ttctccctaa aatgctcatt tggcccaggc 6901 tgaggtctgt gactccagtt ggctacacag tgccagaaag gaatctgtca tctcaggaaa 6961 gcccctcaaa gatggcgagg catatttgat gactgtggtt acagggcaag aggccaccct 7021 gcagccccca cccctgactt gctggaactt gtgactgtca aagctccatt aataaattac 7081 atgcacctgg gacaagaatg gttctttcta ggacactggg tcagccggtc agatgctgca 7141 gggtcatgag tcccaggccc agcccacctc tgtccaggag gcagaggaca gacctgcaag 7201 ggcagggagc ccagcccctc agactccagt ccagctctgt cttaaagacc agggaccgtg 7261 gggcaaagtg ctatgcctct gtgcttcagt ttcttcatct ataagacagt gacaatggcc 7321 aggggcattt tgtcaccatc gggccagtgc cctgtgtcta cgccagctgt ggcacagagc 7381 agcacctcac actaagggtc tcagttcctt tccaagaccc ctctggtcca gtaagaccgt 7441 tagcttaaaa caaacaaaaa aaaccagact cctccagctg cttcctgcct ctggccgttt 7501 ctcctgctgt ctccaccagc tgagccagag gctgcaaagc cagagtctga tcacactcac 7561 gccacacctg cacccatagc cctccaaatt cttcaagagc aaagcccaaa cttgatggcc 7621 tacatggttc tccaccacct agcccaccca acctcaatgt cttccgcccc ttatgtaagc 7681 cacttcagcc acgcccacca acttgtttca tttgcactcc tgcctcgggg cctctgcgct 7741 acatagcggc ctatttcctt tcctcttcac cttcaagtcc atgcttaatt tcccacccac 7801 cctattttaa agacaccacc tcccagcact gccactcccc tgctcacttc cacccttggt 7861 ctccatctat gaactaccac actctgtagc ttatatttgg tgcttccccc actgaataac 7921 tgctctgggg gacaggggtt tgggtatggc tggcatatgg tagacaccca ataaatacct 7981 gctggtgaga caattaagga tactcctaaa tttggggtct gagccaccag aaaatcacca 8041 aaccttgttg aacagggcat ttcacaggac tagtgtt //