LOCUS AY756173 9628 bp DNA linear PRI 29-SEP-2004 DEFINITION Homo sapiens ficolin (collagen/fibrinogen domain containing) 3 (Hakata antigen) (FCN3) gene, complete cds. ACCESSION AY756173 VERSION AY756173.1 GI:52631745 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 9628) AUTHORS Rieder,M.J., Johanson,E.J., da Ponte,S.H., Hastings,N.C., Ahearn,M.O., Bertucci,C.B., Wong,M.W., Yi,Q. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (21-SEP-2004) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA COMMENT To cite this work please use: SeattleSNPs. NHLBI HL66682 Program for Genomic Applications, UW-FHCRC, Seattle, WA (URL: http://pga.gs.washington.edu). FEATURES Location/Qualifiers source 1..9628 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" repeat_region 144..317 /rpt_family="L1" /rpt_type=dispersed variation 262 /frequency="0.01" /replace="t" variation 286 /frequency="0.02" /replace="c" repeat_region 653..948 /rpt_family="Alu" /rpt_type=dispersed variation 741 /frequency="0.03" /replace="a" variation 838 /frequency="0.01" /replace="a" variation 849 /frequency="0.01" /replace="a" repeat_region 1256..1317 /rpt_family="L2" /rpt_type=dispersed variation 1330 /frequency="0.01" /replace="t" repeat_region 1406..1727 /rpt_family="Alu" /rpt_type=dispersed misc_feature 1478..1803 /note="Region not scanned for variation" gene 1932..7682 /gene="FCN3" mRNA join(1932..2028,2305..2400,2747..2791,3236..3268, 3493..3620,5793..5922,6035..6169,7288..7682) /gene="FCN3" /product="ficolin (collagen/fibrinogen domain containing) 3 (Hakata antigen)" CDS join(1938..2028,2305..2400,2747..2791,3236..3268, 3493..3620,5793..5922,6035..6169,7288..7529) /gene="FCN3" /codon_start=1 /product="ficolin (collagen/fibrinogen domain containing) 3 (Hakata antigen)" /protein_id="AAU85296.1" /db_xref="GI:52631746" /translation="MDLLWILPSLWLLLLGGPACLKTQEHPSCPGPRELEASKVVLLP SCPGAPGSPGEKGAPGPQGPPGPPGKMGPKGEPGDPVNLLRCQEGPRNCRELLSQGAT LSGWYHLCLPEGRALPVFCDMDTEGGGWLVFQRRQDGSVDFFRSWSSYRAGFGNQESE FWLGNENLHQLTLQGNWELRVELEDFNGNRTFAHYATFRLLGEVDHYQLALGKFSEGT AGDSLSLHSGRPFTTYDADHDSSNSNCAVIVHGAWWYASCYRSNLNGRYAVSEAAAHK YGIDWASGRGVGHPYRRVRMMLR" repeat_region 2537..2681 /rpt_family="MIR" /rpt_type=dispersed variation 2900 /gene="FCN3" /frequency="0.02" /replace="g" variation 3045 /gene="FCN3" /frequency="0.01" /replace="a" variation 3054 /gene="FCN3" /frequency="0.01" /replace="c" variation 3486 /gene="FCN3" /frequency="0.01" /replace="c" variation 3574 /gene="FCN3" /frequency="0.02" /replace="" variation 3662 /gene="FCN3" /frequency="0.01" /replace="c" variation 3730 /gene="FCN3" /frequency="0.01" /replace="g" repeat_region 3747..3811 /rpt_family="L2" /rpt_type=dispersed repeat_region 3814..3982 /rpt_family="Alu" /rpt_type=dispersed variation 3981 /gene="FCN3" /frequency="0.02" /replace="t" variation 4190 /gene="FCN3" /frequency="0.01" /replace="a" repeat_region 4209..4513 /rpt_family="Alu" /rpt_type=dispersed variation 4235 /gene="FCN3" /frequency="0.24" /replace="a" misc_feature 4440..5046 /gene="FCN3" /note="Region not scanned for variation" repeat_region 4520..4695 /rpt_family="L2" /rpt_type=dispersed repeat_region 4696..5004 /rpt_family="Alu" /rpt_type=dispersed repeat_region 5005..5089 /rpt_family="L2" /rpt_type=dispersed repeat_region 5156..5462 /rpt_family="Alu" /rpt_type=dispersed variation 5414 /gene="FCN3" /frequency="0.02" /replace="t" variation 5459..5467 /gene="FCN3" /frequency="0.63" /replace="" variation 5782 /gene="FCN3" /frequency="0.03" /replace="g" repeat_region 6166..6305 /rpt_family="MIR" /rpt_type=dispersed variation 6282 /gene="FCN3" /frequency="0.01" /replace="t" repeat_region 6307..6450 /rpt_family="MIR" /rpt_type=dispersed variation 6419 /gene="FCN3" /frequency="0.25" /replace="a" repeat_region 6457..6755 /rpt_family="Alu" /rpt_type=dispersed variation 6564 /gene="FCN3" /frequency="0.25" /replace="a" variation 6704 /gene="FCN3" /frequency="0.02" /replace="a" variation 6926 /gene="FCN3" /frequency="0.02" /replace="g" repeat_region 7048..7165 /rpt_family="MIR" /rpt_type=dispersed variation 7245 /gene="FCN3" /frequency="0.01" /replace="g" variation 7379 /gene="FCN3" /frequency="0.01" /replace="t" repeat_region 7696..7884 /rpt_family="CR1" /rpt_type=dispersed repeat_region 7932..8242 /rpt_family="Alu" /rpt_type=dispersed variation 7935..7938 /frequency="0.06" /replace="" variation 7992 /frequency="0.06" /replace="a" repeat_region 8245..8311 /rpt_family="Alu" /rpt_type=dispersed variation 8264 /frequency="0.03" /replace="c" variation 8349 /frequency="0.41" /replace="t" repeat_region 8433..8728 /rpt_family="Alu" /rpt_type=dispersed variation 8455 /frequency="0.05" /replace="g" variation 8720 /frequency="0.09" /replace="a" repeat_region 8885..8989 /rpt_family="MIR" /rpt_type=dispersed repeat_region 8994..9075 /rpt_family="MIR" /rpt_type=dispersed variation 9279 /frequency="0.01" /replace="t" ORIGIN 1 gtctgtgtca gacctctttc tgtgaattta caaaatacat atatacacac ctctagcatt 61 ttaaaaatac aaagtgggat aatgctgtgc atactgtttt gcatttttgc ccctctcatt 121 ttagatcaga ttcaccctgt gagttgtctg aatggtccta attcatgtga atgccatcaa 181 tgactggttg ggtcatttcc acactgatgc ttacaaacag cgccatggta aacaggcttg 241 tctgcagatc ttggcatact cgtgggacag tctggggaag acagattcct agaactggaa 301 ttgcggtctc aggatatccc tctcgcggac acatcctgtc aggcaaacac tgcctccact 361 tcccctgata ccacttgcac ctcagccctc tccataagca ccagggaggt gcagaggagg 421 ccttgaggga gggtttcctg aatgagtgaa tgaatgagcc ctgcctctcc tcccttatca 481 cctgaggtcc ctctccagct caggcctgat ccttcacatc tggaccctgg ctgctgcgtc 541 ctccctggct tcccggcctc caggccttcc tacatgggct tcccgctcaa ttggcgtaca 601 ttagcagctg tttcctaagc ctcacgggac tcaaggttga gcatggagtc actttctttt 661 tttttgagac ggagtttttg ctctttcgcc caggctggag tgcagtggtg cgatctcggc 721 tcattgcaac ctctgccttc gggtttcaag tgattctctt gcctcagcct cctgagtagc 781 tgggattaca ggtgcatgcc accaagcccg gctaattttt gtatttttag tagagacggg 841 gtttcaccgt gttagccagg ctggtctcga acccctgacc tcaggtgatc tgcctgcctc 901 ggactcccaa aatcccggga ttacaggcat gagccaccgc agccagccag aatcactttc 961 ttaatggtgc ttttccctgg cgggggcatg gggcttgggt aaaactctgt tgctctcagc 1021 atataagtgg ccaagagaac agaagtcacg tcccatcact gggcctcagt ttctctttcc 1081 ttattcattt aactctttct tactgagcac ccattttgta ccaggcccat aatgcaataa 1141 taaggattaa tagcaagtcc atgtgaggat cggaggtgac gtcagtatga cgctggaatg 1201 cagtagatgc ccaggaaatg gtagcagttg tcactattca tagcattgac aaggatcagg 1261 gaaggattcc cagtggagat ggctgtagag ctagaccttc atggacagat ggggcttcac 1321 aggtagagac gactgtgaat gtagaggtct ggagagatgg ctggggagcc ctggaagcca 1381 ggatcagaag ttggactctt tcagtgtgcg gtggctcaca cctgtaatcc tagcactttg 1441 ggaggccgag gtgggtggat cacctaaggt caggatttcg agaccagcct ggccaacatg 1501 gtgaaacccc ttctatacta aaaaaaaaaa tacaaaaaat tagctgggct tggtggcgtg 1561 cacccataat cccagctact tgggaggctg aggcaggaga atcacttgaa cccgggaggc 1621 agaggttgca ttggttgcat tgagctgaga gcacgccatt gcattccagc ctgggcaaca 1681 agagtgaaac tccgtctcaa aaaaacaaaa aaacaaaaaa caaaaaacaa aaagatgttg 1741 gactccatcc tggttggata gggcagggat aatgcccttt ctctctgggg ctgaaggagg 1801 aaatactccc accccctgct ggctccagtc tgggtggggt gtccctgggg gacaatggga 1861 ggaagtcttg tttcatgtcc tcccaccagc ctggccccct tataatctgg catccttccc 1921 ctggtgggcc cagcaagatg gatctactgt ggatcctgcc ctccctgtgg cttctcctgc 1981 ttggggggcc tgcctgcctg aagacccagg aacaccccag ctgcccaggt gggcacctag 2041 ggtgccctcc tcaccaaccc actcctcatt ccctcgctgg gtgtcccccc accaaggctc 2101 atcaacctca aggagcaggg tgggagtttc ataatctggg ctctgcatgt aaatatatgc 2161 aaatggatgc aaagcacacg aaaccttgcc agctcaggag acaagcatcc tgacagtggg 2221 aatctgggag acaggaagag aactgaagag gggtctggaa gagacagtct accctgtgcc 2281 caccctgcct gtgtctccct gtaggaccca gggaactgga agccagcaaa gttgtcctcc 2341 tgcccagttg tcccggagct ccaggaagtc ctggggagaa gggagcccca ggtcctcaag 2401 gtgagagggg ctggggagcg ggctgggatc ttgggaatgg ggaaggcagg aaagtagcaa 2461 tttttgtctg tgctgagggg ccacgacaaa ggagcaagga acctactctg tgccagctcc 2521 aggctgggca cccggcatcc taagatcaac tctgccaggt aagtggtttc atccccattc 2581 tgctgaggag gaaagggagg ttcagagagg ataagatatt tgcccgcaat cacaaagtga 2641 gtgaagggtg aaactgggat ttgaacctct ggctccaagt ctcttgtttc tttttggtcc 2701 tgggcatggg gtgggactca ggaaatctct gcctttgtga tttcagggcc acctggacca 2761 ccaggcaaga tgggccccaa gggtgagcca ggtgagtaag tggggctgga ggcctccccg 2821 ctttctttgc ctctgtccct ggactctagg gtgggatctc tgcttggctg ctgtgcctat 2881 gatggctctc tcacagggga atggatggct gggaggagtg ggaaggatta ggagaagggc 2941 ctggctaccc tatgatggcc ctcctattgg ggatggaggg ctgggaggag tggggaggat 3001 taggagaagg gcctgggtac cctatgaagg ccctcctaca gggtttggaa ggctgggagg 3061 agtggagagg attaggagaa gggcctgggt accctatgat ggccctccta cagggtatgg 3121 aaggctggga ggagtgggaa ggattcggaa aagggcctgg gtaccggctc cactggtggc 3181 tcagcgctgg ggtgctgaga catcagagcc aacactcatc ccttctctgg ggcaggagat 3241 ccagtgaacc tgctccggtg ccaggaaggt gaggcagccc ttgcaggagc caggaacttg 3301 ggatcacatg gtgttgggtg ttggcagacc cccaagtgtg gccaagatcc tccccacagc 3361 ctcctcagaa cccttcttca gggacctgaa ggagccaaga gggtccctag ggtcccacac 3421 ttgttccagt gcctgggggt gggggtcagg gaataacctg ggcaccaccc cagtccatct 3481 cccctttccc aggccccaga aactgccggg agctgttgag ccagggcgcc accttgagcg 3541 gctggtacca tctgtgccta cctgagggca gggccctccc agtcttttgt gacatggaca 3601 ccgagggggg cggctggctg gtgagtgtct gagaaatggg ctaacaggcc aggcccactg 3661 gtcacttctc ccccttggcc cctaggggag ccagaaccca ccagagcaag gcatttccta 3721 gaggaattca ctgacaaatg tttagtgagc ccccaatggg acctgaagaa gtatgagggc 3781 ttcacagagg aggtgccatt tgaaaagacc ttaagttgag tgcagtagct cacgcctgta 3841 atcccagcta cttgggaggc tgaggcaaga gaattgcctg aacccaggag gtggaggttg 3901 cagtgagccg agttcttgcc attgcactcc agcctgggtg aaaagagtga aactctgtct 3961 caaaaaaaaa aaaaaaaaaa aatagggtag ggaggggcat tccagctaga agtaaagata 4021 aactcaggga ggcagcagag taaaaggttt gcagggaacg cgtgagtgag ctgagagcag 4081 gcgtgggtgt cggctaaagt ctgccggcac tgacggaaca tggattgagg acctctgtaa 4141 aggccagttc atggaaggca ctaaatgatc aacttaagaa gtgtgcagcg cgcccagacg 4201 cggtggttgg ctggacgtgg tggctcacgc ctatgatccc agcactttgg gaggccaagg 4261 cgggcagatc acctgaggtc aagagttcga gatcagcctg gccaacatgg tgaaacccca 4321 tctttactaa aaatataaaa attagccagg cgtgatggtg ggcgcctgta atccaagtta 4381 ttcaggaggc tgagctggga gaattgcttg aaccccggag gtggtggttg cagtgagcca 4441 agattgagtc actgcactcc agcctgggca acggagtgag actctgtctt aaaaaaaaaa 4501 aaaaaaaaga agagtgtgca gggcaatggg tagccccagg agagttttaa gcaggggagg 4561 ggccaagtag aacttctgtt ttaaaaagat gattcgggct acaccatgaa agatgcactg 4621 cattggggga ccagtggagg cagggacatg gtttaggaag acagcaagga gccaggcagt 4681 aaagacagtg gagcaggcct gacacagtag ctcacacctg taatcccagc actttgggag 4741 gccgaggtgg gtggattgcc tgagctcagg agttcaagac cagcctgggc aacatggcaa 4801 aaccccatct ctactaaaaa tacaaaaaat tagctgggcg tggtggcagg tgcctgtaat 4861 cccagctatg cagaaagcta aggcacgaga attgcttgaa ccagggaggc agaggttgca 4921 gtgagccgag atcacaccac tgtactccag cctggtaaca gggggtgaga ctctatctca 4981 aaaaaataaa taaataaaat aagacagtgg agcaatggaa atagaagtac ttaggttgac 5041 aactctatag gacctggggc ctacttggct tggaggggga ggtggaagac atcagggtaa 5101 ggccaggggt ccagcttggg ctgtgggagt ggcctctcta atgtaaaata tcttggtttt 5161 tttgtttgtt tgtttgtttt gagacggagt cttgctctgc tgcccaggct ggagtgcagt 5221 ggtgtgatct cggctcactg caacctccac ctcccaggtt caagcagttc ttgtgcctca 5281 gcctcctgag tagctggaac tacaggtgtg agccaccaca cccggctaat atttgtattt 5341 ttagtagaga cgggatttca ccatgttggc caggctggtt tcaaactcct gacctcaagt 5401 gatccacccg cctcggcctc ccaaagtgct ggaattacag gcatgagcca ccaagcgtgg 5461 ccaaatatct tggttcttat agtaaatgaa attgggttat tttgactgac acccagcagc 5521 gctggccatc tcctgtgggt ggggacagtg ttttgtcaat tcagtcttcc cagggcttgc 5581 aaggctgtgg catgaagttg agtgtcagta aaagttaaca agggaatgta gagttcatag 5641 aaatattcaa agctaacttg aaggatcccc attttatcaa caggccccaa tccaaagaga 5701 gagtgggtat ccacccaccc ctcacagttc ctgcaccctc agctgccagt gcccagcctg 5761 gagtaatagc tgctgtgccc cccctccccc aggtgtttca gaggcgccag gatggttctg 5821 tggatttctt ccgctcttgg tcctcctaca gagcaggttt tgggaaccaa gagtctgaat 5881 tctggctggg aaatgagaat ttgcaccagc ttactctcca gggtgagttc ccagcagggt 5941 cctggagtct gggggttact gtctgccatc ctgaatccct gccccacccc caagaactga 6001 ggattcctcc atccctgcct ccccttcttt ccaggtaact gggagctgcg ggtagagctg 6061 gaagacttta atggtaaccg tactttcgcc cactatgcga ccttccgcct cctcggtgag 6121 gtagaccact accagctggc actgggcaag ttctcagagg gcactgcagg tgagtgagcc 6181 taaggggagc agaggaagga ggctggatcc tttcccagtg ctgccactgc ccccatgaat 6241 gacccagggc aatcctgtct cctctgtggg ccttagtttc cgcatctgag aaatggcaat 6301 catgaaacag gatggtgcaa cagtgaagaa tttgggatct ggaggcaaac agacctgagt 6361 ttgaatccat ctctgccatt tagtacttat gtgaccttgg gcaagtccta cccctccact 6421 gagcctcagt ttcctcctct ataaaatggg cagggaggcc gggcacggtg gctcatgcct 6481 gtaaccctag cactctggga ggccgaggcg ggcagataac ttgaggtcag gagttcaaac 6541 ccaacctggc caacatggtg aaaccccgtc tctactaaaa atacaaaaaa attagccggg 6601 cgtggtggag ggtgcctgta atcccagcta ctcgggaggc tgaggcagga gaatcactta 6661 aatctgggag gcagaggttg cagcgagcca agagagtgtc actgcactct agcctgggcg 6721 acagagcgag actccatctc agaaaaaaaa aaaaaggcgg ggggagcgca gggaggcaag 6781 gaggaagttt tgggtgccgc ctgaggctct gttgagtgtt agtgttctct gctttggaag 6841 aggaaccacg gaagtcttct ttcagagaaa cagtgactat tggggagaga tttaaaagag 6901 ggaagtggtt atgagggagt gcctcaggga accacctttc ctggccaggc acctaagagg 6961 ttcctcccag cttttcctag cagagttgct cagactggat gggagctgag agaagacaaa 7021 ggagctagag gggggccggg gattctggag ggggtaagac agggggaaaa gctgggagct 7081 ttggagccag acagtcccga gttcaagtcc tgccgctgct tcaaccagcc gagtaaccct 7141 gcgcaaacaa cctggcccct tggtgttgct cgtggggcct gataaaattc aactcttagt 7201 tgctctgaga ctcccatggc attatatctc caaaggtgcc aggcatggtg ctgggcacca 7261 aggtgctttc catcccttcc ctgctagggg attccctgag cctccacagt gggaggccct 7321 ttaccaccta tgacgctgac cacgattcaa gcaacagcaa ctgtgcagtg attgtccacg 7381 gtgcctggtg gtatgcatcc tgttaccgat caaatctcaa tggtcgctat gcagtgtctg 7441 aggctgccgc ccacaaatat ggcattgact gggcctcagg ccgtggtgtg ggccacccct 7501 accgcagggt tcggatgatg cttcgatagg gcactctggc agccagtgcc cttatctctc 7561 ctgtacagct tccggatcgt cagccacctt gcctttgcca accacctctg cttgcctgtc 7621 cacatttaaa aataaaatca ttttagccct ttcaagactc ttccagttac tgggaaaaaa 7681 ccctagaggg cagagcaggg acacaagttt cagctccatt cagggaagaa tttccttcca 7741 gtcaggaaga tggaaaggac agcctctaaa gtagtgaggc ttctgtctct ggaggtgtgc 7801 aagacaaggc cagaggggca tatagtggaa ggactggagg agattcaagc atccattgac 7861 aatttcctga ggctctctgg gtcctgcaag tggatggctt tgtggcagga attgcacaat 7921 tgcacagctt ttttgtttgt ttgtttgttt gtttgttttt gagacgcagt ctcgctctgt 7981 cgcccaggct ggagtgcagt ggcaccatcc tggctcactg caagctctgc ctcccaggtt 8041 cacgccattc tcctgcctca gcctcccgag tagctggaac tacaggcacc cgttaccacg 8101 cccggcgaat ttttttgtat ttttagtaga gacggggttt catcatgtta gccaggatgg 8161 tctcaatctc ctgacctcat gatctgccct cctcggcctc ccaaagtgct gggattacag 8221 gtgtgagcca ctgcgcccgg ccgctttttt tttttttttt tttttgagat ggagtcttgc 8281 tctgtcgccc tgcccaggct ggagtgcaat gagccagagg ggcatacagt ggaaggatta 8341 gaggagatcc aagcatccat tgacaatttc ccgaggccct ctgggtcctg caagtggatg 8401 gctttgtggc aggaattgca caattgcata gctttttttt tttttgagat ggagtcttgc 8461 tctgtcgccc cgcccaggct ggagtgcaat ggcacgatct ccactcaccg caacctccat 8521 ctcccaggtt caagtgattc tcctgcctca gctcccaagt agctgggatc acaggcaggt 8581 gccaccacac ccagctactt ttttttgtat ttttagtaga gacggggttt caccatgttg 8641 gccaggctgg tctcgaactc ctgacctcgt gatccactca tcttggcctc ccaaagtggg 8701 attacaggca tgagccaccg ccctggctgg gaattgcaca gctttctcag cctgtcggtt 8761 gcccatgcct gtcctttgta agttgtctgt tttccactcc agcctctgtt gcaggccaag 8821 ttctcaaact ctaccacttc ctgcctatct cattgggtgt cagttcgaat ccaaggtcaa 8881 accaaggaag gtaccttttt cttccacaag gcaacagggc aatgaaacag ccattgagta 8941 gcatttaagc agtttatttg cccaaagcca cattctagta agtggcagaa ttaaatagtt 9001 aagagtctga caggcggtcc tgggtttgca ccctgctgtc atgtgctgag tgatcctgga 9061 caagttattc aacttaagtc cccagttctt ggtttcaggg tccactgagg cttctaccag 9121 gttgctgcct cactcattaa ttcacacaag aaagttgggg actcttgggg atttgaagct 9181 gagaagctgc tgtagtgcaa agggctgggg ttgactcctt caaggggtgg ctaaagaaat 9241 gtttagagtt gtttagagta ggaagtgctt ctcaggtccc atggccacgt tctgcctaga 9301 agtcaaaggt cagcgggggt ccacagcagg ttgggtcctg gggaaagcag ccccctagtg 9361 acagttaagg ctcagatgcc aagtcccact ccaggactga aggctttcgg gcaagcggcc 9421 tagggtgtag gtttccccca tcccagtccc tccctgcctg cgctcactgg gcccgggagg 9481 acacccattg ttcatcatgc tctgcgcacc ctgatgtctc tagagagcca ttcattcaac 9541 agatacctgc agagcagggc ctgcatatcg aaccttttcc ctagccctgg cctcctcaca 9601 cattttatgt gcacttgctg tgagcagt //