Site Genotype1 AD-pop ED-pop Total-pop Genotype2 AD-pop ED-pop Total-pop Genotype3 AD-pop ED-pop Total-pop AD-chi2 ED-chi2 Total-chi2 000323 CC 10 8 18 CT 4 5 9 TT 9 9 18 9.763 6.523 16.200 000393 AA 21 21 42 AG 2 1 3 GG 0 1 1 0.048 9.521 6.146 000716 AA 9 9 18 AG 5 5 10 GG 9 8 17 7.348 6.523 13.878 000811 CC 7 8 15 CT 4 4 8 TT 9 8 17 7.103 7.200 14.352 000948 GG 4 1 5 GT 2 0 2 TT 15 19 34 11.422 20.000 26.553 002044 CC 22 23 45 CT 1 0 1 TT 1 0 1 9.967 0.000 20.206 002113 * 002306 AA 0 1 1 AG 0 0 0 GG 24 22 46 0.000 23.000 47.000 002826 AA 0 0 0 AG 1 0 1 GG 23 22 45 0.011 0.000 0.006 003285 CC 8 9 17 CT 6 6 12 TT 10 8 18 5.916 5.239 11.245 003387 CC 0 0 0 CG 1 0 1 GG 23 23 46 0.011 0.000 0.005 003464 GG 21 23 44 GT 2 0 2 TT 1 0 1 4.959 0.000 10.729 003544 AA 1 0 1 AG 1 0 1 GG 22 23 45 9.967 0.000 20.206 003555 AA 1 0 1 AG 0 0 0 GG 23 23 46 24.000 0.000 47.000 003596 AA 23 23 46 AT 0 0 0 TT 1 0 1 24.000 0.000 47.000 003748 AA 0 0 0 AG 1 0 1 GG 23 21 44 0.011 0.000 0.006 003828 AA 3 0 3 AG 4 0 4 GG 16 20 36 5.497 0.000 12.883 003879 GG 0 0 0 GT 1 0 1 TT 22 20 42 0.011 0.000 0.006 004135 CC 9 4 13 CT 6 6 12 TT 9 11 20 6.000 2.679 9.252 005238 CC 0 0 0 CT 1 0 1 TT 23 23 46 0.011 0.000 0.005 005256 * 005265 CC 7 10 17 CT 6 5 11 TT 11 8 19 5.662 7.262 13.255 005333 CC 10 8 18 CT 6 5 11 TT 8 9 17 5.916 6.523 12.511 005365 AA 1 0 1 AG 1 0 1 GG 22 22 44 9.967 0.000 19.761 005415 AA 12 8 20 AT 5 4 9 TT 7 10 17 7.646 8.824 16.950 006139 -- 1 0 1 +- 1 0 1 ++ 20 23 43 9.075 0.000 19.316 006142 AA 1 1 2 AG 0 0 0 GG 20 22 42 21.000 23.000 44.000 006321 CC 0 0 0 CT 1 0 1 TT 20 23 43 0.012 0.000 0.006 006347 AA 8 8 16 AG 3 4 7 GG 7 11 18 7.975 9.603 17.737 006531 -- 1 0 1 +- 1 0 1 ++ 20 23 43 9.075 0.000 19.316 006667 CC 18 22 40 CT 0 0 0 TT 1 0 1 19.000 0.000 41.000 008108 CC 21 22 43 CG 1 0 1 GG 1 0 1 9.521 0.000 19.316 008129 GG 21 22 43 GT 1 0 1 TT 2 0 2 14.480 0.000 28.600 008344 AA 1 0 1 AG 0 0 0 GG 23 22 45 24.000 0.000 46.000 008478 AA 2 0 2 AG 1 0 1 GG 21 23 44 14.480 0.000 29.241 008609 CC 21 14 35 CG 2 4 6 GG 1 5 6 4.959 7.987 16.234 008681 AA 1 0 1 AG 1 0 1 GG 21 23 44 9.521 0.000 19.761 008731 AA 0 0 0 AT 1 0 1 TT 23 23 46 0.011 0.000 0.005 008821 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 009003 CC 1 0 1 CT 4 0 4 TT 17 23 40 1.144 0.000 3.673 009007 CC 16 23 39 CT 4 0 4 TT 3 0 3 5.497 0.000 13.977 009088 AA 17 23 40 AG 3 0 3 GG 1 0 1 2.136 0.000 5.825 009364 CC 17 23 40 CT 3 0 3 TT 3 0 3 7.887 0.000 18.288 009475 CC 18 23 41 CT 3 0 3 TT 2 0 2 5.624 0.000 13.222 009551 AA 3 0 3 AG 3 0 3 GG 17 23 40 7.887 0.000 18.288 009578 AA 17 23 40 AT 3 0 3 TT 3 0 3 7.887 0.000 18.288 009780 CC 0 0 0 CT 1 0 1 TT 19 23 42 0.013 0.000 0.006 009814 -- 17 23 40 +- 3 0 3 ++ 3 0 3 7.887 0.000 18.288 009883 AA 22 23 45 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 010309 AA 17 23 40 AG 3 0 3 GG 2 0 2 5.290 0.000 12.894 010377 AA 2 0 2 AT 3 0 3 TT 17 23 40 5.290 0.000 12.894 010525 -- 0 0 0 +- 2 0 2 ++ 21 23 44 0.048 0.000 0.023 010609 CC 0 0 0 CT 1 0 1 TT 23 23 46 0.011 0.000 0.005 010948 CC 16 16 32 CT 2 2 4 TT 4 3 7 12.086 10.032 22.226 011340 CC 0 0 0 CG 1 0 1 GG 22 20 42 0.011 0.000 0.006 011452 AA 5 0 5 AG 4 0 4 GG 14 23 37 7.987 0.000 20.220 011472 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 011854 AA 23 23 46 AG 1 0 1 GG 0 0 0 0.011 0.000 0.005 011902 AA 22 23 45 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 012049 AA 20 23 43 AG 2 0 2 GG 1 0 1 4.707 0.000 10.478 012377 AA 22 23 45 AG 2 0 2 GG 0 0 0 0.045 0.000 0.022 012651 AA 21 12 33 AG 2 4 6 GG 1 7 8 4.959 9.272 19.489 012806 AA 0 1 1 AT 0 3 3 TT 24 19 43 0.000 2.457 6.306 014809 CC 23 21 44 CT 0 1 1 TT 0 0 0 0.000 0.012 0.006 015185 -- 0 0 0 +- 1 0 1 ++ 23 22 45 0.011 0.000 0.006 015452 AA 0 0 0 AC 0 1 1 CC 24 21 45 0.000 0.012 0.006 015502 CC 21 22 43 CT 2 0 2 TT 1 0 1 4.959 0.000 10.478 015584 AA 17 22 39 AG 3 0 3 GG 4 0 4 10.022 0.000 21.916 015610 AA 2 0 2 AT 0 0 0 TT 22 22 44 24.000 0.000 46.000 015751 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 016095 CC 19 23 42 CT 1 0 1 TT 2 0 2 13.192 0.000 27.959 016171 AA 0 0 0 AG 0 3 3 GG 22 20 42 0.000 0.112 0.054 016780 -- 7 13 20 +- 7 4 11 ++ 10 5 15 3.984 7.425 12.249 016846 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 016951 CC 21 23 44 CT 1 0 1 TT 2 0 2 14.480 0.000 29.241 017007 AA 2 0 2 AG 1 0 1 GG 21 23 44 14.480 0.000 29.241 017170 AA 10 5 15 AG 7 3 10 GG 7 15 22 3.984 10.583 14.994 017264 CC 19 23 42 CT 1 0 1 TT 0 0 0 0.013 0.000 0.006 017371 CC 19 23 42 CT 0 0 0 TT 1 0 1 20.000 0.000 43.000 017796 CC 21 23 44 CT 0 0 0 TT 2 0 2 23.000 0.000 46.000 017802 AA 1 0 1 AG 1 0 1 GG 21 23 44 9.521 0.000 19.761 017851 AA 3 0 3 AG 1 0 1 GG 19 23 42 15.902 0.000 32.875 018131 -- 1 0 1 +- 1 0 1 ++ 19 22 41 8.629 0.000 18.427 019910 AA 24 18 42 AG 0 2 2 GG 0 3 3 0.000 11.185 24.823 020465 CC 20 18 38 CT 0 0 0 TT 2 0 2 22.000 0.000 40.000 021511 CC 23 23 46 CT 0 0 0 TT 1 0 1 24.000 0.000 47.000 021554 AA 7 11 18 AC 6 2 8 CC 9 4 13 4.455 8.731 13.251 021975 AA 18 13 31 AG 2 4 6 GG 1 6 7 4.203 8.746 16.467 022592 CC 22 22 44 CT 0 0 0 TT 1 0 1 23.000 0.000 45.000 022594 AA 20 22 42 AG 1 0 1 GG 2 0 2 13.836 0.000 27.959 022880 -- 2 0 2 +- 1 0 1 ++ 20 22 42 13.836 0.000 27.959 023398 CC 2 0 2 CT 3 0 3 TT 18 22 40 5.624 0.000 12.894 023749 CC 0 0 0 CT 0 2 2 TT 22 21 43 0.000 0.048 0.023 024633 CC 21 22 43 CG 0 0 0 GG 1 0 1 22.000 0.000 44.000 024664 AA 1 0 1 AC 1 0 1 CC 19 22 41 8.629 0.000 18.427 024769 CC 0 0 0 CT 1 0 1 TT 23 22 45 0.011 0.000 0.006 024925 AA 23 22 45 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 025460 GG 21 22 43 GT 2 0 2 TT 0 0 0 0.048 0.000 0.023 026211 CC 12 16 28 CG 6 4 10 GG 5 3 8 4.154 5.497 9.898 026273 AA 1 0 1 AC 1 0 1 CC 21 23 44 9.521 0.000 19.761 026750 AA 17 23 40 AC 1 0 1 CC 1 0 1 7.736 0.000 17.982 026793 GG 0 0 0 GT 1 0 1 TT 17 23 40 0.015 0.000 0.006 026892 CC 16 22 38 CT 1 0 1 TT 1 0 1 7.289 0.000 17.092 027151 CC 19 23 42 CT 1 0 1 TT 0 0 0 0.013 0.000 0.006 027214 CC 20 22 42 CT 0 1 1 TT 0 0 0 0.000 0.011 0.006 027226 CC 3 4 7 CT 5 3 8 TT 12 16 28 2.783 9.467 11.244 027306 CC 20 23 43 CT 1 0 1 TT 0 0 0 0.012 0.000 0.006 027501 CC 21 23 44 CT 1 0 1 TT 1 0 1 9.521 0.000 19.761 027517 GG 22 23 45 GT 1 0 1 TT 0 0 0 0.011 0.000 0.006 027842 AA 0 0 0 AG 1 0 1 GG 22 20 42 0.011 0.000 0.006 028158 CC 24 19 43 CT 0 1 1 TT 0 0 0 0.000 0.013 0.006 028410 AA 23 22 45 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 028427 CC 23 22 45 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 028585 CC 1 0 1 CT 1 0 1 TT 22 23 45 9.967 0.000 20.206 028671 CC 22 23 45 CT 1 0 1 TT 1 0 1 9.967 0.000 20.206 029064 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 029144 AA 23 23 46 AG 1 0 1 GG 0 0 0 0.011 0.000 0.005 029287 CC 2 3 5 CG 2 4 6 GG 20 16 36 9.197 5.497 14.118 029317 CC 22 22 44 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 029436 -- 21 21 42 +- 1 0 1 ++ 0 0 0 0.012 0.000 0.006 029548 AA 0 0 0 AG 1 0 1 GG 22 22 44 0.011 0.000 0.006 029552 CC 0 0 0 CT 2 0 2 TT 21 22 43 0.048 0.000 0.023 029555 AA 0 0 0 AG 1 0 1 GG 22 22 44 0.011 0.000 0.006 029617 AA 0 0 0 AG 1 0 1 GG 22 23 45 0.011 0.000 0.006 029766 AA 21 21 42 AT 1 0 1 TT 1 0 1 9.521 0.000 18.871 029816 CC 21 21 42 CT 1 0 1 TT 1 0 1 9.521 0.000 18.871 030191 CC 19 23 42 CT 1 0 1 TT 0 0 0 0.013 0.000 0.006 030197 CC 4 3 7 CT 5 4 9 TT 11 16 27 3.701 5.497 9.331 030564 CC 0 0 0 CT 1 0 1 TT 23 23 46 0.011 0.000 0.005 030634 AA 21 22 43 AG 1 0 1 GG 1 0 1 9.521 0.000 19.316 030662 GG 22 22 44 GT 1 0 1 TT 0 0 0 0.011 0.000 0.006 030893 AA 0 1 1 AG 0 2 2 GG 24 19 43 0.000 4.455 10.478 031089 CC 4 2 6 CT 3 4 7 TT 15 16 31 8.909 3.327 12.366 031168 -- 22 22 44 +- 2 0 2 ++ 0 0 0 0.045 0.000 0.023 031206 AA 16 16 32 AG 4 4 8 GG 4 2 6 7.407 3.327 10.995 031922 CC 22 23 45 CT 2 0 2 TT 0 0 0 0.045 0.000 0.022 032113 AA 23 22 45 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 032922 AA 22 23 45 AC 1 0 1 CC 0 0 0 0.011 0.000 0.006 033403 AA 0 0 0 AC 0 1 1 CC 24 21 45 0.000 0.012 0.006 033614 AA 5 2 7 AG 6 4 10 GG 13 16 29 4.594 3.327 8.755 034508 CC 0 0 0 CT 1 0 1 TT 23 23 46 0.011 0.000 0.005 034569 CC 22 23 45 CT 0 0 0 TT 1 0 1 23.000 0.000 46.000 035124 CC 18 20 38 CG 1 0 1 GG 4 2 6 17.085 22.000 37.272 035243 CC 18 20 38 CG 1 0 1 GG 4 2 6 17.085 22.000 37.272 Note: AD: African_Descent ED: European_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 006139: A 006531: CA 009814: CAAA 010525: A 015185: tagt 016780: T 018131: AAT 022880: A 029436: A 031168: A Tri-allelic sites: Site Genotype AD-pop ED-pop Total-pop 002113 AA 1 0 1 002113 AG 0 0 0 002113 AT 0 0 0 002113 GG 23 22 45 002113 GT 0 1 1 002113 TT 0 0 0 005256 AA 7 9 16 005256 AC 6 5 11 005256 AG 0 0 0 005256 CC 11 8 19 005256 CG 0 0 0 005256 GG 0 1 1