Site Genotype1 AD-pop ED-pop Total-pop Genotype2 AD-pop ED-pop Total-pop Genotype3 AD-pop ED-pop Total-pop AD-chi2 ED-chi2 Total-chi2 001263 CC 19 22 41 CT 4 0 4 TT 1 0 1 1.361 0.000 3.784 001389 CC 23 22 45 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 002289 AA 2 0 2 AG 1 0 1 GG 19 23 42 13.192 0.000 27.959 002290 AA 2 0 2 AG 1 0 1 GG 19 23 42 13.192 0.000 27.959 002621 AA 0 0 0 AG 2 0 2 GG 15 23 38 0.066 0.000 0.026 002966 -- 1 0 1 +- 0 0 0 ++ 23 23 46 24.000 0.000 47.000 003386 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 003560 AA 0 0 0 AG 2 0 2 GG 22 23 45 0.045 0.000 0.022 010186 AA 0 0 0 AG 2 0 2 GG 22 23 45 0.045 0.000 0.022 016292 CC 19 22 41 CT 2 0 2 TT 0 0 0 0.053 0.000 0.024 016367 CC 0 0 0 CG 1 1 2 GG 19 21 40 0.013 0.012 0.025 016715 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 017223 AA 20 19 39 AG 0 1 1 GG 0 0 0 0.000 0.013 0.006 017345 CC 20 22 42 CT 2 0 2 TT 0 0 0 0.050 0.000 0.024 025088 GG 23 23 46 GT 1 0 1 TT 0 0 0 0.011 0.000 0.005 025167 AA 0 1 1 AG 1 1 2 GG 23 21 44 0.011 9.521 10.729 025226 CC 22 23 45 CT 2 0 2 TT 0 0 0 0.045 0.000 0.022 026489 GG 18 22 40 GT 2 0 2 TT 0 0 0 0.055 0.000 0.025 027257 AA 24 16 40 AC 0 1 1 CC 0 1 1 0.000 7.289 17.982 027636 CC 1 0 1 CT 4 0 4 TT 19 23 42 1.361 0.000 3.895 027892 CC 19 23 42 CT 4 0 4 TT 1 0 1 1.361 0.000 3.895 028722 AA 0 0 0 AG 1 0 1 GG 22 22 44 0.011 0.000 0.006 028977 AA 0 0 0 AG 1 0 1 GG 22 23 45 0.011 0.000 0.006 028997 CC 0 1 1 CG 0 1 1 GG 23 21 44 0.000 9.521 19.761 029216 GG 21 23 44 GT 2 0 2 TT 0 0 0 0.048 0.000 0.023 029389 CC 22 23 45 CT 0 0 0 TT 1 0 1 23.000 0.000 46.000 033426 AA 22 23 45 AC 2 0 2 CC 0 0 0 0.045 0.000 0.022 033427 AA 24 22 46 AT 0 1 1 TT 0 0 0 0.000 0.011 0.005 033438 AA 22 23 45 AT 2 0 2 TT 0 0 0 0.045 0.000 0.022 039144 AA 0 0 0 AC 1 0 1 CC 20 19 39 0.012 0.000 0.006 040893 AA 18 20 38 AG 1 0 1 GG 0 0 0 0.014 0.000 0.007 041574 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 055941 CC 5 14 19 CG 3 2 5 GG 15 4 19 10.583 10.756 25.326 059122 AA 4 3 7 AG 3 2 5 GG 15 14 29 8.909 8.872 17.723 059225 AA 0 0 0 AG 2 0 2 GG 20 20 40 0.050 0.000 0.025 059481 -- 0 0 0 +- 1 0 1 ++ 21 20 41 0.012 0.000 0.006 060320 CC 16 22 38 CG 4 0 4 GG 1 0 1 1.037 0.000 3.452 064646 CC 0 0 0 CT 2 0 2 TT 21 18 39 0.048 0.000 0.026 069308 AA 0 0 0 AG 0 2 2 GG 22 18 40 0.000 0.055 0.025 069384 AA 0 0 0 AG 1 0 1 GG 21 20 41 0.012 0.000 0.006 069583 CC 1 0 1 CT 0 0 0 TT 22 21 43 23.000 0.000 44.000 070739 AA 6 3 9 AG 4 2 6 GG 14 18 32 9.375 11.185 20.740 071032 CC 0 0 0 CT 2 0 2 TT 20 23 43 0.050 0.000 0.023 071159 AA 6 3 9 AG 5 2 7 GG 12 18 30 6.546 11.185 17.428 076817 AA 0 0 0 AG 2 0 2 GG 20 18 38 0.050 0.000 0.026 077366 CC 20 21 41 CT 2 0 2 TT 0 0 0 0.050 0.000 0.024 077465 AA 20 21 41 AG 2 0 2 GG 0 0 0 0.050 0.000 0.024 078327 AA 0 0 0 AG 2 0 2 GG 20 19 39 0.050 0.000 0.026 093110 AA 0 0 0 AG 2 0 2 GG 22 23 45 0.045 0.000 0.022 095667 CC 19 23 42 CT 1 0 1 TT 0 0 0 0.013 0.000 0.006 095826 CC 8 16 24 CG 4 3 7 GG 12 4 16 10.364 9.467 22.587 095910 AA 22 22 44 AC 1 1 2 CC 1 0 1 9.967 0.011 10.729 097912 CC 1 0 1 CT 0 1 1 TT 22 20 42 23.000 0.012 18.871 118673 CC 2 0 2 CG 1 0 1 GG 21 23 44 14.480 0.000 29.241 120140 AA 20 18 38 AG 2 0 2 GG 0 0 0 0.050 0.000 0.026 120679 AA 23 21 44 AG 1 1 2 GG 0 1 1 0.011 9.521 10.729 122021 AA 16 4 20 AT 4 4 8 TT 4 15 19 7.407 6.933 20.437 122266 AA 23 23 46 AG 0 0 0 GG 1 0 1 24.000 0.000 47.000 123554 AA 0 0 0 AG 2 0 2 GG 20 19 39 0.050 0.000 0.026 123888 CC 16 4 20 CT 4 3 7 TT 4 14 18 7.407 8.348 21.317 125247 AA 8 16 24 AT 0 3 3 TT 16 4 20 24.000 9.467 35.690 125317 CC 24 21 45 CG 0 1 1 GG 0 1 1 0.000 9.521 20.206 125413 CC 13 18 31 CT 4 1 5 TT 7 4 11 9.967 17.085 25.750 125487 AA 24 22 46 AG 0 0 0 GG 0 1 1 0.000 23.000 47.000 126174 CC 24 20 44 CT 0 2 2 TT 0 0 0 0.000 0.050 0.023 127121 AA 21 22 43 AG 1 1 2 GG 2 0 2 14.480 0.011 19.489 127376 AA 1 0 1 AG 3 0 3 GG 17 22 39 2.136 0.000 5.665 127386 AA 17 22 39 AG 3 0 3 GG 1 0 1 2.136 0.000 5.665 127390 AA 21 21 42 AT 0 1 1 TT 0 0 0 0.000 0.012 0.006 127537 AA 0 0 0 AG 1 0 1 GG 20 21 41 0.012 0.000 0.006 127609 -- 21 20 41 +- 0 1 1 ++ 0 1 1 0.000 9.075 18.427 130120 AA 1 0 1 AG 2 0 2 GG 18 23 41 4.203 0.000 9.977 130670 CC 0 0 0 CT 3 0 3 TT 20 22 42 0.112 0.000 0.054 161469 AA 0 0 0 AG 2 0 2 GG 22 23 45 0.045 0.000 0.022 161500 CC 0 1 1 CT 0 0 0 TT 24 22 46 0.000 23.000 47.000 161758 AA 0 1 1 AT 0 0 0 TT 24 22 46 0.000 23.000 47.000 161767 CC 21 23 44 CT 3 0 3 TT 0 0 0 0.107 0.000 0.051 161952 CC 21 23 44 CT 3 0 3 TT 0 0 0 0.107 0.000 0.051 162270 -- 0 1 1 +- 0 1 1 ++ 17 21 38 0.000 9.521 17.092 163006 AA 0 1 1 AG 0 1 1 GG 24 21 45 0.000 9.521 20.206 163593 AA 23 23 46 AG 1 0 1 GG 0 0 0 0.011 0.000 0.005 163597 AA 0 1 1 AG 0 0 0 GG 24 22 46 0.000 23.000 47.000 163669 AA 0 0 0 AG 2 0 2 GG 22 23 45 0.045 0.000 0.022 163682 GG 0 0 0 GT 3 0 3 TT 21 23 44 0.107 0.000 0.051 163685 AA 1 0 1 AG 3 0 3 GG 20 23 43 2.617 0.000 6.306 165145 GG 22 15 37 GT 0 2 2 TT 0 0 0 0.000 0.066 0.027 165293 AA 19 23 42 AG 2 0 2 GG 1 0 1 4.455 0.000 10.228 165607 CC 1 0 1 CT 0 0 0 TT 22 23 45 23.000 0.000 46.000 187597 CC 24 20 44 CT 0 1 1 TT 0 0 0 0.000 0.012 0.006 187661 AA 0 1 1 AG 1 2 3 GG 23 18 41 0.011 4.203 5.985 187828 AA 21 21 42 AG 3 0 3 GG 0 0 0 0.107 0.000 0.054 188288 CC 21 23 44 CT 3 0 3 TT 0 0 0 0.107 0.000 0.051 189406 -- 1 0 1 +- 0 0 0 ++ 23 23 46 24.000 0.000 47.000 189551 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 189931 AA 4 15 19 AG 4 3 7 GG 16 4 20 7.407 8.909 22.252 190119 GG 3 0 3 GT 2 0 2 TT 19 21 40 11.760 0.000 23.693 190196 CC 3 0 3 CT 2 0 2 TT 19 23 42 11.760 0.000 24.823 190426 AA 6 15 21 AG 7 4 11 GG 11 4 15 3.654 6.933 12.913 Note: AD: African_Descent ED: European_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 002966: t 059481: a 127609: atctattctcgtgagaaggc 162270: cct 189406: tccagtctgccatatcac