************************************************************* **** **** **** Output from PHASE v2.0 **** **** Code by M Stephens, with contributions from N Li **** **** **** ************************************************************* BEGIN COMMAND_LINE /home/qyi/lib/phase/PHASE2 -d1 f13a1.phase.inp f13a1.phase.out END COMMAND_LINE BEGIN OUTFILE_LIST f13a1.phase.out_freqs : haplotype frequency estimates f13a1.phase.out_pairs : most likely haplotype pairs for each individual f13a1.phase.out_recom : estimates of recombination parameters f13a1.phase.out_monitor : file for monitoring convergence END OUTFILE_LIST BEGIN INPUT_SUMMARY Number of Individuals: 47 Number of Loci: 128 Positions of loci: 253 309 1423 1985 2028 2348 2776 2920 2951 3044 3267 3276 3637 3793 3813 3824 4377 5046 5099 5212 5225 5230 7038 7043 7161 7282 7325 7341 7430 7498 8280 8530 8591 8801 8810 8922 8936 9265 19879 19931 19966 20138 20241 30528 30599 30748 30949 31019 55875 56626 56848 71603 71675 71904 72213 72268 72679 72896 72932 72976 73069 73073 73266 73478 73535 73560 73880 73904 74113 81400 81899 98573 98704 99198 99887 100444 100800 101080 101252 111652 111763 111977 112046 112263 124987 125000 125146 125391 126580 127042 127043 127258 140579 140686 141102 141416 141588 141658 148010 148318 148328 148537 148606 148694 156655 165013 165038 165230 165306 165399 170717 170779 170976 171047 171050 171180 171235 171368 176866 176884 177424 177447 177461 177495 177556 177778 178078 178330 END INPUT_SUMMARY List of haplotypes found in best reconstruction, with counts. (See file f13a1.phase.out_freqs for haplotype population frequency estimates) BEGIN LIST_SUMMARY 1 ACCGGCATGGGCTCGGTCGCACATCCCTGDAAGTGCTITAACITAGACCGAGCDCAATGTTCCAACCGGAGICTGAAAGCTGCCTIGGTCCGGAGCCGGCADCAGCGCCCTGGGGGGAGCGTCAAGAG 1.000000 2 ACCGGCGCAGTCTTACGTCTATATAGCTGDAAGTGCTIAAACITAGACCGAGCDCAATGTTCCAACCGGGAICTTAAAGCCTCCTIGGTCCGGAGTCGACGDCAGCGCCCTGGGGGGAGCGTCAAGAG 1.000000 3 ACCGGCGCGGGCTTACGTCTATATAGCTGDAAGTGCTITAACITGGACAGAGCDCAATGTTCCAGCCGTGGICTGAAAGCTGCCTIGGTCCGAGGTGGGCADCAGGGTCTTGGGGGGAATAGCGGGGG 1.000000 4 ACCCGCGCGGGCTCGGGTCTATATCCCTGIAACGTTCDTAATITAGGCCGAATICAACACCCCGGTTGGGGIAAGGAAGCTGCCTIGGTCCGGAGTCGGCADCAGGGTCTTGGGGGGAATAGCGGGGG 1.000000 5 ACCCGCGCGGGCTCGGGTCTATCGCCTTGDAGGTGCCITAACITGGACCGAGCDCAATGTTCCAACCGGAGICTGAAAATTGGCTIGGTCCGGAGTCGGCADCAGCGCCCTGGGGGGAGCGTCAAGAG 1.000000 6 ACCCGCGCGGGCTCGGTTCTATATCCCTGIAACGTTCDTAACITAGACCGAGCDCAATGTTCCAACCGGAGICTGAAAGCTGCCTIGGTCCGGAGCCGGTADCGAGGTCTTGGGGGGAATAGCGGGGG 1.000000 7 ACTGGCACAGGCCCGGGCGCACCGCCCTADAAGGGTCDTAGCDTGTACCGAGCDCAATGTTCCAACCGGAGIAAGGAAGCTGCTTDGACCCGGAGTCGGCADCAGGGTCTTGGGGGGAATAGCGGGGG 1.000000 8 ACTGGCACAGTCTTACGTCTATATAGCTGDAAGTGCTITAACITAGACCGAATICAACACCCCAACCGGGGICTGAAAATTGCCCIGGTCCGGAGTCGGCADCAGGGTCTTGGGGGGAATAGCGGGGG 1.000000 9 ACTGGCACAGTCTTACGTCTATATAGCTGDAAGTGCTITAACICAGACCGAGCDCAATGTTCCAGCCGGGGIAAGGAAGCTGCCTIGGTCCGAAATCAGCAICAGCGCCCTGGGGGGAGCGTCAAGAG 1.000000 10 ACTGGCACAGTCTTACGTCTATATCCCTGIAACGTTCDTAACITAGACCGAATICAACACCCCGGTTGGGGICTGAAAATTGGCCIGGTCCGAAATCAGCAICAGCACCCTGGGGGGGATAGTGGGGG 1.000000 11 ACTGGCACAGTCTTACGCGCGCCGAGCTGDAAGTGCTITGATITAGGGCGAACDTAGCACCCCGGTCGGGGICTTAAAGCTGCCTIGGTCCGAAGTCGGCADAAGCGCCCTGGGGGGAATAGTGGGGG 1.000000 12 ACTGGCACGCTCTCGGGCGCACATCCCCGDAAGGGCTITAGCDTAGGCAGGATDTTACACCTTGGTCGGAGDCAGACTGCTGCCTIGGTCCGGAGTCGGCADAAGCGCATAGCGCAAAGTAGCAGGGT 1.000000 13 ACTGGCGCGGGCTTACGTCTATATAGCTGDAAGTGCTITAGCDTGTACCGAGCDCAATGTTCCAACCGGAGIAAGGAAGCTGCCTDGACCCGGAGTCGACGDCAGCACCCTGGGGGGAATAGTGGGGG 1.000000 14 ACTGGCGCGGGCTCGGGTCTATATCCCTGDAACGTTCDTAGCDTGTACAGGATDTTACACCTTGGTCGGGGICTTAAAGCTTCCTIGGTTTAGAGTCGGTADCGGCGCATAGCACAAAATAGTGGGGG 1.000000 15 ACTGGAGCGGGCTCGGGTCTATATCCCTGIAACGTTCDTAGCDTGTACCGAGCDCAATGTTCCAGCCATAGICTGAAAGCTGCCTIGGCCCGGAGTCGGCAICAGCACCCTGGGGGGAATAGTGGGGG 1.000000 16 ACTGACGCGGGCTTACGTCTATATAGCTGDAAGTGCTITGATITAGGGCGAGCDCAATGTTCCAACCGGGGICTGAAAATTGCCTIGGTCCGGAGTCGGCADCAGGGTCTAGCGCAAAATAGCGGGGG 1.000000 17 ACTGACGCGGTCTTACGTCTATATAGCTGIAACGTTCDTAACICAGACCGAATICAACACCCCGGTTGGGGICTGAAAGCCTCCTIGGTCCGGAGCCGGTADCGGCGCCCTGGGGGGAGCGTCAAGAG 2.000000 18 ACTGAAACGGGATTACGTCTATATAGCTGDAAGTGCTITAACITAGACCGAATDTTACACCTTGGTCGGGGICTTAAAGCTTCCTIGGTTTAGAGTCGGCAICAGCGCCCTGGGGGGAATAGTGGGGG 1.000000 19 ACTGAAACGGGATTACGTCTATATAGCTGDAAGTGCTITAACITGGACAGGATDTTACACCTTGGTCGGGGICTTAAAGTTGGCCIGGTCCGAAATCAGCADAAGCGCATAGCACAAAATAGCGGGGG 1.000000 20 ACTGAAACGGGATTACGTCTATATAGCTGDAAGGTTCDTAACICAGACCGAATICAACACCCCGGTTGGGGICTTAAAGCTTCCTIGGTCCGGAGTCGGCADCGGCGCCCTGGGGGGAGCGTCAAGAG 1.000000 21 ACTGAAACGGTCTCGGGTCTATATCCCTGIAACGTTCDTAGCDTGTACCGAGCDCAATGTTCCAGCCATGAIAAGGAAGCTGCCTDGACCCGGAGTCGGTADCGGCACCCTGGGGGGGATAGTGGGGG 1.000000 22 ACTGAAACGGTCTCGGGTCTATATCCCTGIAACGTTCDTAGCDTGTACCGAGCDCAATGTTCCAGCCATAGICTTAAAGCTTCCTIGGTTTAGAGTCGGTADCGGCACCCTGGGGGGGATAGTGGGGG 1.000000 23 ACTGAAGCGGGCTCGGGTCTATATCCCTGIAACGTTCDTAGCDTGTACCGAGCDCAATGTTCCAGCCATAGICTTAAAGCTTCCTIGGTTTAGAGTCGGTADCGGCACCCTGGGGGGGATAGTGGGGG 1.000000 24 ACTGAAGCGGGCTCGGGTCTATATCCCTGIAACGTTCDTAGCDTGTACCAAGCDCAATGTTCCAACCGGAGIAAGGAAGCTGCTTDGACCCGGAGTCGACGDCAGCACCCTGGGGGGAATAGTGGGGG 1.000000 25 ACTGAAGCGGGCTCGGGTCTATATCCCTGIAACGTTCDAAACITGTACCGAATDTTACACCCCGGTCGGGAIAAGGAAGCTGCCTDGACCCGGAGTCGGCADCAGCACCCTGGGGGGGATAGTGGGGG 1.000000 26 ACTGAAGCGGGCTCGGTTCTATATCGCTADGAGTGCTITAACITGGACCGAACDTAGCACCCCGGTCGGGGICTGAAAGCCGCCTIGGTCCGAGGTCGGCADCAGCGCCCTGGGGGGAATAGTGGGGG 1.000000 27 CCCGGCACGGGCTTACGTCTATATAGCTGDAAGTGCTITAACICAGACCGAATDTTACACCTCGGCCGGGGICTGAAAGCCGCCTIGGTCCGAAATCAGCADCAGCGCCCTGGGGGGAATAGTGGGGG 1.000000 28 CCTGGCACGGGCTTACGTCTATATAGCTGDAAGTGCTITAACITGGACAGAACDCAACACCCCGGTCGGGGICAGAAAGCTGCCTIGGTCCGGAGTCGGTADCGGCGCATATCGCAAAGTAGCAGGGT 1.000000 29 CCTGGCACGGGCTTACGTCTATATAGCTGDAAGTGCTITAATITAGGCCGAATDTTACACCTCGGTCGGGGICAGACTGCTGCCTICGTCTGAGGTGGGCADCAGGGTCTTGGGGGGAATAGCGGGGG 1.000000 30 CCTGGCACGGTCTCGGTCGCGCCGCGCTADAGGTGCTITAACITAGACCGAATICAACACCCCGGTTGGGGICTGAAAATTGGCCIGGTCCGAAATCAGCAICAGCGCCCTGGGGGGAATAGTGGGGG 1.000000 31 CCTGGCACGGTCTCGGTCGCGCCGCGCTADAGGTGCTITAGCDTGTACCGAGCDCAATGTTCCAGCCATAGDCAGACTGCTGCCTIGGTCTAGAGTCGGTADCAGGGTCTTGGGGGGAATAGCGGGGG 1.000000 32 CCTGGCATGGGCTCGGGCGCACCGCCTTGDAGGTGCCITAACITGGACCGAACDTAGCACCCCGGTCGGGGICTGAAAGCCGCCTIGGTCCGAGGTCGGCADCAGGGTCTTGGGGGGAATAGCGGGGG 1.000000 33 CCTGGCATGGGCTCGGTCGCGCCGCGCTADGAGTGCTITAACICAGACCGAGCDCAATGTTCCAGCCATAGIAAGGAAGCTGCCTDGACCCGGAGTCGGCADCAGCACCCTGGGGGGGATAGTGGGGG 1.000000 34 CCTGGCATGGGCTCGGTCGCGCCGCGCTADGAGTGCTITAACICAGACCGAGCDCAATGTTCCAGCCATAGIAAGGAAGCTGCCTDGACCCGAAATCAGCADAAGCGCATAGCGCAAAATAGCGGGGG 1.000000 35 CCTGGCGCGGGCTTACGTCTATATAGCTGDAAGTGCTITAGCDTGTACCGAATDTTACACCCCGGTCGGGAIAAGGAAGCTGCCTDGACCCGGAGTCGGCADCAGCACCCTGGGGGGGATAGTGGGGG 1.000000 36 CCTGGCGCGGGCTTACGTCTATATAGCTGDAAGTGCTITAGCDTGTACCGAATDTTACACCCCGGTCGGGAIAAGGAAGCTGCCTDGACCCGGAGTCGGTADCGGCACCCTGGGGGGGATAGTGGGGG 1.000000 37 CCTGGCGCGGGCTCGGGTCTATATAGCTGDAAGTGCTITAGCDTGTACCGAGCDCAATGTTCCAGCCAGAGICTTAAAGCCTCCTIGGTCCGAAGTCGACGDCAGGGTCTTGGGGGGAATAGTGGGGG 1.000000 38 CCTGGCGCGGGCTCGGGTCTATATAGCTGDAAGTGCTITAGCDTGTACCGAGCDCAATGTTCCAGCCAGAGICTTAAAGCCTCCTIGGTCCGAAGTCGACGDCAGCACCCAGGGGGGGATAGTGGGGG 1.000000 39 CCTGGCGCGGGCTCGGGTCTATATCCCTGDAAGGTTCDTAGCDTGTACAGGATDTTACACCTTGGTCGGAGICTGAAAATTGCCCIGGTCCGGAGTCGGCADCAGCACCCTGGGGGGGATAGTGGGGG 1.000000 40 CCTGGCGCGGGCTCGGGTCTATCTCCCTGDAAGGTTCDTGATITAGGGCGAATDTTACACCTCGGCCGGGGICTGAAAGCCGCCTIGGTCCGGAGTGGGCAICAGGGTCTTGGGGGGAATAGCGGGGG 1.000000 41 CCTGGCGCGGTCTTACGTCTATATAGCTGDAAGTGCTITAACITAGACCGAACDTAGCACCCCGGTCGGGGICTGAAAGCTGCCTIGGTCCGGAGTCGGCAICAGCACCCTGGGGGGGATAGTGGGGG 1.000000 42 CCTGGCGCGGTCTTACGTCTATATAGCTGDAAGTGCTITAACITAGACCGAACDTAGCACCCCGGTCGGGAIAAGAAAGCTGCCTIGGTCCGAAATCAGCAICAGGGTCTTGGGGGGGATAGTGGGGG 1.000000 43 CGCGGCACGGGCTTACGTCTATATAGCTGDAAGTGCTITAACICAGACCGAATDTTACACCTCGGCCGGGGICTGAAAGCCGCCTIGGTCCGAAATCAGCAICAGGGTCTTGGGGGGGATAGTGGGGG 1.000000 44 CGCGGCACGGGCTTACGTCTATATAGCTGDAAGTGCTITAATITAGGCCGAATDTTACACCTCGGTCGGGGICAGACTGCTGCCTICGTCTGGAGTGGGCAICAGGGTCTTGGGGGGAATAGCGGGGG 1.000000 45 CGCGGCACGGGCTTACGTCTATATAGCTGDAAGTGCTITAATITAGGCCGAATDTTACACCTCGGTCGGGADCAGACTGCTGCCTIGGTCTAGAGTCGGCADCAGCGCATATCGCAAAGTAGCAGGGT 1.000000 46 CGCGGCACGGGCTTACGTCTATATAGCTGDAAGTGCTITAGCDTAGACCGAGCDCAATGTTCCAACCGGGGICTTAAAGCTTCCTIGGTTTAGAGTCGGCADCAGCGCATAGCACAAAATAGCGGGGG 1.000000 47 CGCGGCACGGGCTTACGTCTATATAGCTGDAAGTGCTITAGCDTGTACAGGATDTTACACCTTGGTCGGGGICTTAAAGCTTCCTIGGTTTAGAGTCGGCAICAGCGCCCTGGGGGGAATAGTGGGGG 1.000000 48 CGCGGCACGGGCTCGGGCGCACATCCCTGDAAGTGCTITAACITGGACAGGATDTTACACCTTGGTCGGGGICTTAAAGTTGGCCIGGTCCGAAATCAGCADAAGCGCATTGGGGGGGATAGTGGGGG 1.000000 49 CGCGGCACGGGCCCGGGTCTATATCCCTGIAACGTTCDTAGCDTGTACCGAGCDCAATGTTCCAACCGGGADCAGACTGCTGCCTIGGTCTAGAGTCGGTADCGGCGCCCTGGGGGGAATAGTGGGGG 1.000000 50 CGCGGCACGGGCCCGGGTCTATATCCCTGIAACGTTCDTAGCDTGTACCGAGCDCAATGTTCCAACCGGAGIAAGGAAGCTGCCTDGACCCGGAGTCGGCADCAGCACCCAGGGGGGGATAGTGGGGG 1.000000 51 CGCGGCACGGGCCCGGGTCTATATCCCTGIAACGTTCDTAGCDTGTACCGAGCDCAATGTTCCAGCCATGGIAAGGAAGCTGCCTDGACCCGGAGTCGGCADCAGCGCCCTGGGGGGAATAGTGGGGG 2.000000 52 CGCGGCACGGTCTTACGTCTATATAGCTGDAAGTGCTIAAACITAGACCGAGCDCAATGTTCCAGCCATGADCAGACTGCTGCCTIGGTCTAGAGTCGGCADCAGGGTCTTGGGGGGAATAGCGGGGG 1.000000 53 CGCGGCACGGTCTCGGGTCTATATCCCTGDAACGTTCDTAGCDTGTACCGAGCDCAATGTTCCAGCCATGGIAAGGAAGCTGCTTDGACCCGAAATCAGTADCGGGGTCTTGGGGGGAATAGCGGGGG 1.000000 54 CGCGGCACGGTCTCGGGTCTATATCCCTGDAACGTTCDTAGCDTGTACCGAGCDCAATGTTCCAGCCATGAICTGAAAATTGCCCIGGTCCGGAGTCGGCADCAGCGCCCTGGGGGGAATAGTGGGGG 1.000000 55 CGCGGCACGGTCTCGGGTCTATATCCCTGIAACGTTCDTAGCDTGTACCGAGCDCAATGTTCCAGCCATGGIAAGGAAGCTGCTTDGACCCGGAGTCGGCADCAGGGTCTTGGGGGGAATAGCGGAGG 1.000000 56 CGCGGCACGGTCTCGGGTCTATATCCCTGIAACGTTCDTAGCDTGTACCAAGCDCAATGTTCCAACCGGAGIAAGGAAGCTGCCTDGACCCGAAGTCGACGDCAGCGCATATCGCAAAGTAGCAGGGT 1.000000 57 CGCGGCGCGGGCTTACGTCTATATAGCTGDAAGTGCTITAGCDTGTACCGAATICAACACCCCGGTTGGGGICTTAAAGCCTCCTIGGTCCGGAGTCGGTADCGGCGCATATCGCAAAGTAGCAGGGT 1.000000 58 CGCGGCGCGGGCTTACGTCTATATAGCTGDAAGTGCTITAGCDTGTACCGAATICAACACCCCGGTTGGGGIAAGGAAGCTGCCTIGGTCCGGAGTCGGCADCAGGGTCTTGGGGGGAATAGCGGGGG 1.000000 59 CGCGGCGCGGGCTTACGTCTATATAGCTGDAAGTGCTITAGCDTGTACCGAATICAACACCCCGGTTGGGGDCAGACTGCTGCCTIGGTCTAAAATCAGCADCAGCGCCCTGGGGGGAATAGTGGGGG 1.000000 60 CGCGGCGCGGGCTTACGTCTATATAGCTGDAAGTGCTITAGCDTGTACCGAATICAACACCCCGGTTGGGGDCAGACTGCTGCCTIGGTCTAAAATCAGCAICAGGGTCTATCGCAAAGTAGCAGGGT 1.000000 61 CGCGGCGCGGGCTTACGTCTATATAGCTGDAAGTGCTITAGCDTGTACCGAGCDCAATGTTCCAACCGGGGIAAGGAAGCTGCTTDGACCCGGAGTCGGCADCAGGGTCTTGGGGGGAATAGCGGGGG 1.000000 62 CGCGGCGCGGGCTTACGTCTATATAGCTGDAAGTGCTITAGCDTGTACCGAGCDCAATGTTCCAACCGGGADCAGACTGCTGCCTIGGTCTAGAGTCGGTADCGGCGCCCTGGGGGGAATAGTGGGGG 1.000000 63 CGCGGCGCGGGCTTACGTCTATATAGCTGDAAGTGCTITAGCDTGTACCGAGCDCAATGTTCCAGCCATGGICTTAAAGCCTCCTIGGTCCGAAGTCGGCADCAGCGCATATCGCAAAGTAGCAGGGT 1.000000 64 CGCGGCGCGGGCTTACGTCTATATAGCTGDAAGTGCTITAGCDTGTACCGAGCDCAATGTTCCAGCCATGGIAAGGAAGCTGCCTDGACCCGGAGTCGGCADCAGGGTCTTGGGGGGAATAGCGGGGG 1.000000 65 CGCGGCGCGGGCTTACGTCTATATAGCTGDAAGTGCTITAGCDTGTACCAAGCDCAATGTTCCAGCCAGGGDCAGACTGCTGCCTIGGTCTAAAATCAGCADAAGGGTCTTGGGGGGAATAGCGGGGG 1.000000 66 CGCGGCGCGGGCTTACGTCTATATAGCTGDAAGTGCTITGACITAGACCGAGCDCAATGTTCCAACCGGGGICTTAAAGCCTCCTIGGTCCGGAGTCGGTADCGGCGCATATCGCAAAGTAGCAGGGT 1.000000 67 CGCGGCGCGGGCTTACGTCTATATAGCTGDAAGTGCTITGACITGGACCGAGCDCAATGTTCCAACCGGGGICTGAAAGCTGCCTIGGTCCGGAGTCGGCAICAGCGCCCTGGGGGGAGCGTCAAGAG 1.000000 68 CGCGGCGCGGGCTTACGTCTATATCCCTGIAACGTTCDTAGCDTGTACCGAGCDCAATGTTCCAACCGGAGIAAGGAAGCTGCCTDGACCCGGAGTCGACGDCAGCACCCTGGGGGGAATAGTGGGGG 1.000000 69 CGCGGCGCGGGCTTACGTCTATATCCCTGIAACGTTCDTAGCDTGTACCGAGCDCAATGTTCCAGCCATAGICTTAAAGCTTCCTIGGTCCGGAGTCGGCADCGGCGCCCTGGGGGGAGCGTCAAGAG 1.000000 70 CGCGGCGCGGGCTCGGGTCTATCTCCCTADAAGGTTCDTAATITAGGCCGAATICAACACCCCGGTTGGGGICTGAAAGCCGCCTIGGTCCGGAGCCGGCAICAGGGTCTTGGGGGGAATAGCGGGGG 1.000000 71 CGCGGCGCGGGCTCGGTCGCACATCGCTADGAGTGCTIAAACITAGACAGGACDTAGCACCCCGGTCGGAGICTTAAAGCTTCCTIGGTTTAAAGTCGGCADAAGCGCATATCGCAAAGTAGCAGGGT 1.000000 72 CGCGGCGCGGGCTCGGTCGCACATCCCCGDAGGTGCTITAGCDTGTACCGAATDTTACACCTCGGTCGGGAIAAGGAAGCTGCCTDGACCCGGAGTCGGCADCAGCGCATAGCACAAAATAGCGGGGG 1.000000 73 CGCGGCGCGGGCTCGGTCGCACATCCCCGDAGGTGCTITAGCDTGTACCGAATDTTACACCTCGGTCGGGAIAAGGAAGCTGCCTDGACCCGGAGTCGGCAICAGGGTCTTGGGGGGAATAGCGGAGG 1.000000 74 CGCGGCGCGGGCTCGGTCGCACATCCCCGDAGGTGCTITAGCDTGTACCGAATDTTACACCTCGGTCGTAGIAAGGAAGCTGCCTIGGCCCGGAGTCGGCAICAGGGTCTTGGGGGGAATAGCGGAGG 1.000000 75 CGCGGCGCGGGCTCGGTCGCACATCCCCGDAGGTGCTITAGCDTGTACCGAGCDCAATGTTCCAGCCATAGDCAGACTGCTGCCTIGGTCTAGAGTCGGCADCAGCACCCTGGGGGGGATAGTGGGGG 1.000000 76 CGCGGCGCGGGCTCGGTCGCACATCCCCGDAGGTGCTITAGCDTGTACCAAGCDCAATGTTCCAACCGGAGDCAGAAAGCTGCCTIGGTCCGGAGTCGGCAICAGGGTCTTGGGGGGGATAGTGGGGG 1.000000 77 CGCGGCGCGGGCTCGGTCGCACATCCCCGDAGGTGCTITAGCDTGTACAGGATDTTACACCTTGGTCGGGGICAGACTGCTGCCTICGTCTGGAGTGGGCAICAGGGTCTTGGGGGGAATAGCGGGGG 1.000000 78 CGCGGCGCGGGCTCGGTCGCACATCCCCGDAGGTGCTITAGCDTGTACAGGATDTTACACCTTGGTCGGAGIAAGGAAGCTGCCTDGACCCGAAATCAGCADCAGCGCCCTGGGGGGAATAGTGGGGG 1.000000 79 CGCGGCGCGGGCTCGGTCGCACATCCCCGDAGGTGCTITGACITAGACCGAGCDCAATGTTCCAGCCATGGIAAGGAAGCTGCTTDGACCCGGAGTCGGCADCAGCGCATATCGCAAAGTAGCAGGGT 1.000000 80 CGCGGCGCGGGCTCGGTCGCACATCCCCGDGAGTGCTITAGCDTGTACAGGATDTTACACCTTGGTCGGGGDCAGACTGCTGCCTIGGTCTAAAGTCGGCADCAGCGCATATCGCAAAGTAGCAGGGT 1.000000 81 CGCGGCGCGGGCTCGGTCGCGCCGCGCTADGAGTGCTITAGCDTGTACCGAATICAATGTTCCAACCGGGGICTTAAAGCTTCCTIGGTCCGGAGTGGGCADCAAGGTCTTGGGGGGAATAGCGGGGG 1.000000 82 CGCGGCGCGGGCTCGGTCGCGCCGCGCTADGAGTGCTITAGCDTGTACAGGATDTTACACCTTGGTCGGAGIAAGGAAGCTGCTTDGACCCGAAATCAGTADCGGGGTCTTGGGGGGAATAGCGGGGG 1.000000 83 CGCGGCGCGGGCTCGGTCGCGCCGCGCTADGAGTGCTIAAACITAGACAGGACDTAGCACCCCGGTCGGAGICTTAAAGCTTCCTIGGTTTAGAGTCGGCADCAGCACCCTGGGGGGGATAGTGGGGG 1.000000 84 CGCGGCGCGGTCTTACGTCTATATAGCTGDAAGTGCTITAGCDTGTACCGAATDTTACACCTCGGTCGGGGICTTAAAGCCTCCTIGGTCCGAAGTCGGCADCAGCGCATAGCACAAAATAGCGGGGG 1.000000 85 CGCGGCGCGGTCTCGGGTCTATATCCCTADGAGTGCTITAACITGGACAGGGCDCAATGTTCCAGCCGTGGICTGAAAATTGCCCIGGTCCGGAGTCGGCADCAGGGTCTTGGGGGGAATAGCGGGGG 1.000000 86 CGCGGCGCGCGCTTACGTCTATATAGCTGDAAGTGCTITAGCDTGTACCGAATICAACACCCCGGTTGGAGIAAGGAAGCTGCCTDGACCCGGAGTCGACGDCAGCGCATATCGCAAAGTAGCAGGGT 1.000000 87 CGCGGCGCGCGCTTACGTCTATATAGCTGDAAGTGCTITAGCDTGTACCGAATICAATGTTCCAACCGGGGICTTAAAGCCTCCTIGGTCCGAAGTCGGCADCAGCGCATATCGCAAAGTAGCAGGGT 1.000000 88 CGCGGCGCGCGCTTACGTCTATATAGCTGDAAGTGCTITAGCDTGTACCGAGCDCAATGTTCCAGCCATAGIAAGGAAGCTGCTTDGACCCGGAGTCGGCADCAAGGTCTTGGGGGGAATAGCGGGGG 1.000000 89 CGCGGCGTGGGCTTACGTCTATATCCCTGIAACGTTCDTAGCDTGTACCGAGCDCAATGTTCCAACCGGAGIAAGGAAGCTGCCTDGACCCGAAATCAGCADAAGCGCCCTGGGGGGAGCGTCAAGAG 1.000000 90 CGCGGAACGCGCTCGGGTCTATATCCCTGIAACGTTCDTAGCDTGTACCGAGCDCAATGTTCCAGCCATGADCAGACTGCTGCCTIGGTCTAGAGTCGGCADAAGCGCATAGCACAAAATAGCGGGGG 1.000000 91 CGTGGCGCGGGCTTACGTCTATATAGTTGDAAGTGCTITAACITAGACAGGACDCAACACCCCGGTCGGGGICAGAAAGCTGCCTIGGTCCGAAGTCGGCADAAGCGCCCTGGGGGGAATAGTGGGGG 1.000000 92 CGTGGCGCGGTCTCGGGTCTATATCCCTGIAAGTGCTITAACITAGACCGAACDTAACACCCCGGTCGGGGICTGAAAGCTGCCTIGGTCTGGAGCCGGTADCGAGGTCTTGGGGGGAATAGCGGGGG 1.000000 END LIST_SUMMARY Summary of best reconstruction (numbers refer to the list of haplotypes given above) BEGIN BESTPAIRS_SUMMARY D001: (8,44) D002: (34,41) D003: (12,32) D004: (33,58) D005: (77,91) D006: (48,70) D007: (28,29) D008: (35,67) D009: (43,92) D010: (4,42) D011: (3,81) D012: (9,17) D013: (5,40) D014: (10,87) D015: (30,1) D016: (6,2) D033: (89,85) D034: (19,20) D035: (16,27) D036: (45,76) D037: (25,46) D038: (18,69) D039: (17,88) D040: (11,26) E001: (51,62) E002: (47,90) E003: (38,52) E004: (15,75) E005: (74,84) E006: (22,86) E007: (66,83) E008: (13,63) E009: (56,71) E010: (49,53) E011: (31,80) E012: (37,60) E013: (23,54) E014: (57,78) E015: (7,72) E016: (51,65) E017: (36,82) E018: (55,64) E019: (39,59) E020: (24,61) E021: (50,73) E022: (68,14) E023: (21,79) END BESTPAIRS_SUMMARY Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in []: BEGIN BESTPAIRS1 0 D001 (A) (C) (T) G G C A C (A) G (T) C T T A C G T C T A T A T A G C T G D A A G T G C T I T A A C I T A G A C C G A A T I C A A C A C C C C A A C C G G G G I C (T) G A [A] (A) (A) (T) T G C C (C) I (G) G T C (C) G G A G T (C) G G C A (D) C A G G G T C T T G G G G G G A A T A G C G G G G G (C) (G) (C) G G C A C (G) G (G) C T T A C G T C T A T A T A G C T G D A A G T G C T I T A A T I T A G G C C G A A T D T T A C A C C T C G G T C G G G G I C (A) G A [C] (T) (G) (C) T G C C (T) I (C) G T C (T) G G A G T (G) G G C A (I) C A G G G T C T T G G G G G G A A T A G C G G G G G 0 D002 C C T G G C A T G G G C T C G G T C G C G C C G C G C T A D G A G T G C T I T A A C I C A G A C C G A G C D C A A T G T T C C A G C C A T A G I (A) (A) G (G) A A G C T G C C T (D) G (A) (C) C C G (A) A (A) T C (A) G C A (D) (A) A G C (G) C (A) (T) (A) G (C) G (C) (A) (A) (A) A T A G (C) G G G G G C C T G G C G C G G T C T T A C G T C T A T A T A G C T G D A A G T G C T I T A A C I T A G A C C G A A C D T A G C A C C C C G G T C G G G G I (C) (T) G (A) A A G C T G C C T (I) G (G) (T) C C G (G) A (G) T C (G) G C A (I) (C) A G C (A) C (C) (C) (T) G (G) G (G) (G) (G) (G) A T A G (T) G G G G G 0 D003 (A) C T G G C A (C) G (C) (T) C T C G G G C G C A C (A) (T) C C (C) (C) G D A (A) G (G) G C (T) I T A (G) C (D) T (A) G (G) C A G G A T D T T A C A C C T T G G T C G G A G D C A G A C T G C T G C C T I G G T C C G G A G T C G G C A D (A) A G (C) G (C) (A) T (A) G (C) G (C) (A) (A) A (G) T A G C (A) G G G (T) (C) C T G G C A (T) G (G) (G) C T C G G G C G C A C (C) (G) C C (T) (T) G D A (G) G (T) G C (C) I T A (A) C (I) T (G) G (A) C C G A A C D T A G C A C C C C G G T C G G G G I C T G A A A G C C G C C T I G G T C C G A G G T C G G C A D (C) A G (G) G (T) (C) T (T) G (G) G (G) (G) (G) A (A) T A G C (G) G G G (G) 0 D004 C (C) (T) G G C A T G G G C T C G G T C G C G C C G C G C T A D G A G T G C T I T A (A) C (I) (C) (A) (G) A C C G A G C D C A A T G T T C C A G C C A T A G I A A G G A A G C T G C C T D G A C C C G G A G T C G G C A D C A G C A C C C T G G G G G G [G] A T A G T G G G G G C (G) (C) G G C G C G G G C T T A C G T C T A T A T A G C T G D A A G T G C T I T A (G) C (D) (T) (G) (T) A C C G A A T I C A A C A C C C C G G T T G G G G I A A G G A A G C T G C C T I G G T C C G G A G T C G G C A D C A G G G T C T T G G G G G G A A T A G C G G G G G 0 D005 C G (C) G G C G C G G G C T (C) (G) (G) (T) (C) (G) (C) A (C) A T (C) (C) (C) (C) G D A (G) G T G C T I T A (G) C (D) T (G) (T) A C A G G A T D T T A C A C C T T G G T C G G G G I C A G A C T G C T G C C T I C G T C T G G A G T G G G C A I C A G G G T C T T G G G G G G A A T A G C G G G G G C G (T) G G C G C G G G C T (T) (A) (C) (G) (T) (C) (T) A (T) A T (A) (G) (T) (T) G D A (A) G T G C T I T A (A) C (I) T (A) (G) A C A G G A C D C A A C A C C C C G G T C G G G G I C A G A A A G C T G C C T I G G T C C G A A G T C G G C A D A A G C G C C C T G G G G G G A A T A G T G G G G G 0 D006 C G C G G C (A) C G G G C T C G G G C G C A C A T C C C T G D A A G T G C T I T A A C I T [G] G A C A G G A T D T T A C A C C T T G G T C G G G G I C T T A A A G T T G G C C I G G T C C G A A A T C A G C A D A A G C G C A T T G G G G G G G A T A G T G G G G G C G C G G C (G) C G G G C T C G G G T C T A T C T C C C T A D A A G G T T C D T A A T I T A G G C C G A A T I C A A C A C C C C G G T T G G G G I C T G A A A G C C G C C T I G G T C C G G A G C C G G C A I C A G G G T C T T G G G G G G A A T A G C G G G G G 0 D007 C C T G G C A C G G G C T T A C G T C T A T A T A G C T G D A A G T G C T I T A A C I T G G A C A G A A C D C A A C A C C C C G G T C G G G G I C A G A A A G C T G C C T I G G T C C G G A G T C G G [T] A D C G G C G C A T A T C G C A A A G T A G C A G G G T C C T G G C A C G G G C T T A C G T C T A T A T A G C T G D A A G T G C T I T A A T I T A G G C C G A A T D T T A C A C C T C G G T C G G G G I C A G A C T G C T G C C T I C G T C T G A G G T G G G C A D C A G G G T C T T G G G G G G A A T A G C G G G G G 0 D008 C (C) (T) G G C G C G G G C T T A C G T C T A T A T A G C T G D A A G T G C T I T (A) (G) C (D) T G (T) A C C G A A T D T T A C A C C C C G G T C G G G A I A A G G A A G C T G C C T D G A C C C G G A G T C G G C A (D) C A G C (A) C C C T G G G G G G (G) (A) (T) (A) (G) (T) (G) (G) G (G) G C (G) (C) G G C G C G G G C T T A C G T C T A T A T A G C T G D A A G T G C T I T (G) (A) C (I) T G (G) A C C G A G C D C A A T G T T C C A A C C G G G G I C T G A A A G C T G C C T I G G T C C G G A G T C G G C A (I) C A G C (G) C C C T G G G G G G (A) (G) (C) (G) (T) (C) (A) (A) G (A) G 0 D009 C G C G G C A C G G G C T T A C G T C T A T A T A G C T G D A A G T G C T I T A A C I C A G A C C G A A T D T T A C A C C T C G G C C G G G G I C T G A A A G C C G C C T I G G T C C G A A A T C A G C A I C A G G G T C T T G G G G G G G A T A G T G G G G G C G T G G C G C G G T C T C G G G T C T A T A T C C C T G I A A G T G C T I T A A C I T [A] G A C C G A A C D T A A C A C C C C G G T C G G G G I C [T] G A A A G C [T] G C C T I G G T C T G G A G C C G G T A D C G A G G T C T T G G G G G G A A T A G C G G G G G 0 D010 A C C C G C G C G G G C T C G G G T C T A T A T C C C T G I A A C G T T C D T A A T I T A G G C C G A A T I C A A C A C C C C G G T T G G G (G) I A A G (G) A A G C T G C C T I G G T C C G G A G T C G G C A (D) C A G G G T C T T G G G G G G (A) A T A G (C) G G G G G C C T G G C G C G G T C T T A C G T C T A T A T A G C T G D A A G T G C T I T A A C I T A G A C C G A A C D T A G C A C C C C G G T C G G G (A) I A A G (A) A A G C T G C C T I G G T C C G A A A T C A G C A (I) C A G G G T C T T G G G G G G (G) A T A G (T) G G G G G 0 D011 (A) (C) C G G C G C G G G C T (T) (A) (C) (G) (T) (C) (T) (A) (T) (A) (T) (A) G C T (G) D (A) A G T G C T I T A (A) C (I) T G (G) A C (A) G A [G] [C] (D) C A A T G T T C C A (G) C C G (T) G G I C T (G) A A A G C T (G) C C T I G G T C C G (A) (G) G T G G G C A D C A (G) G G T C T T G G G G G G A A T A G C G G G G G (C) (G) C G G C G C G G G C T (C) (G) (G) (T) (C) (G) (C) (G) (C) (C) (G) (C) G C T (A) D (G) A G T G C T I T A (G) C (D) T G (T) A C (C) G A [A] [T] (I) C A A T G T T C C A (A) C C G (G) G G I C T (T) A A A G C T (T) C C T I G G T C C G (G) (A) G T G G G C A D C A (A) G G T C T T G G G G G G A A T A G C G G G G G 0 D012 A C T G (G) C A C A G T C T T A C G T C T A T A T A G C T G D A A G T G C T I T A A C I C A G A C C G A G C D C A A T G T T C C A G C C G G G G I A A G G A A G C T G C C T I G G T C C G A A A T C A G C A I C A G C G C C C T G G G G G G A G C G T C A A G A G A C T G (A) C G C G G T C T T A C G T C T A T A T A G C T G I A A C G T T C D T A A C I C A G A C C G A A T I C A A C A C C C C G G T T G G G G I C T G A A A G C C T C C T I G G T C C G G A G C C G G T A D C G G C G C C C T G G G G G G A G C G T C A A G A G 0 D013 (A) C (C) (C) G C G C G G G C T C G G G T C T A T C G C C T T G D A G G T G C C I T A A C I T G G A C C G A G C D C A A T G T T C C A A C C G G A G I C T G A A A A T T G G C T I G G T C C G G A G T C G G C A D C A G C G C C C T G G G G G G A G C G T C A A G A G (C) C (T) (G) G C G C G G G C T C G G G T C T A T C T C C C T G D A A G G T T C D T G A T I T A G G G C G A A T D T T A C A C C T C G G C C G G G G I C T G A A A G C C G C C T I G G T C C G G A G T G G G C A I C A G G G T C T T G G G G G G A A T A G C G G G G G 0 D014 (A) (C) (T) G G C (A) C (A) (G) (T) C T T A C G T C T A T A T (C) (C) C T G (I) A A (C) (G) (T) (T) (C) (D) T A A C I T A G A C C G A A T I C A A C A C C C C G G T T G G G G I C T G A A A A T T G G C C I G G T C C G A A A T C A G C A (I) C A G C (A) C (C) (C) (T) (G) (G) G (G) (G) (G) (G) (A) T A G (T) (G) G G G (G) (C) (G) (C) G G C (G) C (G) (C) (G) C T T A C G T C T A T A T (A) (G) C T G (D) A A (G) (T) (G) (C) (T) (I) T A G C D T G T A C C G A A T I C A A T G T T C C A A C C G G G G I C T T A A A G C C T C C T I G G T C C G A A G T C G G C A (D) C A G C (G) C (A) (T) (A) (T) (C) G (C) (A) (A) (A) (G) T A G (C) (A) G G G (T) 0 D015 (C) C (T) G G C A (C) G G (T) C T C G G T C G C (G) C (C) (G) C (G) C T (A) D A (G) G T G C T I T A A C I T A G A C C G A A T I C A A C A C C C C G G T T G G G G I C T G A A A A T T G G C C I G G T C C G A A A T C A G C A [I] C A G C G C C C T G G G G G G A (A) (T) (A) (G) (T) (G) (G) G (G) G (A) C (C) G G C A (T) G G (G) C T C G G T C G C (A) C (A) (T) C (C) C T (G) D A (A) G T G C T I T A A C I T A G A C C G A G C D C A A T G T T C C A A C C G G A G I C T G A A A G C T G C C T I G G T C C G G A G C C G G C A [D] C A G C G C C C T G G G G G G A (G) (C) (G) (T) (C) (A) (A) G (A) G 0 D016 A C C (C) G C G C (G) G (G) C T (C) (G) (G) (T) T C T A T A T C C C T G I A A C G T T C D (T) A A C I T A G A C C G A G C D C A A T G T T C C A A C C G G [A] (G) I C T (G) A A A G C (T) (G) C C T I G G T C C G G A G (C) C G (G) (T) (A) D C (G) (A) (G) G (T) C (T) T G G G G G G A (A) (T) (A) (G) C (G) (G) G (G) G A C C (G) G C G C (A) G (T) C T (T) (A) (C) (G) T C T A T A T A G C T G D A A G T G C T I (A) A A C I T A G A C C G A G C D C A A T G T T C C A A C C G G G (A) I C T (T) A A A G C (C) (T) C C T I G G T C C G G A G (T) C G (A) (C) (G) D C (A) (G) (C) G (C) C (C) T G G G G G G A (G) (C) (G) (T) C (A) (A) G (A) G 0 D033 C G C G G C G (T) G G (G) C T (T) (A) (C) G T C T A T A T C C C T (G) (I) (A) A (C) (G) (T) (T) (C) (D) T A (G) C (D) T G (T) A C (C) G (A) G C D C A A T G T T C C A (A) C C G (G) (A) G I (A) (A) G (G) A A [G] (C) T G C C (T) (D) G (A) (C) C C G (A) A (A) T C (A) G C A D (A) A G (C) G (C) C (C) T G G G G G G A (G) (C) (G) (T) C (A) (A) G (A) G C G C G G C G (C) G G (T) C T (C) (G) (G) G T C T A T A T C C C T (A) (D) (G) A (G) (T) (G) (C) (T) (I) T A (A) C (I) T G (G) A C (A) G (G) G C D C A A T G T T C C A (G) C C G (T) (G) G I (C) (T) G (A) A A A (T) T G C C (C) (I) G (G) (T) C C G (G) A (G) T C (G) G C A D (C) A G (G) G (T) C (T) T G G G G G G A (A) (T) (A) (G) C (G) (G) G (G) G 0 D034 A C T G A A A C G G G A T T A C G T C T A T A T A G C T G D A A G T G C T (I) T A A C I T G G A C A G G A T D T T A C A C C T T G G T C G G G G I C T T A A A G T T G G C C I G G T C C G A A A T C A G C A D A A G C G C A T A G C A C A A A A T A G C G G G G G A C T G A A A C G G G A T T A C G T C T A T A T A G C T G D A A [G] [G] [T] [T] [C] (D) T A A C I [C] A G A C C G A A T I C A A C A C C C C G G T T G G G G I C T T A A A G C T T C C T I G G T C C G G A G T C G G C A D C G G C G C C C T G G G G G G A G C G T C A A G A G 0 D035 (A) C (T) G (A) C (G) C G G G C T T A C G T C T A T A T A G C T G D A A G T G C T I T G A T I T A G G G C G A G C D C A A T G T T C C A A C C G G G G I C T G A A A A T T G C C T I G G T C C G G A G T C G G C A D C A G G G T C T A G C G C A A A A T A G C G G G G G (C) C (C) G (G) C (A) C G G G C T T A C G T C T A T A T A G C T G D A A G T G C T I T A A C I C A G A C C G A A T D T T A C A C C T C G G C C G G G G I C T G A A A G C C G C C T I G G T C C G A A A T C A G C A D C A G C G C C C T G G G G G G A A T A G T G G G G G 0 D036 C G C G G C (A) C G G G C T (T) (A) (C) (G) (T) (C) (T) A (T) A T (A) (G) C (T) G D A (A) G T G C T I T A (A) (T) (I) T (A) (G) [G] C C (G) A (A) (T) D (T) (T) A (C) (A) (C) (C) (T) C (G) (G) (T) C G G (G) (A) D C A G A (C) (T) G C T G C C T I G G T C (T) (A) G A G T C G G C A (D) C A G (C) G (C) (A) T (A) (T) (C) G (C) (A) (A) (A) (G) T A G (C) (A) G G G (T) C G C G G C (G) C G G G C T (C) (G) (G) (T) (C) (G) (C) A (C) A T (C) (C) C (C) G D A (G) G T G C T I T A (G) (C) (D) T (G) (T) A C C (A) A (G) (C) D (C) (A) A (T) (G) (T) (T) (C) C (A) (A) (C) C G G (A) (G) D C A G A (A) (A) G C T G C C T I G G T C (C) (G) G A G T C G G C A (I) C A G (G) G (T) (C) T (T) (G) (G) G (G) (G) (G) (G) (A) T A G (T) (G) G G G (G) 0 D037 (A) (C) (T) G (A) (A) (G) C G G G C T C G G G T C T A T A T C C C T G I A A C G T T C D A A A C I T G T A C C G A A T D T T A C A C C C C G G T C G G G A I A A G G A A G C T G C C T D G A C C C G G A G T C G G C A [D] C A G C A C C C T G G G G G G G A T A G T G G G G G (C) (G) (C) G (G) (C) (A) C G G G C T T A C G T C T A T A T A G C T G D A A G T G C T I T A G C D T A G A C C G A G C D C A A T G T T C C A A C C G G G G I C T T A A A G C T T C C T I G G T [T] [T] [A] G A G T C G G C A [D] C A G C G C A T A G C A C A A A A T A G C G G G G G 0 D038 (A) (C) (T) G [A] (A) (A) C G G G (A) T T A C G T C T A T A T (A) (G) C T G (D) A A (G) (T) (G) (C) (T) (I) T A (A) C (I) T (A) (G) A C C G A A T D T T A C A C C T T G G T C G G (G) G I C T T A A A G C T T C C T I G G T (T) (T) (A) G A G T C G G C A (I) C (A) G C G C C C T G G G G G G A (A) (T) (A) (G) (T) (G) (G) G (G) G (C) (G) (C) G [G] (C) (G) C G G G (C) T T A C G T C T A T A T (C) (C) C T G (I) A A (C) (G) (T) (T) (C) (D) T A (G) C (D) T (G) (T) A C C G A G C D C A A T G T T C C A G C C A T (A) G I C T T A A A G C T T C C T I G G T (C) (C) (G) G A G T C G G C A (D) C (G) G C G C C C T G G G G G G A (G) (C) (G) (T) (C) (A) (A) G (A) G 0 D039 A C T G A C G C G G T C T T A C G T C T A T A T A G C T G I A A C G T T C D T A A C I C A G A C C G A A T I C A A C A C C C C G G T T G G G G I C T G A A A G C C T C C T I G G T C C G G A G C C G G T A D C G G C G C C C T G G G G G G A G C G T C A A G A G C G C G G C G C G C G C T T A C G T C T A T A T A G C T G D A A G T G C T I T A G C D T G T A C C G A G C D C A A T G T T C C A G C C A T A G I A A G G A A G C T G C T T D G A C C C G G A G T C G G C A D C A A G G T C T T G G G G G G A A T A G C G G G G G 0 D040 A C T G (G) (C) (A) C (A) G (T) C T (T) (A) (C) G C G C G C C G A G C T G D A A G T G C T I T G A T I T A G G G C G A A C D T A G C A C C C C G G T C G G G G I C T T A A A G C T G C C T I G G T C C G [A] A G T C G G C A D A A G C G C C C T G G G G G G A A T A G T G G G G G A C T G (A) (A) (G) C (G) G (G) C T (C) (G) (G) T T C T A T A T C G C T A D G A G T G C T I T A A C I T G G A C C G A A C D T A G C A C C C C G G T C G G G G I C T G A A A G C C G C C T I G G T C C G A G G T C G G C A D C A G C G C C C T G G G G G G A A T A G T G G G G G 0 E001 C G C G G C (A) C G G G C (C) (C) (G) (G) G T C T A T A T (C) (C) C T G (I) A A (C) (G) (T) (T) (C) (D) T A G C D T G T A C C G A G C D C A A T G T T C C A G C C A T G (G) (I) (A) A G (G) (A) (A) G C T G C C T (D) G (A) (C) C (C) (G) G A G T C G G (C) A D C (A) G C G C C C T G G G G G G A A T A G T G G G G G C G C G G C (G) C G G G C (T) (T) (A) (C) G T C T A T A T (A) (G) C T G (D) A A (G) (T) (G) (C) (T) (I) T A G C D T G T A C C G A G C D C A A T G T T C C A A C C G G G (A) (D) (C) A G (A) (C) (T) G C T G C C T (I) G (G) (T) C (T) (A) G A G T C G G (T) A D C (G) G C G C C C T G G G G G G A A T A G T G G G G G 0 E002 C G C G G (C) A C G (G) G C T (T) (A) (C) G T C T A T A T (A) (G) C T G (D) A A (G) (T) (G) (C) (T) (I) T A G C D T G T A C A G G A T D T T A C A C C T T G G T C G G G G (I) C (T) (T) A (A) (A) G C T (T) C C T I G G T (T) T A G A G T C G G C A (I) (C) A G C G C (C) (C) (T) G (G) (G) (G) (G) (G) A A T A G (T) G G G G G C G C G G (A) A C G (C) G C T (C) (G) (G) G T C T A T A T (C) (C) C T G (I) A A (C) (G) (T) (T) (C) (D) T A G C D T G T A C C G A G C D C A A T G T T C C A G C C A T G A (D) C (A) (G) A (C) (T) G C T (G) C C T I G G T (C) T A G A G T C G G C A (D) (A) A G C G C (A) (T) (A) G (C) (A) (C) (A) (A) A A T A G (C) G G G G G 0 E003 C (C) (T) G G C (G) C G G G C T (C) (G) (G) G T C T A T A T A G C T G D A A G T G C T I T A G C D T G T A C C G A G C D C A A T G T T C C A G C C A G A G I C T T A A A G C C T C C T I G G T C C G A A G T C G A C G D C A G (C) (A) (C) C (C) (A) G G G G G G (G) A T A G (T) G G G G G C (G) (C) G G C (A) C G G T C T (T) (A) (C) G T C T A T A T A G C T G D A A G T G C T I A A A C I T A G A C C G A G C D C A A T G T T C C A G C C A T G A D C A G A C T G C T G C C T I G G T C T A G A G T C G G C A D C A G (G) (G) (T) C (T) (T) G G G G G G (A) A T A G (C) G G G G G 0 E004 (A) (C) (T) G G (A) G C G G G C T C G G G T C T A T A T C C C T G I A A C G T T C D T A G C D T G T A C C G A G C D C A A T G T T C C A G C C A T A G (I) C (T) G A (A) (A) G C T G C C T I G G (C) C (C) (G) G A G T C G G C A (I) C A G C A C C C T G G G G G G (A) A T A G T G G G G G (C) (G) (C) G G (C) G C G G G C T C G G T C G C A C A T C C C C G D A G G T G C T I T A G C D T G T A C C G A G C D C A A T G T T C C A G C C A T A G (D) C (A) G A (C) (T) G C T G C C T I G G (T) C (T) (A) G A G T C G G C A (D) C A G C A C C C T G G G G G G (G) A T A G T G G G G G 0 E005 C G C G G C G C G G (G) C T (C) (G) (G) (T) (C) (G) (C) A (C) A T (C) (C) C (C) G D A (G) G T G C T I T A G C D T G T A C C G A A T D T T A C A C C T C G G T C G (T) (A) G I (A) (A) (G) (G) A A G C (T) (G) C C T I G G (C) C C G (G) A G T C G G C A (I) C A G (G) G (T) (C) T (T) G (G) (G) (G) (G) (G) A A T A G C G G (A) G G C G C G G C G C G G (T) C T (T) (A) (C) (G) (T) (C) (T) A (T) A T (A) (G) C (T) G D A (A) G T G C T I T A G C D T G T A C C G A A T D T T A C A C C T C G G T C G (G) (G) G I (C) (T) (T) (A) A A G C (C) (T) C C T I G G (T) C C G (A) A G T C G G C A (D) C A G (C) G (C) (A) T (A) G (C) (A) (C) (A) (A) A A T A G C G G (G) G G 0 E006 (A) (C) (T) G (A) (A) (A) C G (G) (T) C T (C) (G) (G) G T C T A T A T (C) (C) C T G (I) A A (C) (G) (T) (T) (C) [D] T A G C D T G T A C C G A (G) (C) (D) C A A (T) (G) (T) (T) C C (A) G (C) (C) (A) (T) A G I (C) (T) (T) (A) A A G C T (T) C C T (I) G (G) (T) (T) (T) (A) G A G T C G (G) (T) (A) D C (G) G C (A) C (C) (C) (T) (G) (G) G (G) (G) (G) (G) (A) T A G (T) (G) G G G (G) (C) (G) (C) G (G) (C) (G) C G (C) (G) C T (T) (A) (C) G T C T A T A T (A) (G) C T G (D) A A (G) (T) (G) (C) (T) I T A G C D T G T A C C G A (A) (T) (I) C A A (C) (A) (C) (C) C C (G) G (T) (T) (G) (G) A G I (A) (A) (G) (G) A A G C T (G) C C T (D) G (A) (C) (C) (C) (G) G A G T C G (A) (C) (G) D C (A) G C (G) C (A) (T) (A) (T) (C) G (C) (A) (A) (A) (G) T A G (C) (A) G G G (T) 0 E007 C G C G G C G C G G G C T (T) (A) (C) (G) (T) (C) (T) (A) (T) (A) (T) (A) G C T (G) D (A) A G T G C T I (T) (G) A C I T A G A C (C) G (A) (G) C D (C) A (A) (T) (G) (T) (T) C C (A) (A) (C) C G G (G) G I C T T A A A G C (C) T C C T I G G T (C) (C) (G) G A G T C G G (T) A D C (G) G C (G) C (A) (T) (A) (T) (C) G (C) (A) (A) (A) (G) T A G (C) (A) G G G (T) C G C G G C G C G G G C T (C) (G) (G) (T) (C) (G) (C) (G) (C) (C) (G) (C) G C T (A) D (G) A G T G C T I (A) (A) A C I T A G A C (A) G (G) (A) C D (T) A (G) (C) (A) (C) (C) C C (G) (G) (T) C G G (A) G I C T T A A A G C (T) T C C T I G G T (T) (T) (A) G A G T C G G (C) A D C (A) G C (A) C (C) (C) (T) (G) (G) G (G) (G) (G) (G) (A) T A G (T) (G) G G G (G) 0 E008 (A) (C) (T) G G C G C G G G C T T A C G T C T A T A T A G C T G D A A G T G C T I T A G C D T G T A C C G A G C D C A A T G T T C C A (A) C C (G) (G) (A) G I (A) (A) (G) (G) A A G C (T) (G) C C T (D) G (A) (C) C C G (G) A G T C G (A) C (G) D C A G C A C C C T G G G G G G A A T A G T G G G G G (C) (G) (C) G G C G C G G G C T T A C G T C T A T A T A G C T G D A A G T G C T I T A G C D T G T A C C G A G C D C A A T G T T C C A (G) C C (A) (T) (G) G I (C) (T) (T) (A) A A G C (C) (T) C C T (I) G (G) (T) C C G (A) A G T C G (G) C (A) D C A G C G C A T A T C G C A A A G T A G C A G G G T 0 E009 C G C G G C (A) C G G (T) C T C G G (G) (T) (C) (T) A (T) A T C (C) C T (G) (I) (A) A (C) (G) (T) (T) (C) (D) T A G C D T G T A C C A A G C D C A A T G T T C C A A C C G G A G I (A) (A) (G) (G) A A G C T (G) C C T (D) G (A) (C) (C) (C) (G) A A G T C G (A) C (G) D (C) A G C G C A T A T C G C A A A G T A G C A G G G T C G C G G C (G) C G G (G) C T C G G (T) (C) (G) (C) A (C) A T C (G) C T (A) (D) (G) A (G) (T) (G) (C) (T) (I) A A A C I T A G A C A G G A C D T A G C A C C C C G G T C G G A G I (C) (T) (T) (A) A A G C T (T) C C T (I) G (G) (T) (T) (T) (A) A A G T C G (G) C (A) D (A) A G C G C A T A T C G C A A A G T A G C A G G G T 0 E010 C G C G G C A C G G (G) C (C) C G G G T C T A T A T C C C T G (I) A A C G T T C D T A G C D T G T A C C G A G C D C A A T G T T C C A (A) C C (G) (G) G (A) D C A G A C T G C T G C C T I G G T C T A G A G T C G G T A D C G G C G C C C T G G G G G G A A T A G T G G G G G C G C G G C A C G G (T) C (T) C G G G T C T A T A T C C C T G (D) A A C G T T C D T A G C D T G T A C C G A G C D C A A T G T T C C A (G) C C (A) (T) G (G) I A A G G A A G C T G C T T D G A C C C G A A A T C A G T A D C G G G G T C T T G G G G G G A A T A G C G G G G G 0 E011 C (C) (T) G G C A C G G T C T C G G T C G C G C C G C G C T A D A G G T G C T I T A G C D T G T A C C G A G C D C A A T G T T C C A G C C A T A G D C A G A C T G C T G C C T I G G T C T A G A G T C G G T A D C A G G G T C T T G G G G G G A A T A G C G G G G G C (G) (C) G G C G C G G G C T C G G T C G C A C A T C C C C G D G A G T G C T I T A G C D T G T A C A G G A T D T T A C A C C T T G G T C G G G G D C A G A C T G C T G C C T I G G T C T A A A G T C G G C A D C A G C G C A T A T C G C A A A G T A G C A G G G T 0 E012 C (C) (T) G G C G C G G G C T (C) (G) (G) G T C T A T A T A G C T G D A A G T G C T I T A G C D T G T A C C G A G C D C A A T G T T C C A G C C A G A G I C T T A A A G C C T C C T I G G T C C G A A G T C G A C G D C A G G G T C T (T) (G) (G) G (G) (G) (G) A (A) T A G (T) (G) G G G (G) C (G) (C) G G C G C G G G C T (T) (A) (C) G T C T A T A T A G C T G D A A G T G C T I T A G C D T G T A C C G A A T I C A A C A C C C C G G T T G G G G D C A G A C T G C T G C C T I G G T C T A A A A T C A G C A I C A G G G T C T (A) (T) (C) G (C) (A) (A) A (G) T A G (C) (A) G G G (T) 0 E013 (A) (C) (T) G (A) (A) (G) C G G (G) C T C G G G T C T A T A T C C C T G (I) A A C G T T C D T A G C D T G T A C C G A G C D C A A T G T T C C A G C C A T (A) (G) I C T T A A A G C T T C C T I G G T T T A G A G T C G G T A D C G G C (A) C C C T G G G G G G [G] A T A G T G G G G G (C) (G) (C) G (G) (C) (A) C G G (T) C T C G G G T C T A T A T C C C T G (D) A A C G T T C D T A G C D T G T A C C G A G C D C A A T G T T C C A G C C A T (G) (A) I C T G A A A A T T G C C C I G G T C C G G A G T C G G C A D C A G C (G) C C C T G G G G G G [A] A T A G T G G G G G 0 E014 C G C G G C G C G G G C T (T) (A) (C) (G) (T) (C) (T) A (T) A T (A) (G) C (T) G D A (A) G T G C T I T A G C D T G T A C (C) G (A) A T (I) (C) (A) A C A C C (C) (C) G G T (T) G G (G) G I (C) (T) (T) (A) A A G C (C) (T) C C T (I) G (G) (T) C C G (G) A (G) T C (G) G (T) A D C (G) G C G C (A) (T) [A] (T) (C) G (C) (A) (A) A (G) T A G (C) (A) G G G (T) C G C G G C G C G G G C T (C) (G) (G) (T) (C) (G) (C) A (C) A T (C) (C) C (C) G D A (G) G T G C T I T A G C D T G T A C (A) G (G) A T (D) (T) (T) A C A C C (T) (T) G G T (C) G G (A) G I (A) (A) (G) (G) A A G C (T) (G) C C T (D) G (A) (C) C C G (A) A (A) T C (A) G (C) A D C (A) G C G C (C) (C) T (G) (G) G (G) (G) (G) A (A) T A G (T) (G) G G G (G) 0 E015 A C T G G C A C A G G C (C) C G G G C G C A C C G C C C T A D A A G G G T C D T A G C D T G T A C C G A G C D C A A T G T T C C A A C C G G A G I A A G G A A G C T G C T T D G A C C C G G A G T C G G C A D C A G G G T C T T G G G G G G A A T A G C G G G G G C G C G G C G C G G G C (T) C G G T C G C A C A T C C C C G D A G G T G C T I T A G C D T G T A C C G A A T D T T A C A C C T C G G T C G G G A I A A G G A A G C T G C C T D G A C C C G G A G T C G G C A [D] C A G C G C A T A G C A C A A A A T A G C G G G G G 0 E016 C G C G G C A C G G G C C C G G G T C T A T A T C C C T G I A A C G T T C D T A G C D T G T A C C G A G C D C A A T G T T C C A G C C A T G G I A A G G A A G C T G C C T D G A C C C G G A G T C G G C A D C A G (C) G (C) C (C) T G G G G G G A A T A G (T) G G G G G C G C G G C [G] C G G G C T T A C G T C T A T A T A G C T G D A A G T G C T I T A G C D T G T A C C A A G C D C A A T G T T C C A G C C A G G G D C A G A C T G C T G C C T I G G T C T A A A A T C A G C A D A A G (G) G (T) C (T) T G G G G G G A A T A G (C) G G G G G 0 E017 C (C) (T) G G C G C G G G C T (T) (A) (C) G (T) (C) (T) (A) (T) (A) (T) (A) G C T (G) D (A) A G T G C T I T A G C D T G T A C (C) G (A) A T D T T A C A C C [C] (C) G G T C G G (G) (A) I A A G G A A G C T G C (C) T D G A C C C G (G) A (G) T C (G) G T A D C G G (C) (A) (C) C (C) T G G G G G G (G) A T A G [T] G G G G G C (G) (C) G G C G C G G G C T (C) (G) (G) [T] (C) (G) (C) (G) (C) (C) (G) (C) G C T (A) D (G) A G T G C T I T A G C D T G T A C (A) G (G) A T D T T A C A C C T (T) G G T C G G (A) (G) I A A G G A A G C T G C (T) T D G A C C C G (A) A (A) T C (A) G T A D C G G (G) (G) (T) C (T) T G G G G G G (A) A T A G C G G G G G 0 E018 C G C G G C (A) C G G [T] C T C G G G T C T A T A T C C C T G I A A C G T T C D T A G C D T G T A C C G A G C D C A A T G T T C C A G C C A T G G I A A G G A A G C T G C (T) T D G A C C C G G A G T C G G C A D C A G G G T C T T G G G G G G A A T A G C G G (A) G G C G C G G C (G) C G G G C T T A C G T C T A T A T A G C T G D A A G T G C T I T A G C D T G T A C C G A G C D C A A T G T T C C A G C C A T G G I A A G G A A G C T G C (C) T D G A C C C G G A G T C G G C A [D] C A G G G T C T T G G G G G G A A T A G C G G (G) G G 0 E019 C (C) (T) G G C G C G G G C T (C) (G) (G) G T C T A T A T (C) (C) C T G D A A G (G) (T) (T) (C) (D) T A G C D T G T A C (A) G (G) A T (D) (T) (T) A C A C C (T) (T) G G T (C) G G (A) G (I) C (T) G A (A) (A) (A) (T) T G C C (C) I G G T C (C) (G) (G) A (G) T C (G) G C A D C A G C (A) C C C T G G G G G G (G) A T A G T G G G G G C (G) (C) G G C G C G G G C T (T) (A) (C) G T C T A T A T (A) (G) C T G D A A G (T) (G) (C) (T) (I) T A G C D T G T A C (C) G (A) A T (I) (C) (A) A C A C C (C) (C) G G T (T) G G (G) G (D) C (A) G A (C) (T) (G) (C) T G C C (T) I G G T C (T) (A) (A) A (A) T C (A) G C A D C A G C (G) C C C T G G G G G G (A) A T A G T G G G G G 0 E020 A C T G A A G C G G G C T C G G G T C T A T A T C C C T G I A A C G T T C D T A G C D T G T A C C (A) A G C D C A A T G T T C C A A C C G G (A) G I A A G G A A G C T G C T T D G A C C C G G A G T C G (A) C (G) D C A G (C) (A) (C) C (C) T G G G G G G A A T A G (T) G G G G G C G C G G C G C G G G C T T A C G T C T A T A T A G C T G D A A G T G C T I T A G C D T G T A C C (G) A G C D C A A T G T T C C A A C C G G (G) G I A A G G A A G C T G C T T D G A C C C G G A G T C G (G) C (A) D C A G (G) (G) (T) C (T) T G G G G G G A A T A G (C) G G G G G 0 E021 C G C G G C (A) C G G G C (C) C G G G T C T A T A T C C C T G I A A C G T T C D T A G C D T G T A C C G A G C D C A A T G T T C C A A C C G G A G I A A G G A A G C T G C C T D G A C C C G G A G T C G G C A (D) C A G (C) (A) (C) C (C) (A) G G G G G G (G) A T A G (T) G G (G) G G C G C G G C (G) C G G G C (T) C G G T C G C A C A T C C C C G D A G G T G C T I T A G C D T G T A C C G A A T D T T A C A C C T C G G T C G G G A I A A G G A A G C T G C C T D G A C C C G G A G T C G G C A (I) C A G (G) (G) (T) C (T) (T) G G G G G G (A) A T A G (C) G G (A) G G 0 E022 (C) (G) (C) G G C G C G G G C T (T) (A) (C) G T C T A T A T C C C T G (I) A A C G T T C D T A G C D T G T A C (C) G (A) (G) (C) D (C) (A) A (T) (G) (T) (T) (C) (C) (A) (A) (C) C G G (A) G I A A G G A A G C T G C C T D G A C C C G G A G T C G (A) (C) (G) D C (A) G C (A) C (C) (C) T G (G) (G) (G) (G) (G) A A T A G T G G G G G (A) (C) (T) G G C G C G G G C T (C) (G) (G) G T C T A T A T C C C T G (D) A A C G T T C D T A G C D T G T A C (A) G (G) (A) (T) D (T) (T) A (C) (A) (C) (C) (T) (T) (G) (G) (T) C G G (G) G I C T T A A A G C T T C C T I G G T T T A G A G T C G (G) (T) (A) D C (G) G C (G) C (A) (T) [A] G (C) (A) (C) (A) (A) A A T A G T G G G G G 0 E023 (A) (C) (T) G (A) (A) (A) C G G (T) C T C G G (G) (T) (C) (T) A (T) A T C C C (T) G (I) A (A) (C) (G) (T) (T) (C) (D) T (A) (G) C (D) T (G) (T) A C C G A G C D C A A T G T T C C A G C C A T G (A) I A A G G A A G C T G C (C) T D G A C C C G G A G T C G G (T) A D C (G) G C (A) C (C) (C) (T) (G) (G) G (G) (G) (G) (G) (A) T A G (T) (G) G G G (G) (C) (G) (C) G (G) (C) (G) C G G (G) C T C G G (T) (C) (G) (C) A (C) A T C C C (C) G (D) A (G) (G) (T) (G) (C) (T) (I) T (G) (A) C (I) T (A) (G) A C C G A G C D C A A T G T T C C A G C C A T G (G) I A A G G A A G C T G C (T) T D G A C C C G G A G T C G G (C) A D C (A) G C (G) C (A) (T) (A) (T) (C) G (C) (A) (A) (A) (G) T A G (C) (A) G G G (T) END BESTPAIRS1 Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in [] with phase known positions indicated by = BEGIN BESTPAIRS2 0 D001 (A) (C) (T) = = = = = (A) = (T) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = = A = = = = = = I C A = ? ? ? = C = A A C = = = = = = = (T) = = ? (A) (A) (T) = = ? = (C) = (G) = = = (C) = = = = = (C) = ? ? ? (D) = = = = = = = = = = = = = = = = = = = = = = = = = = (C) (G) (C) = = = = = (G) = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = = = G = = = = = = D T T = ? ? ? = T = G G T = = = = = = = (A) = = ? (T) (G) (C) = = ? = (T) = (C) = = = (T) = = = = = (G) = ? ? ? (I) = = = = = = = = = = = = = = = = = = = = = = = = = = 0 D002 = = = = = = A T = = G = = C G G T C G C G C C G C = = = A = G = = = = = = = = = = = = C = = = = = = = G = = C = A ? G T T = = A = C = A T A = = (A) (A) = (G) = = = = = = = = = (D) = (A) (C) = = = (A) = (A) = = (A) = = = (D) (A) = = = (G) = (A) (T) (A) = (C) = (C) (A) (A) (A) = = = = (C) = = = = = = = = = = = G C = = T = = T A C G T C T A T A T A = = = G = A = = = = = = = = = = = = T = = = = = = = A = = T = G ? A C C = = G = T = G G G = = (C) (T) = (A) = = = = = = = = = (I) = (G) (T) = = = (G) = (G) = = (G) = = = (I) (C) = = = (A) = (C) (C) (T) = (G) = (G) (G) (G) (G) = = = = (T) = = = = = 0 D003 (A) = = = = = = (C) = (C) (T) = = = = = = = = = = = (A) (T) = = (C) (C) = = = (A) = (G) = = (T) = = = (G) = (D) = (A) = (G) = A = G = T ? = T A = = = = T T = = = = = = A = D = A = = C T = = T = = = = = = = = = = = G A = = = = = = = = (A) = = (C) = (C) (A) = (A) = (C) = (C) (A) (A) = (G) = = = = (A) = = = (T) (C) = = = = = = (T) = (G) (G) = = = = = = = = = = = (C) (G) = = (T) (T) = = = (G) = (T) = = (C) = = = (A) = (I) = (G) = (A) = C = A = C ? = A G = = = = C C = = = = = = G = I = T = = A A = = C = = = = = = = = = = = A G = = = = = = = = (C) = = (G) = (T) (C) = (T) = (G) = (G) (G) (G) = (A) = = = = (G) = = = (G) 0 D004 = (C) (T) = = = A T = = = = = C G G T C G C G C C G C = = = A = G = = = = = = = = = (A) = (I) (C) (A) (G) = = = = = G C D = = = T G T T = = A = C C A T A = = = = = = = = = = = = = = = D = A C = = = = = = = = = = = = = = = ? C A C = C ? ? ? ? ? ? ? ? = = = = T = = = = = = (G) (C) = = = G C = = = = = T A C G T C T A T A T A = = = G = A = = = = = = = = = (G) = (D) (T) (G) (T) = = = = = A T I = = = C A C C = = G = T T G G G = = = = = = = = = = = = = = = I = G T = = = = = = = = = = = = = = = ? G G T = T ? ? ? ? ? ? ? ? = = = = C = = = = = 0 D005 = = (C) = = = = = = = = = = (C) (G) (G) (T) (C) (G) (C) = (C) = = (C) (C) (C) (C) = = = (G) = = = = = = = = (G) = (D) = (G) (T) = = = = = = T = T T = = = = = T T = = = = = = = = = = = = = C T = = = = = = = = C = = = T = G = = = G = = = = I C = = G = T = T = = = = = = = = = = = = C = = = = = = = (T) = = = = = = = = = = (T) (A) (C) (G) (T) (C) (T) = (T) = = (A) (G) (T) (T) = = = (A) = = = = = = = = (A) = (I) = (A) (G) = = = = = = C = C A = = = = = C C = = = = = = = = = = = = = A A = = = = = = = = G = = = C = A = = = C = = = = D A = = C = C = C = = = = = = = = = = = = T = = = = = 0 D006 ? = = = = = (A) = = = = = = = = = = C G C = C A = = = = = G = = = = T G C T I = = = C = ? ? = A = A = G ? ? D T T = = = = = T T = = = C = = = = = = ? T = = = = T T = G = C = = = = = = ? A = A T = A = = = D A = = C = C A = = = = = = = = G = = = = T = = = = = ? = = = = = (G) = = = = = = = = = = T C T = T C = = = = = A = = = = G T T C D = = = T = ? ? = G = C = A ? ? I C A = = = = = C C = = = T = = = = = = ? G = = = = C C = C = T = = = = = = ? G = G C = G = = = I C = = G = T C = = = = = = = = A = = = = C = = = = = 0 D007 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = G = A = A = = = C = C A = = = = = C = = = = = = = = = = = = = = A A = = = = = = = = G = = = C = G A = = C = ? ? = = = G = C = C A = A T C = C A A = G = = = = A = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = A = G = C = = = T = T T = = = = = T = = = = = = = = = = = = = = C T = = = = = = = = C = = = T = A G = = G = ? ? = = = A = G = T C = T G G = G G G = A = = = = G = = = G 0 D008 = (C) (T) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (A) (G) = (D) = = (T) = = = = = A T = T T = C A C C = = G G T = = = = A = A A = G = = = = = = = = = D = A C = = = = = = = = = = = = (D) = = = = (A) = = = = = = = = = = (G) (A) (T) (A) (G) (T) (G) (G) = (G) = = (G) (C) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (G) (A) = (I) = = (G) = = = = = G C = C A = T G T T = = A A C = = = = G = C T = A = = = = = = = = = I = G T = = = = = = = = = = = = (I) = = = = (G) = = = = = = = = = = (A) (G) (C) (G) (T) (C) (A) (A) = (A) = 0 D009 = = C = = = A = = = G = = T A C = = = = = = = = A G = = = D = = = = = = = = = = = = = ? ? = = = = = = = T = = T = = = = = T ? = = C = = = = = = = ? = ? ? = = ? ? = = = = = = = = = C = A = A T = A = C = I = A G = = = = = = = = = = = = G = = = ? ? = = = = = = = T = = = G = = = T = = C G G = = = = = = = = C C = = = I = = = = = = = = = = = = = ? ? = = = = = = = C = = A = = = = = C ? = = T = = = = = = = ? = ? ? = = ? ? = = = = = = = = = T = G = G C = G = T = D = G A = = = = = = = = = = = = A = = = ? ? = = = = = 0 D010 A = C C = = = = = = G = = C G G = = = = = = = = C C = = = I = = C G T T C D = = = T = = = = G = = = = = T ? ? ? A ? = ? = = = = = = T = = = (G) = = = = (G) = = = = = = = = = = = = = = = = G = G = = G ? ? ? (D) = = = = = = = = = = = = = = = (A) = = = = (C) = = = = = C = T G = = = = = = T = = T A C = = = = = = = = A G = = = D = = G T G C T I = = = C = = = = A = = = = = C ? ? ? G ? = ? = = = = = = C = = = (A) = = = = (A) = = = = = = = = = = = = = = = = A = A = = A ? ? ? (I) = = = = = = = = = = = = = = = (G) = = = = (T) = = = = = 0 D011 (A) (C) = = = = = = = = = = = (T) (A) (C) (G) (T) (C) (T) (A) (T) (A) (T) (A) = = = (G) = (A) = = = = = = = = = (A) = (I) = = (G) = = (A) = = ? ? (D) = = = = = = = = ? = (G) = = = (T) = = = = = (G) = = = = = = (G) = = = = = = = = = = (A) (G) = = = = = = = = = = (G) = = = = = = = = = = = = = = = = = = = = = = = (C) (G) = = = = = = = = = = = (C) (G) (G) (T) (C) (G) (C) (G) (C) (C) (G) (C) = = = (A) = (G) = = = = = = = = = (G) = (D) = = (T) = = (C) = = ? ? (I) = = = = = = = = ? = (A) = = = (G) = = = = = (T) = = = = = = (T) = = = = = = = = = = (G) (A) = = = = = = = = = = (A) = = = = = = = = = = = = = = = = = = = = = = = 0 D012 = = ? = (G) = A = A = = = = = = = ? = = = = = = = = = = = = D = = G T G C T I = = = = = = = = = = = = = ? ? D = = = T G T T = = A = C C = = = = = A A = G = = = = ? G = = = = = = = = = = A = A T = A = C = I = A = = = = = = = = = = = = = = = = = = = = = = = = = = ? = (A) = G = G = = = = = = = ? = = = = = = = = = = = = I = = C G T T C D = = = = = = = = = = = = = ? ? I = = = C A C C = = G = T T = = = = = C T = A = = = = ? T = = = = = = = = = = G = G C = G = T = D = G = = = = = = = = = = = = = = = = = = = = = = = = 0 D013 (A) = (C) (C) = = = = = = = = = = = = = = = = = = = G = = T = = = = G = T G C = I = A = C = = G = A C = = = G C = C A = T G T T C = A A = = = = A = ? ? ? = = = = A T T = G = = = = = = = = = = = = = C = = = = D = = = C = C = C = = = = = = = = G C G T = A A = A = (C) = (T) (G) = = = = = = = = = = = = = = = = = = = T = = C = = = = A = G T T = D = G = T = = A = G G = = = A T = T T = C A C C T = G G = = = = G = ? ? ? = = = = G C C = C = = = = = = = = = = = = = G = = = = I = = = G = T = T = = = = = = = = A T A G = G G = G = 0 D014 (A) (C) (T) = = = (A) = (A) (G) (T) = = = = = = = = = = = = = (C) (C) = = = (I) = = (C) (G) (T) (T) (C) (D) = = A = I = A G = = = = = = = = = = = C A C C = = G G T T = = = = = = = G = ? = A T T G G = C = = = = = = = = = A = = A = = = (I) = = = = (A) = (C) (C) (T) (G) (G) = (G) (G) (G) (G) (A) = = = (T) (G) = = = (G) (C) (G) (C) = = = (G) = (G) (C) (G) = = = = = = = = = = = = = (A) (G) = = = (D) = = (G) (T) (G) (C) (T) (I) = = G = D = G T = = = = = = = = = = = T G T T = = A A C C = = = = = = = T = ? = G C C T C = T = = = = = = = = = G = = G = = = (D) = = = = (G) = (A) (T) (A) (T) (C) = (C) (A) (A) (A) (G) = = = (C) (A) = = = (T) 0 D015 (C) = (T) = = = = (C) = = (T) = = = = = = = ? = (G) = (C) (G) = (G) = = (A) = = (G) = = = = = = = = = = = = = = = = = = = A T I = = = C A C C = = G G T T = = G = = = = = = = = A T = = G = C = = = = = = ? A = A T = A = = = ? = = = = = = = = = = = = = = = = (A) (T) (A) (G) (T) (G) (G) = (G) = (A) = (C) = = = = (T) = = (G) = = = = = = = ? = (A) = (A) (T) = (C) = = (G) = = (A) = = = = = = = = = = = = = = = = = = = G C D = = = T G T T = = A A C C = = A = = = = = = = = G C = = C = T = = = = = = ? G = G C = G = = = ? = = = = = = = = = = = = = = = = (G) (C) (G) (T) (C) (A) (A) = (A) = 0 D016 = = = (C) = = = = (G) = (G) = = (C) (G) (G) (T) = = = = = = = C C = = = I = = C G T T C D (T) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? (G) = = = (G) = = = = = (T) (G) = = = = = = = = = = = = = (C) = = (G) (T) (A) = = (G) (A) (G) = (T) = (T) = = = = = = = = (A) (T) (A) (G) = (G) (G) = (G) = = = = (G) = = = = (A) = (T) = = (T) (A) (C) (G) = = = = = = = A G = = = D = = G T G C T I (A) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? (A) = = = (T) = = = = = (C) (T) = = = = = = = = = = = = = (T) = = (A) (C) (G) = = (A) (G) (C) = (C) = (C) = = = = = = = = (G) (C) (G) (T) = (A) (A) = (A) = 0 D033 = = = = = = = (T) = = (G) = = (T) (A) (C) = = = = = = = = = = = = (G) (I) (A) = (C) (G) (T) (T) (C) (D) = = (G) = (D) ? = (T) = = (C) = (A) = = = = = = = = = = = = = (A) = = = (G) (A) = = (A) (A) = (G) ? ? ? (C) = = = = (T) (D) = (A) (C) = = = (A) = (A) = = (A) = = = = (A) = = (C) = (C) = (C) = = = = = = = = (G) (C) (G) (T) = (A) (A) = (A) = = = = = = = = (C) = = (T) = = (C) (G) (G) = = = = = = = = = = = = (A) (D) (G) = (G) (T) (G) (C) (T) (I) = = (A) = (I) ? = (G) = = (A) = (G) = = = = = = = = = = = = = (G) = = = (T) (G) = = (C) (T) = (A) ? ? ? (T) = = = = (C) (I) = (G) (T) = = = (G) = (G) = = (G) = = = = (C) = = (G) = (T) = (T) = = = = = = = = (A) (T) (A) (G) = (G) (G) = (G) = 0 D034 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? ? ? (I) = = = = = ? G = = ? A = G = = ? T T = = = = = T T = = = C = = = = = = = = = = = = T = G G = C = = = = = = = A = A = = A = = = = A A = = = = A ? ? = C A C A A = A T A ? ? ? G = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? ? ? (D) = = = = = ? A = = ? C = A = = ? C A = = = = = C C = = = T = = = = = = = = = = = = C = T C = T = = = = = = = G = G = = G = = = = C G = = = = C ? ? = G G G G G = G C G ? ? ? A = A = 0 D035 (A) = (T) = (A) = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? T = T = = G G = = ? G C = C A = T G T T C = A A = = = = = = = = = = = = = A T T = = = = = = = = = = = G = G = = G ? ? ? = = = = G = T = T A = C = C A A = = = = = C = = = = = (C) = (C) = (G) = (A) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? C = C = = A C = = ? A T = T T = C A C C T = G G = = = = = = = = = = = = = G C C = = = = = = = = = = = A = A = = A ? ? ? = = = = C = C = C T = G = G G G = = = = = T = = = = = 0 D036 = = = = ? = (A) = = = = = = (T) (A) (C) (G) (T) (C) (T) = (T) = = (A) (G) = (T) = = = (A) = = = = = = = = (A) (T) (I) = (A) (G) ? ? = (G) = (A) (T) = (T) (T) = (C) (A) (C) (C) (T) = (G) (G) (T) = = = (G) (A) = = = = = (C) (T) = = = = = = = = = = = = (T) (A) = = = = = = = = = (D) = = = (C) = (C) (A) = (A) (T) (C) = (C) (A) (A) (A) (G) = = = (C) (A) = = = (T) = = = = ? = (G) = = = = = = (C) (G) (G) (T) (C) (G) (C) = (C) = = (C) (C) = (C) = = = (G) = = = = = = = = (G) (C) (D) = (G) (T) ? ? = (A) = (G) (C) = (C) (A) = (T) (G) (T) (T) (C) = (A) (A) (C) = = = (A) (G) = = = = = (A) (A) = = = = = = = = = = = = (C) (G) = = = = = = = = = (I) = = = (G) = (T) (C) = (T) (G) (G) = (G) (G) (G) (G) (A) = = = (T) (G) = = = (G) 0 D037 (A) (C) (T) = (A) (A) (G) = = = = = = C G G = = = = = = = = C C = = = I = = C G T T C D A = A = I = G T = = = = = A T = T T = C A C C = = G G T = = = = A = A A G ? = = = = = G = = = D = A C ? ? ? = = = = = = = = = ? ? ? = = A = C C T = G G G G G G = = = = T = = = = = (C) (G) (C) = (G) (C) (A) = = = = = = T A C = = = = = = = = A G = = = D = = G T G C T I T = G = D = A G = = = = = G C = C A = T G T T = = A A C = = = = G = C T T ? = = = = = T = = = I = G T ? ? ? = = = = = = = = = ? ? ? = = G = A T A = C A C A A A = = = = C = = = = = 0 D038 (A) (C) (T) = ? (A) (A) = = = = (A) = = = = ? = = = = = = = (A) (G) = = = (D) = = (G) (T) (G) (C) (T) (I) = = (A) = (I) = (A) (G) = = = = = A T = T T = C A C C T T G = T = G G (G) = = = = = = = = = = = = = = = = = = = (T) (T) (A) = = = = = = = = = (I) = (A) = = = = = = = = = = = = = = (A) (T) (A) (G) (T) (G) (G) = (G) = (C) (G) (C) = ? (C) (G) = = = = (C) = = = = ? = = = = = = = (C) (C) = = = (I) = = (C) (G) (T) (T) (C) (D) = = (G) = (D) = (G) (T) = = = = = G C = C A = T G T T C C A = C = A T (A) = = = = = = = = = = = = = = = = = = = (C) (C) (G) = = = = = = = = = (D) = (G) = = = = = = = = = = = = = = (G) (C) (G) (T) (C) (A) (A) = (A) = 0 D039 A C T = ? = = = = G T = = = = = = = = = = = = = = = = = = I = = C G T T C D = = A = I C A G = = = = = A T I = = = C A C C = = G = T T G G G = = C T = A = = = = C T = C = I = G T = = = = = = C = = = T = = = G G C = C = C = = = = = = = ? G C G T = A A = A = C G C = ? = = = = C G = = = = = = = = = = = = = = = = = = D = = G T G C T I = = G = D T G T = = = = = G C D = = = T G T T = = A = C C A T A = = A A = G = = = = T G = T = D = A C = = = = = = T = = = C = = = A A G = T = T = = = = = = = ? A T A G = G G = G = 0 D040 = = = = (G) (C) (A) = (A) = (T) = = (T) (A) (C) G C G C G C C G A = = = G = A = = = = = = = = G = T = = A = G G = = = = = = = = = = = = = = ? = = = = = = = = = = = T = = ? ? = T = = = = = = = = = = = ? A = = = = ? ? ? = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (A) (A) (G) = (G) = (G) = = (C) (G) (G) T T C T A T A T C = = = A = G = = = = = = = = A = C = = G = A C = = = = = = = = = = = = = = ? = = = = = = = = = = = G = = ? ? = C = = = = = = = = = = = ? G = = = = ? ? ? = C = = = = = = = = = = = = = = = = = = = = = = = = = 0 E001 = = = = = = (A) = = = = = (C) (C) (G) (G) = = = = = = = = (C) (C) = = = (I) = = (C) (G) (T) (T) (C) (D) = = = = = = = = = = = = = = = = = = = = = = = = = = G = = A T = (G) (I) (A) = = (G) (A) (A) = = = = = = = (D) = (A) (C) = (C) (G) = = = = = = = (C) = = = (A) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (G) = = = = = (T) (T) (A) (C) = = = = = = = = (A) (G) = = = (D) = = (G) (T) (G) (C) (T) (I) = = = = = = = = = = = = = = = = = = = = = = = = = = A = = G G = (A) (D) (C) = = (A) (C) (T) = = = = = = = (I) = (G) (T) = (T) (A) = = = = = = = (T) = = = (G) = = = = = = = = = = = = = = = = = = = = = = = = 0 E002 = = = = = (C) = = = (G) = = = (T) (A) (C) = = = = = = = = (A) (G) = = = (D) = = (G) (T) (G) (C) (T) (I) = = = = = = = = = = A = G A T = T T = C A C C T T G = T = G G = G (I) = (T) (T) = (A) (A) = = = (T) = = = = = = = (T) = = = = ? = = = = = = (I) (C) = = = = = (C) (C) (T) = (G) (G) (G) (G) (G) = = = = = (T) = = = = = = = = = = (A) = = = (C) = = = (C) (G) (G) = = = = = = = = (C) (C) = = = (I) = = (C) (G) (T) (T) (C) (D) = = = = = = = = = = C = A G C = C A = T G T T C C A = C = A T = A (D) = (A) (G) = (C) (T) = = = (G) = = = = = = = (C) = = = = ? = = = = = = (D) (A) = = = = = (A) (T) (A) = (C) (A) (C) (A) (A) = = = = = (C) = = = = = 0 E003 = (C) (T) = = = (G) = = = G = = (C) (G) (G) = = = = = = = = = = = = = = = = = = = = = = T = G = D = G T = = = = = = = = = = = = = = = = = = = = = = G A G I = T T ? A A = = C T = = = = = = = = C G A = = = = = A = G = = = ? (C) (A) (C) = (C) (A) = = = = = = (G) = = = = (T) = = = = = = (G) (C) = = = (A) = = = T = = (T) (A) (C) = = = = = = = = = = = = = = = = = = = = = = A = A = I = A G = = = = = = = = = = = = = = = = = = = = = = T G A D = A G ? C T = = T G = = = = = = = = T A G = = = = = G = A = = = ? (G) (G) (T) = (T) (T) = = = = = = (A) = = = = (C) = = = = = 0 E004 (A) (C) (T) = = (A) = = = = = = = = = = G T C T = T = = = = = T = I = A C G T T C D = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = (I) = (T) = = (A) (A) = = = = = = = = = = (C) = (C) (G) = = = = = = = = = (I) = = = = = = = ? = = = = = = = (A) = = = = = = = = = = (C) (G) (C) = = (C) = = = = = = = = = = T C G C = C = = = = = C = D = G G T G C T I = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = (D) = (A) = = (C) (T) = = = = = = = = = = (T) = (T) (A) = = = = = = = = = (D) = = = = = = = ? = = = = = = = (G) = = = = = = = = = = 0 E005 = = = = = = = = = = (G) = = (C) (G) (G) (T) (C) (G) (C) = (C) = = (C) (C) = (C) = = = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (T) (A) = = (A) (A) (G) (G) = = = = (T) (G) = = = = = = (C) = = = (G) = = = = = = = = (I) = = = (G) = (T) (C) = (T) = (G) (G) (G) (G) (G) = = = = = = = = (A) = = = = = = = = = = = = (T) = = (T) (A) (C) (G) (T) (C) (T) = (T) = = (A) (G) = (T) = = = (A) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (G) (G) = = (C) (T) (T) (A) = = = = (C) (T) = = = = = = (T) = = = (A) = = = = = = = = (D) = = = (C) = (C) (A) = (A) = (C) (A) (C) (A) (A) = = = = = = = = (G) = = 0 E006 (A) (C) (T) = (A) (A) (A) = = (G) (T) = = (C) (G) (G) = = = = = = = = (C) (C) = = = (I) = = (C) (G) (T) (T) (C) ? = = = = = = = = = = = = = (G) (C) (D) = = = (T) (G) (T) (T) = = (A) = (C) (C) (A) (T) = = = (C) (T) (T) (A) = = = = = (T) = = = (I) ? (G) (T) (T) (T) (A) = = = = = = (G) (T) (A) = = (G) = = (A) = (C) (C) (T) (G) (G) = (G) (G) (G) (G) (A) = = = (T) (G) = = = (G) (C) (G) (C) = (G) (C) (G) = = (C) (G) = = (T) (A) (C) = = = = = = = = (A) (G) = = = (D) = = (G) (T) (G) (C) (T) ? = = = = = = = = = = = = = (A) (T) (I) = = = (C) (A) (C) (C) = = (G) = (T) (T) (G) (G) = = = (A) (A) (G) (G) = = = = = (G) = = = (D) ? (A) (C) (C) (C) (G) = = = = = = (A) (C) (G) = = (A) = = (G) = (A) (T) (A) (T) (C) = (C) (A) (A) (A) (G) = = = (C) (A) = = = (T) 0 E007 = = = = = = = = = = = = = (T) (A) (C) (G) (T) (C) (T) (A) (T) (A) (T) (A) = = = (G) = (A) = = = = = = = (T) (G) = = = = = = = = (C) = (A) (G) = = (C) = (A) (T) (G) (T) (T) = = (A) (A) (C) = = = (G) = = = = = = = = = = (C) = = = = = = = = (C) (C) (G) = = = = = = = (T) = = = (G) = = (G) = (A) (T) (A) (T) (C) = (C) (A) (A) (A) (G) = = = (C) (A) = = = (T) = = = = = = = = = = = = = (C) (G) (G) (T) (C) (G) (C) (G) (C) (C) (G) (C) = = = (A) = (G) = = = = = = = (A) (A) = = = = = = = = (A) = (G) (A) = = (T) = (G) (C) (A) (C) (C) = = (G) (G) (T) = = = (A) = = = = = = = = = = (T) = = = = = = = = (T) (T) (A) = = = = = = = (C) = = = (A) = = (A) = (C) (C) (T) (G) (G) = (G) (G) (G) (G) (A) = = = (T) (G) = = = (G) 0 E008 (A) (C) (T) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (A) = = (G) (G) (A) = = (A) (A) (G) (G) = = = = (T) (G) = = = (D) = (A) (C) = = = (G) = = = = = (A) = (G) = = = = = A = C C T G G = G G G = A = = = T G = = = G (C) (G) (C) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (G) = = (A) (T) (G) = = (C) (T) (T) (A) = = = = (C) (T) = = = (I) = (G) (T) = = = (A) = = = = = (G) = (A) = = = = = G = A T A T C = C A A = G = = = C A = = = T 0 E009 ? = = = = = (A) = = = (T) = = = = = (G) (T) (C) (T) = (T) = = = (C) = = (G) (I) (A) = (C) (G) (T) (T) (C) (D) T = G = D = G T = = C A A G = = C = A T G T T = = A A C = = = = = = (A) (A) (G) (G) = = = = = (G) = = = (D) = (A) (C) (C) (C) (G) = = = = = = (A) = (G) = (C) = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = (G) = = = (G) = = = = = (T) (C) (G) (C) = (C) = = = (G) = = (A) (D) (G) = (G) (T) (G) (C) (T) (I) A = A = I = A G = = A G G A = = T = G C A C C = = G G T = = = = = = (C) (T) (T) (A) = = = = = (T) = = = (I) = (G) (T) (T) (T) (A) = = = = = = (G) = (A) = (A) = = = = = = = = = = = = = = = = = = = = = = = = = 0 E010 = = = = = = = = = = (G) = (C) = = = = = = = = = = = = = = = = (I) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (A) = = (G) (G) = (A) D C = = A C T = = ? = = C = I = G T = T A G = G = = G = = = = = = = C = C = C = = = = = = = = = = = = T = = = = = = = = = = = = = = = (T) = (T) = = = = = = = = = = = = = = = = (D) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (G) = = (A) (T) = (G) I A = = G A A = = ? = = T = D = A C = C G A = A = = A = = = = = = = G = T = T = = = = = = = = = = = = C = = = = = 0 E011 = (C) (T) = = = A = = = T = = = = = = = = = G = C G = G = T A = A G = = = = = = = = = = = = = = = = C = ? G C = C A = T G T T C C A = C = A T A = = = = = = = = = ? ? = = = = = = = = = = = G = = = = = = T = = = = = G = T C = ? G G = G G G = A = = = ? ? ? = = G = (G) (C) = = = G = = = G = = = = = = = = = A = A T = C = C G = G A = = = = = = = = = = = = = = = = A = ? A T = T T = C A C C T T G = T = G G G = = = = = = = = = ? ? = = = = = = = = = = = A = = = = = = C = = = = = C = C A = ? T C = C A A = G = = = ? ? ? = = T 0 E012 = (C) (T) = = = = = = = = = = (C) (G) (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G C D = = = T G T T = = A = C C A = A = I = T T = A A = = C T = = = = = = = = C G = = G = = G A = G D = = = = = ? ? ? (T) (G) (G) = (G) (G) (G) = (A) = = = (T) (G) = = = (G) = (G) (C) = = = = = = = = = = (T) (A) (C) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = A T I = = = C A C C = = G = T T G = G = D = A G = C T = = T G = = = = = = = = T A = = A = = A G = A I = = = = = ? ? ? (A) (T) (C) = (C) (A) (A) = (G) = = = (C) (A) = = = (T) 0 E013 (A) (C) (T) = (A) (A) (G) = = = (G) = = = = = = = = = = = = = = = = = = (I) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (A) (G) = = = T = = = G C = T = = T = = = = T T A = = = = = = = T = = = G = = (A) = = = = = = = = = = ? = = = = = = = = = = (C) (G) (C) = (G) (C) (A) = = = (T) = = = = = = = = = = = = = = = = = = (D) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (G) (A) = = = G = = = A T = G = = C = = = = C C G = = = = = = = C = = = A = = (G) = = = = = = = = = = ? = = = = = = = = = = 0 E014 = = = = = = = = = = = = = (T) (A) (C) (G) (T) (C) (T) = (T) = = (A) (G) = (T) = = = (A) = = = = = = = = = = = = = = = = (C) = (A) ? ? (I) (C) (A) = = = = = (C) (C) = = = (T) = = (G) = = (C) (T) (T) (A) = = = = (C) (T) = = = (I) = (G) (T) = = = (G) = (G) = = (G) = (T) = = = (G) = = = = (A) (T) ? (T) (C) = (C) (A) (A) = (G) = = = (C) (A) = = = (T) = = = = = = = = = = = = = (C) (G) (G) (T) (C) (G) (C) = (C) = = (C) (C) = (C) = = = (G) = = = = = = = = = = = = = = = = (A) = (G) ? ? (D) (T) (T) = = = = = (T) (T) = = = (C) = = (A) = = (A) (A) (G) (G) = = = = (T) (G) = = = (D) = (A) (C) = = = (A) = (A) = = (A) = (C) = = = (A) = = = = (C) (C) ? (G) (G) = (G) (G) (G) = (A) = = = (T) (G) = = = (G) 0 E015 ? C T = = = A = A = = = (C) = = = G = = = = = C G = = = T A = = A = G = T ? D ? ? ? = = = = = = = = = = G C = C A = T G T T C = A A C = = = A G = = = = ? = = = = = = = T = = = = = = = = = = = = = = = = = ? ? ? = G = T C = T = G G G G G = = = = = = = = = = = ? G C = = = G = G = = = (T) = = = T = = = = = A T = = = C G = = G = T = C ? I ? ? ? = = = = = = = = = = A T = T T = C A C C T = G G T = = = G A = = = = ? = = = = = = = C = = = = = = = = = = = = = = = = = ? ? ? = C = C A = A = C A C A A = = = = = = = = = = = 0 E016 = = = = = = ? ? ? = = = C C G G = = = = = = = = C C = = = I = = C G T T C D = = = = = = = = = = = G = = = = = = = = = = = = = = = = = = T = = I A = = G A A = = = = = = ? D = A C = C G G = G = = G ? ? ? = C = = (C) = (C) = (C) = = = = = = = = = = = = (T) = = = = = = = = = = = ? ? ? = = = T T A C = = = = = = = = A G = = = D = = G T G C T I = = = = = = = = = = = A = = = = = = = = = = = = = = = = = = G = = D C = = A C T = = = = = = ? I = G T = T A A = A = = A ? ? ? = A = = (G) = (T) = (T) = = = = = = = = = = = = (C) = = = = = 0 E017 = (C) (T) = = = = = = = ? ? = (T) (A) (C) ? (T) (C) (T) (A) (T) (A) (T) (A) = = = (G) = (A) = = = = = = = = = = = = = = = = = (C) = (A) = = = = = = ? ? ? ? ? (C) = = = = = = (G) (A) = = = = ? = = = = = = = (C) = = = = = = = = (G) = (G) = = (G) = = = ? = = = (C) (A) (C) = (C) = = = = = = = (G) = = = = ? ? ? = = = = (G) (C) = = = = = = = ? ? = (C) (G) (G) ? (C) (G) (C) (G) (C) (C) (G) (C) = = = (A) = (G) = = = = = = = = = = = = = = = = = (A) = (G) = = = = = = ? ? ? ? ? (T) = = = = = = (A) (G) = = = = ? = = = = = = = (T) = = = = = = = = (A) = (A) = = (A) = = = ? = = = (G) (G) (T) = (T) = = = = = = = (A) = = = = ? ? ? = = = 0 E018 = = = = = = (A) = = ? ? ? = C G G = = = = = = = = C C = = = I = = C G T T C ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (T) = = = = = ? ? = = = ? = = = = = = ? = = = = = = = = = = = = = = ? ? = = = ? ? ? = (A) = = = = = = = = (G) = = ? ? ? = T A C = = = = = = = = A G = = = D = = G T G C T ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (C) = = = = = ? ? = = = ? = = = = = = ? = = = = = = = = = = = = = = ? ? = = = ? ? ? = (G) = = 0 E019 = (C) (T) = = = = = = = = = = (C) (G) (G) ? = = = = = = = (C) (C) = = = = = = = (G) (T) (T) (C) (D) = = = = = = = = = = (A) = (G) = = (D) (T) (T) = = = = = (T) (T) = = = (C) = = (A) = (I) = (T) = = (A) (A) (A) (T) = = = = (C) = = = = = (C) (G) (G) = (G) = = (G) = = = = = = = = (A) = = = = = = = = = = (G) = = = = = = = = = = = (G) (C) = = = = = = = = = = (T) (A) (C) ? = = = = = = = (A) (G) = = = = = = = (T) (G) (C) (T) (I) = = = = = = = = = = (C) = (A) = = (I) (C) (A) = = = = = (C) (C) = = = (T) = = (G) = (D) = (A) = = (C) (T) (G) (C) = = = = (T) = = = = = (T) (A) (A) = (A) = = (A) = = = = = = = = (G) = = = = = = = = = = (A) = = = = = = = = = = 0 E020 A C T = A A = = = = = = = C G G = = = = = = = = C C = = = I = = C G T T C D = = = = = = = = = = = (A) = = = = = = = = = = = = = = = = = = = (A) = = = = = = = = = = = = = = = = = = = = = = = = = = = = (A) = (G) = = = ? (C) (A) (C) = (C) = = = = = = = = = = = = (T) = = = = = C G C = G C = = = = = = = T A C = = = = = = = = A G = = = D = = G T G C T I = = = = = = = = = = = (G) = = = = = = = = = = = = = = = = = = = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = = (G) = (A) = = = ? (G) (G) (T) = (T) = = = = = = = = = = = = (C) = = = = = 0 E021 = = = = = = (A) = = = = = (C) = = = G T C T = T = = = = = T = I = A C G T T C D = = = = = = = = = = = = = G C = C A = T G T T C = A A C = = ? A G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (D) = = = (C) (A) (C) = (C) (A) = = = = = = (G) = = = = (T) = = (G) = = = = = = = = (G) = = = = = (T) = = = T C G C = C = = = = = C = D = G G T G C T I = = = = = = = = = = = = = A T = T T = C A C C T = G G T = = ? G A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (I) = = = (G) (G) (T) = (T) (T) = = = = = = (A) = = = = (C) = = (A) = = 0 E022 (C) (G) (C) = = = = = = = = = = (T) (A) (C) = = = = = = = = = = = = = (I) = = = = = = = = = = = = = = = = = = (C) = (A) (G) (C) = (C) (A) = (T) (G) (T) (T) (C) (C) (A) (A) (C) = = = (A) = = A A G G = = = = = G = = = D = A C C C G = = = = = = (A) (C) (G) = = (A) = = (A) = (C) (C) ? = (G) (G) (G) (G) (G) = = = = = = = = = = = (A) (C) (T) = = = = = = = = = = (C) (G) (G) = = = = = = = = = = = = = (D) = = = = = = = = = = = = = = = = = = (A) = (G) (A) (T) = (T) (T) = (C) (A) (C) (C) (T) (T) (G) (G) (T) = = = (G) = = C T T A = = = = = T = = = I = G T T T A = = = = = = (G) (T) (A) = = (G) = = (G) = (A) (T) ? = (C) (A) (C) (A) (A) = = = = = = = = = = = 0 E023 (A) (C) (T) = (A) (A) (A) = = = (T) = = = = = (G) (T) (C) (T) = (T) = = = = = (T) = (I) = (A) (C) (G) (T) (T) (C) (D) = (A) (G) = (D) = (G) (T) = = = = = = = = = = = = = = = = = = = = = = = = (A) = = = = = = = = = = = = (C) = = = = = = = = = = = = = = = (T) = = = (G) = = (A) = (C) (C) (T) (G) (G) = (G) (G) (G) (G) (A) = = = (T) (G) = = = (G) (C) (G) (C) = (G) (C) (G) = = = (G) = = = = = (T) (C) (G) (C) = (C) = = = = = (C) = (D) = (G) (G) (T) (G) (C) (T) (I) = (G) (A) = (I) = (A) (G) = = = = = = = = = = = = = = = = = = = = = = = = (G) = = = = = = = = = = = = (T) = = = = = = = = = = = = = = = (C) = = = (A) = = (G) = (A) (T) (A) (T) (C) = (C) (A) (A) (A) (G) = = = (C) (A) = = = (T) END BESTPAIRS2 Phase probabilities at each site with phase known positions indicated by = and missing data positions indicated by ? BEGIN PHASEPROBS 0.89 0.89 0.89 = = = = = 0.89 = 0.89 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.94 = = = = 0.94 = = = = = = 0.94 0.94 0.94 = ? ? ? = 0.94 = 0.94 0.94 0.94 = = = = = = = 0.66 = = ? 0.66 0.66 0.66 = = ? = 0.66 = 0.66 = = = 0.66 = = = = = 0.66 = ? ? ? 0.66 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.99 0.99 = = 0.98 = = 0.99 0.99 0.99 0.99 0.99 0.99 0.99 0.99 0.99 0.99 0.99 0.99 = = = 0.99 = 0.99 = = = = = = = = = = = = 0.99 = = = = = = = 1.00 = = 1.00 = 1.00 ? 1.00 1.00 1.00 = = 1.00 = 1.00 = 1.00 1.00 0.94 = = 0.84 0.84 = 0.84 = = = = = = = = = 0.84 = 0.84 0.84 = = = 0.53 = 0.53 = = 0.53 = = = 0.60 0.60 = = = 0.58 = 0.58 0.58 0.58 = 0.58 = 0.58 0.58 0.58 0.58 = = = = 0.58 = = = = = 0.57 = = = = = = 0.56 = 0.61 0.57 = = = = = = = = = = = 0.81 0.81 = = 0.81 0.81 = = = 0.81 = 0.62 = = 0.81 = = = 0.88 = 0.88 = 0.88 = 0.88 = 0.96 = 0.96 = 0.96 ? = 0.96 0.96 = = = = 0.96 0.96 = = = = = = 0.96 = 0.96 = 0.96 = = 0.96 0.96 = = 0.96 = = = = = = = = = = = 0.96 0.96 = = = = = = = = 0.65 = = 0.65 = 0.65 0.65 = 0.65 = 0.65 = 0.65 0.65 0.65 = 0.65 = = = = 0.65 = = = 0.65 = 0.88 0.88 = = = 0.90 0.91 = = = = = 0.91 0.91 0.91 0.91 0.91 0.91 0.91 0.91 0.91 0.91 0.91 0.91 = = = 0.91 = 0.91 = = = = = = = = = 0.89 = 0.89 0.89 0.89 0.89 = = = = = 0.98 0.98 0.98 = = = 0.98 0.98 0.98 0.98 = = 0.98 = 0.98 0.98 0.98 0.98 0.98 = = = = = = = = = = = = = = = 0.98 = 0.98 0.98 = = = = = = = = = = = = = = = ? 0.98 0.98 0.98 = 0.98 ? ? ? ? ? ? ? ? = = = = 0.98 = = = = = = = 0.59 = = = = = = = = = = 0.60 0.60 0.60 0.60 0.60 0.60 0.60 = 0.60 = = 0.60 0.60 0.59 0.60 = = = 0.60 = = = = = = = = 0.65 = 0.65 = 0.65 0.65 = = = = = = 0.92 = 0.92 0.92 = = = = = 0.92 0.92 = = = = = = = = = = = = = 0.92 0.92 = = = = = = = = 0.92 = = = 0.92 = 0.92 = = = 0.92 = = = = 0.92 0.92 = = 0.92 = 0.92 = 0.92 = = = = = = = = = = = = 0.92 = = = = = ? = = = = = 0.57 = = = = = = = = = = 0.97 0.97 0.97 = 0.97 1.00 = = = = = 1.00 = = = = 1.00 1.00 1.00 1.00 1.00 = = = 1.00 = ? ? = 1.00 = 1.00 = 1.00 ? ? 1.00 1.00 1.00 = = = = = 1.00 1.00 = = = 1.00 = = = = = = ? 1.00 = = = = 1.00 1.00 = 1.00 = 1.00 = = = = = = ? 1.00 = 1.00 1.00 = 1.00 = = = 1.00 1.00 = = 1.00 = 1.00 1.00 = = = = = = = = 1.00 = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = 1.00 = 1.00 = 1.00 = = = 1.00 = 1.00 1.00 = = = = = 1.00 = = = = = = = = = = = = = = 1.00 1.00 = = = = = = = = 1.00 = = = 1.00 = 1.00 1.00 = = 1.00 = ? ? = = = 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 = 1.00 = = = = 1.00 = = = 1.00 = 0.57 0.57 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.67 0.64 = 0.64 = = 0.64 = = = = = 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 = = = = 1.00 = 0.98 0.98 = 0.98 = = = = = = = = = 0.98 = 0.98 0.98 = = = = = = = = = = = = 0.64 = = = = 0.63 = = = = = = = = = = 0.63 0.63 0.63 0.63 0.63 0.63 0.63 0.63 = 0.63 = = = 1.00 = = = 1.00 = = = 1.00 = = 1.00 1.00 1.00 = = = = = = = = 1.00 1.00 = = = 1.00 = = = = = = = = = = = = = ? ? = = = = = = = 1.00 = = 1.00 = = = = = 1.00 ? = = 1.00 = = = = = = = ? = ? ? = = ? ? = = = = = = = = = 1.00 = 1.00 = 1.00 1.00 = 1.00 = 1.00 = 1.00 = 1.00 1.00 = = = = = = = = = = = = 1.00 = = = ? ? = = = = = 0.93 = 0.93 0.93 = = = = = = 0.94 = = 0.96 0.96 0.96 = = = = = = = = 0.96 0.96 = = = 0.96 = = 0.96 0.96 0.96 0.96 0.96 0.96 = = = 0.98 = = = = 0.98 = = = = = 0.99 ? ? ? 0.99 ? = ? = = = = = = 0.99 = = = 0.68 = = = = 0.54 = = = = = = = = = = = = = = = = 0.99 = 0.99 = = 0.99 ? ? ? 0.85 = = = = = = = = = = = = = = = 0.85 = = = = 0.85 = = = = = 0.55 0.55 = = = = = = = = = = = 0.88 0.88 0.88 0.88 0.88 0.88 0.88 0.88 0.88 0.88 0.88 0.88 = = = 0.88 = 0.88 = = = = = = = = = 0.62 = 0.62 = = 0.62 = = 0.62 = = ? ? 0.62 = = = = = = = = ? = 0.62 = = = 0.62 = = = = = 0.60 = = = = = = 0.60 = = = = = = = = = = 0.63 0.63 = = = = = = = = = = 0.59 = = = = = = = = = = = = = = = = = = = = = = = = = ? = 0.89 = 0.92 = 0.92 = = = = = = = ? = = = = = = = = = = = = 0.92 = = 0.92 0.92 0.92 0.92 0.92 0.92 = = = = = = = = = = = = = ? ? 1.00 = = = 1.00 1.00 1.00 1.00 = = 1.00 = 1.00 1.00 = = = = = 0.98 0.98 = 0.98 = = = = ? 0.98 = = = = = = = = = = 0.98 = 0.98 0.98 = 0.98 = 0.98 = 0.98 = 0.98 = = = = = = = = = = = = = = = = = = = = = = = = 0.85 = 0.85 0.85 = = = = = = = = = = = = = = = = = = = 1.00 = = 1.00 = = = = 1.00 = 1.00 1.00 1.00 = 1.00 = 1.00 = 1.00 = = 1.00 = 1.00 1.00 = = = 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = = 1.00 = ? ? ? = = = = 1.00 1.00 1.00 = 1.00 = = = = = = = = = = = = = 1.00 = = = = 1.00 = = = 1.00 = 1.00 = 1.00 = = = = = = = = 1.00 1.00 1.00 1.00 = 1.00 1.00 = 1.00 = 0.63 0.63 0.63 = = = 0.63 = 0.64 0.64 0.64 = = = = = = = = = = = = = 0.56 0.56 = = = 0.56 = = 0.56 0.56 0.56 0.56 0.56 0.56 = = 0.93 = 0.93 = 0.93 0.93 = = = = = = = = = = = 0.93 0.93 0.93 0.93 = = 0.93 0.93 0.93 0.93 = = = = = = = 0.93 = ? = 0.93 0.93 0.93 0.93 0.93 = 0.93 = = = = = = = = = 0.93 = = 0.93 = = = 0.78 = = = = 0.79 = 0.79 0.79 0.79 0.79 0.79 = 0.79 0.79 0.79 0.79 0.79 = = = 0.79 0.79 = = = 0.79 0.51 = 0.52 = = = = 0.52 = = 0.52 = = = = = = = ? = 0.52 = 0.52 0.52 = 0.52 = = 0.52 = = 0.52 = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = = = 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 = = 1.00 = = = = = = = = 1.00 1.00 = = 1.00 = 1.00 = = = = = = ? 1.00 = 1.00 1.00 = 1.00 = = = ? = = = = = = = = = = = = = = = = 0.52 0.52 0.52 0.52 0.52 0.52 0.52 = 0.52 = = = = 0.63 = = = = 0.68 = 0.68 = = 0.78 0.78 0.78 0.55 = = = = = = = 0.94 0.94 = = = 0.94 = = 0.94 0.94 0.94 0.94 0.94 0.94 0.88 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? 0.87 = = = 0.77 = = = = = 0.87 0.87 = = = = = = = = = = = = = 0.63 = = 0.63 0.63 0.63 = = 0.63 0.54 0.54 = 0.54 = 0.54 = = = = = = = = 0.54 0.54 0.54 0.54 = 0.54 0.54 = 0.54 = = = = = = = = 0.51 = = 0.56 = = 0.50 0.50 0.50 = = = = = = = = = = = = 0.86 0.86 0.86 = 0.86 0.86 0.86 0.86 0.86 0.86 = = 0.86 = 0.86 ? = 0.86 = = 0.86 = 0.86 = = = = = = = = = = = = = 0.86 = = = 0.86 0.88 = = 0.88 0.88 = 0.88 ? ? ? 0.88 = = = = 0.88 0.88 = 0.88 0.88 = = = 0.71 = 0.71 = = 0.71 = = = = 0.71 = = 0.70 = 0.70 = 0.70 = = = = = = = = 0.70 0.70 0.70 0.70 = 0.70 0.70 = 0.70 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? ? ? 0.64 = = = = = ? 1.00 = = ? 1.00 = 1.00 = = ? 1.00 1.00 = = = = = 1.00 1.00 = = = 1.00 = = = = = = = = = = = = 1.00 = 1.00 1.00 = 1.00 = = = = = = = 1.00 = 1.00 = = 1.00 = = = = 1.00 1.00 = = = = 1.00 ? ? = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 ? ? ? 1.00 = 1.00 = 0.56 = 0.58 = 0.57 = 0.77 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? 1.00 = 1.00 = = 1.00 1.00 = = ? 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = = = = = = = = = = = 1.00 1.00 1.00 = = = = = = = = = = = 1.00 = 1.00 = = 1.00 ? ? ? = = = = 1.00 = 1.00 = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 = = = = = 1.00 = = = = = = = = = ? = 0.80 = = = = = = 0.82 0.82 0.82 0.82 0.82 0.82 0.82 = 0.82 = = 0.82 0.82 = 0.82 = = = 0.82 = = = = = = = = 0.86 0.86 0.86 = 0.86 0.86 ? ? = 0.89 = 0.89 0.89 = 0.89 0.89 = 0.89 0.89 0.89 0.89 0.89 = 0.89 0.89 0.89 = = = 0.89 0.89 = = = = = 0.50 0.50 = = = = = = = = = = = = 0.50 0.50 = = = = = = = = = 0.77 = = = 0.77 = 0.77 0.77 = 0.77 0.77 0.77 = 0.77 0.77 0.77 0.77 0.77 = = = 0.77 0.77 = = = 0.77 0.86 0.86 0.86 = 0.86 0.86 0.82 = = = = = = 1.00 1.00 1.00 = = = = = = = = 1.00 1.00 = = = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = 1.00 1.00 = = = = = 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 = = = = 1.00 = 1.00 1.00 1.00 ? = = = = = 1.00 = = = 1.00 = 1.00 1.00 ? ? ? = = = = = = = = = ? ? ? = = 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 = = = = = 0.66 0.66 0.66 = ? 0.66 0.65 = = = = 0.66 = = = = ? = = = = = = = 0.67 0.67 = = = 0.67 = = 0.67 0.67 0.67 0.67 0.67 0.67 = = 0.87 = 0.87 = 0.87 0.87 = = = = = 0.92 0.92 = 0.92 0.92 = 0.92 0.92 0.92 0.92 0.92 0.92 0.92 = 0.92 = 0.92 0.92 0.75 = = = = = = = = = = = = = = = = = = = 0.68 0.68 0.68 = = = = = = = = = 0.68 = 0.68 = = = = = = = = = = = = = = 0.69 0.69 0.69 0.69 0.69 0.69 0.69 = 0.69 = 0.98 0.98 0.98 = ? = = = = 0.99 1.00 = = = = = = = = = = = = = = = = = = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 = 1.00 1.00 1.00 1.00 = = = = = 1.00 1.00 1.00 = = = 1.00 1.00 1.00 1.00 = = 1.00 = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 = = = = 1.00 1.00 = 1.00 = 1.00 = 1.00 1.00 = = = = = = 1.00 = = = 1.00 = = = 1.00 0.99 0.99 = 0.99 = 0.99 = = = = = = = ? 0.99 0.99 0.99 0.99 = 0.99 0.99 = 0.99 = = = = = 0.76 0.76 0.81 = 0.76 = 0.77 = = 0.82 0.82 0.82 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = 1.00 = 1.00 = = = = = = = = 1.00 = 1.00 = = 1.00 = 1.00 1.00 = = = = = = = = = = = = = = ? = = = = = = = = = = = 1.00 = = ? ? = 1.00 = = = = = = = = = = = ? 1.00 = = = = ? ? ? = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.54 = = = = = 0.56 0.56 0.56 0.56 = = = = = = = = 0.56 0.56 = = = 0.56 = = 0.56 0.56 0.56 0.56 0.56 0.56 = = = = = = = = = = = = = = = = = = = = = = = = = = 0.94 = = 0.94 0.94 = 0.66 0.85 0.85 = = 0.85 0.85 0.85 = = = = = = = 0.85 = 0.85 0.85 = 0.85 0.85 = = = = = = = 0.88 = = = 0.88 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.54 = = = 0.51 = = = 0.65 0.65 0.65 = = = = = = = = 0.65 0.65 = = = 0.65 = = 0.65 0.65 0.65 0.65 0.65 0.65 = = = = = = = = = = 0.92 = 0.92 0.92 0.92 = 0.92 0.92 = 0.92 0.92 0.92 0.92 0.92 0.92 0.92 = 0.92 = 0.92 0.92 = 0.91 0.79 = 0.79 0.79 = 0.79 0.79 = = = 0.79 = = = = = = = 0.79 = = = = ? = = = = = = 0.63 0.63 = = = = = 0.52 0.52 0.52 = 0.52 0.52 0.52 0.52 0.52 = = = = = 0.52 = = = = = = 0.69 0.69 = = = 0.76 = = = 0.91 = = 0.88 0.88 0.88 = = = = = = = = = = = = = = = = = = = = = = 1.00 = 1.00 = 1.00 = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 = 1.00 1.00 ? 1.00 1.00 = = 1.00 1.00 = = = = = = = = 1.00 1.00 1.00 = = = = = 1.00 = 1.00 = = = ? 0.50 0.50 0.50 = 0.50 0.50 = = = = = = 0.50 = = = = 0.50 = = = = = 0.82 0.82 0.82 = = 0.78 = = = = = = = = = = 1.00 1.00 1.00 1.00 = 1.00 = = = = = 1.00 = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = 0.54 = 0.54 = = 0.54 0.54 = = = = = = = = = = 0.54 = 0.54 0.54 = = = = = = = = = 0.51 = = = = = = = ? = = = = = = = 0.50 = = = = = = = = = = = = = = = = = = = = 0.62 = = 0.65 0.65 0.65 0.65 0.65 0.65 0.65 = 0.65 = = 0.65 0.65 = 0.65 = = = 0.65 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.57 0.57 = = 0.84 0.84 0.84 0.84 = = = = 0.84 0.84 = = = = = = 0.84 = = = 0.84 = = = = = = = = 0.70 = = = 0.82 = 0.82 0.82 = 0.82 = 0.82 0.82 0.82 0.82 0.82 = = = = = = = = 0.82 = = 0.78 0.78 0.78 = 0.78 0.78 0.78 = = 0.80 0.78 = = 0.81 0.81 0.81 = = = = = = = = 0.81 0.81 = = = 0.81 = = 0.81 0.81 0.81 0.81 0.81 ? = = = = = = = = = = = = = 0.68 0.68 0.68 = = = 0.68 0.68 0.68 0.68 = = 0.68 = 0.68 0.68 0.68 0.68 = = = 0.80 0.80 0.80 0.80 = = = = = 0.80 = = = 0.80 ? 0.80 0.80 0.80 0.80 0.80 = = = = = = 0.69 0.69 0.69 = = 0.69 = = 0.71 = 0.71 0.71 0.71 0.71 0.71 = 0.71 0.71 0.71 0.71 0.71 = = = 0.71 0.71 = = = 0.71 = = = = = = = = = = = = = 0.77 0.77 0.77 0.77 0.77 0.77 0.77 0.77 0.77 0.77 0.77 0.77 = = = 0.77 = 0.77 = = = = = = = 0.80 0.80 = = = = = = = = 0.80 = 0.80 0.80 = = 0.80 = 0.80 0.80 0.80 0.80 0.80 = = 0.80 0.80 0.80 = = = 0.75 = = = = = = = = = = 0.67 = = = = = = = = 0.67 0.67 0.67 = = = = = = = 0.57 = = = 0.57 = = 0.73 = 0.73 0.73 0.73 0.73 0.73 = 0.73 0.73 0.73 0.73 0.73 = = = 0.73 0.73 = = = 0.73 0.52 0.53 0.52 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.65 = = 0.65 0.65 0.65 = = 0.85 0.85 0.85 0.85 = = = = 0.85 0.85 = = = 0.85 = 0.85 0.85 = = = 0.87 = = = = = 0.82 = 0.82 = = = = = 0.98 = 0.98 0.98 0.98 0.98 0.98 = 0.98 0.98 0.98 = 0.98 = = = 0.98 0.98 = = = 0.98 ? = = = = = 0.77 = = = 0.77 = = = = = 0.80 0.80 0.80 0.80 = 0.80 = = = 0.81 = = 0.81 0.81 0.81 = 0.81 0.81 0.81 0.81 0.81 0.81 0.98 = 0.98 = 0.98 = 0.98 0.98 = = 0.98 0.98 0.98 0.98 = = 0.98 = 0.98 0.98 0.98 0.98 0.98 = = 0.98 0.98 0.98 = = = = = = 0.81 0.81 0.81 0.81 = = = = = 0.81 = = = 0.81 = 0.81 0.81 0.81 0.81 0.81 = = = = = = 0.51 = 0.51 = 0.51 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.65 = 0.65 = = = = = = = = = = = = = = = = 0.64 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.77 = = 0.77 0.77 = 0.78 1.00 1.00 = = 1.00 1.00 1.00 = = ? = = 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 1.00 = 1.00 = = 1.00 = = = = = = = 1.00 = 1.00 = 1.00 = = = = = = = = = = = = 1.00 = = = = = = 0.89 0.89 = = = 0.98 = = = 1.00 = = = = = = = = = 1.00 = 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 = = = = = = = = = = = = = = = = 1.00 = ? 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 1.00 1.00 = = = = = = = = = ? ? = = = = = = = = = = = 1.00 = = = = = = 1.00 = = = = = 1.00 = 1.00 1.00 = ? 1.00 1.00 = 1.00 1.00 1.00 = 1.00 = = = ? ? ? = = 1.00 = 0.67 0.67 = = = = = = = = = = 0.86 0.86 0.86 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = = = 1.00 1.00 1.00 1.00 = = 1.00 = 1.00 1.00 1.00 = 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 = = 1.00 1.00 = = = = = = = = 1.00 1.00 = = 1.00 = = 1.00 1.00 = 1.00 1.00 = = = = = ? ? ? 0.55 0.55 0.55 = 0.55 0.55 0.55 = 0.55 = = = 0.55 0.55 = = = 0.55 0.64 0.64 0.64 = 0.64 0.64 0.52 = = = 0.53 = = = = = = = = = = = = = = = = = = 0.66 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.76 0.76 = = = 0.93 = = = 0.93 0.93 = 0.93 = = 0.93 = = = = 0.93 0.93 0.93 = = = = = = = 0.93 = = = 0.93 = = 0.64 = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = 0.65 0.65 0.65 0.65 0.65 0.65 0.65 = 0.65 = = 0.65 0.65 = 0.65 = = = 0.65 = = = = = = = = = = = = = = = = 0.65 = 0.65 ? ? 0.65 0.65 0.65 = = = = = 0.65 0.65 = = = 0.65 = = 0.53 = = 0.68 0.68 0.68 0.68 = = = = 0.68 0.68 = = = 0.68 = 0.68 0.68 = = = 0.84 = 0.84 = = 0.84 = 0.74 = = = 0.74 = = = = 0.82 0.82 ? 0.82 0.82 = 0.82 0.82 0.82 = 0.82 = = = 0.82 0.82 = = = 0.82 ? 0.91 0.91 = = = 0.96 = 0.93 = = = 0.78 = = = 1.00 = = = = = 1.00 1.00 = = = 1.00 1.00 = = 1.00 = 1.00 = 1.00 ? 1.00 ? ? ? = = = = = = = = = = 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = 1.00 1.00 = = = = ? = = = = = = = 1.00 = = = = = = = = = = = = = = = = = ? ? ? = 1.00 = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = ? ? ? = = = 1.00 1.00 1.00 1.00 = = = = = = = = 1.00 1.00 = = = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = 1.00 = = 1.00 1.00 = = 1.00 1.00 1.00 = = = = = = ? 1.00 = 1.00 1.00 = 1.00 1.00 1.00 = 1.00 = = 1.00 ? ? ? = 1.00 = = 0.56 = 0.56 = 0.56 = = = = = = = = = = = = 0.56 = = = = = = 0.78 0.78 = = = = = = = ? ? = 0.78 0.78 0.78 ? 0.78 0.78 0.78 0.78 0.78 0.78 0.78 0.78 = = = 0.78 = 0.78 = = = = = = = = = = = = = = = = = 0.75 = 0.75 = = = = = = ? ? ? ? ? 0.75 = = = = = = 0.75 0.75 = = = = ? = = = = = = = 0.75 = = = = = = = = 0.75 = 0.75 = = 0.75 = = = ? = = = 0.75 0.75 0.75 = 0.75 = = = = = = = 0.75 = = = = ? ? ? = = = = = = = = = 0.81 = = ? ? ? = 1.00 1.00 1.00 = = = = = = = = 1.00 1.00 = = = 1.00 = = 1.00 1.00 1.00 1.00 1.00 ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.63 = = = = = ? ? = = = ? = = = = = = ? = = = = = = = = = = = = = = ? ? = = = ? ? ? = 0.55 = = = 0.58 0.58 = = = = = = = = = = 0.76 0.76 0.76 ? = = = = = = = 0.86 0.86 = = = = = = = 0.86 0.86 0.86 0.86 0.86 = = = = = = = = = = 0.89 = 0.89 = = 0.89 0.89 0.89 = = = = = 0.89 0.89 = = = 0.89 = = 0.83 = 0.87 = 0.87 = = 0.87 0.87 0.87 0.87 = = = = 0.87 = = = = = 0.87 0.87 0.78 = 0.78 = = 0.78 = = = = = = = = 0.52 = = = = = = = = = = 0.52 = = = = = = = = = = 0.90 0.90 0.90 = 0.90 0.90 = = = = = = = 0.98 0.98 0.98 = = = = = = = = 0.98 0.98 = = = 0.98 = = 0.98 0.98 0.98 0.98 0.98 0.98 = = = = = = = = = = = 0.52 = = = = = = = = = = = = = = = = = = = 0.57 = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.57 = 0.57 = = = ? 0.57 0.57 0.57 = 0.57 = = = = = = = = = = = = 0.57 = = = = = = = = = = = 0.89 = = = = = 0.85 = = = 0.91 0.91 0.91 0.91 = 0.91 = = = = = 0.91 = 0.91 = 0.91 0.91 0.91 0.91 0.91 0.91 0.91 = = = = = = = = = = = = = 0.91 0.91 = 0.91 0.91 = 0.91 0.91 0.91 0.91 0.91 = 0.91 0.91 0.91 = = ? 0.91 0.91 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.59 = = = 0.57 0.57 0.57 = 0.57 0.57 = = = = = = 0.57 = = = = 0.57 = = 0.57 = = 0.51 0.51 0.51 = = = = = = = = = = 0.55 0.55 0.55 = = = = = = = = = = = = = 0.52 = = = = = = = = = = = = = = = = = = 0.77 = 0.77 0.77 0.77 = 0.77 0.77 = 0.77 0.77 0.77 0.77 0.77 0.77 0.77 0.77 0.77 = = = 0.67 = = 0.98 0.98 0.98 0.98 = = = = = 0.98 = = = 0.98 = 0.98 0.98 0.98 0.98 0.98 = = = = = = 0.89 0.89 0.89 = = 0.89 = = 0.89 = 0.89 0.89 ? = 0.89 0.89 0.89 0.89 0.89 = = = = = = = = = = = 0.85 0.85 0.85 = 0.85 0.85 0.87 = = = 0.87 = = = = = 0.88 0.88 0.88 0.88 = 0.88 = = = = = 0.88 = 0.88 = 0.88 0.88 0.88 0.88 0.88 0.88 0.88 = 0.68 0.68 = 0.68 = 0.68 0.68 = = = = = = = = = = = = = = = = = = = = = = = = 0.59 = = = = = = = = = = = = 0.55 = = = = = = = = = = = = = = = 0.56 = = = 0.56 = = 0.61 = 0.61 0.61 0.61 0.61 0.61 = 0.61 0.61 0.61 0.61 0.61 = = = 0.61 0.61 = = = 0.61 END PHASEPROBS