Site CDNA-Pos Description Allele1 AD-freq ED-freq Total-freq Allele2 AD-freq ED-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 000198 00000 ------------ G 0.93 1.00 0.97 C 0.07 0.00 0.03 0000 --- --- --- --- 000386 00000 ------------ G 0.95 1.00 0.98 C 0.05 0.00 0.02 0000 --- --- --- --- 000461 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 000497 00000 ------------ C 0.95 1.00 0.98 T 0.05 0.00 0.02 0000 --- --- --- --- 000688 00000 ------------ T 0.95 1.00 0.98 C 0.05 0.00 0.02 0000 --- --- --- --- 000696 00000 ------------ G 0.95 1.00 0.98 A 0.05 0.00 0.02 0000 --- --- --- --- 000721 00000 ------------ T 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 000764 00000 ------------ A 0.75 0.63 0.69 T 0.25 0.37 0.31 0000 --- --- --- --- 001428 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 001490 00000 ------------ A 0.94 0.65 0.80 G 0.06 0.35 0.20 0000 --- --- --- --- 001491 00000 ------------ T 1.00 0.93 0.97 G 0.00 0.07 0.03 0000 --- --- --- --- 001522 00000 ------------ T 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 001580 00000 ------------ C 0.98 0.98 0.98 G 0.02 0.02 0.02 0000 --- --- --- --- 001735 00000 ------------ C 0.85 1.00 0.92 G 0.15 0.00 0.08 0000 --- --- --- --- 001751 00000 ------------ G 0.98 0.98 0.98 A 0.02 0.02 0.02 0000 --- --- --- --- 001909 00000 ------------ C 0.95 1.00 0.98 T 0.05 0.00 0.02 0000 --- --- --- --- 001927 00000 ------------ - 0.03 0.30 0.19 + 0.97 0.70 0.81 0000 --- --- --- --- 001938 00000 ------------ A 0.93 0.72 0.82 C 0.07 0.28 0.18 0000 --- --- --- --- 002047 00000 ------------ - 0.93 1.00 0.97 + 0.07 0.00 0.03 0000 --- --- --- --- 002262 00000 ------------ C 1.00 0.87 0.93 T 0.00 0.13 0.07 0000 --- --- --- --- 002388 00000 ------------ G 0.52 0.80 0.66 T 0.48 0.20 0.34 0000 --- --- --- --- 002518 00000 ------------ C 0.57 0.80 0.68 G 0.43 0.20 0.32 0000 --- --- --- --- 002780 00120 5' UTR G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 002952 00000 ------------ G 0.75 0.67 0.71 A 0.25 0.33 0.29 0000 --- --- --- --- 003213 00000 ------------ - 0.00 0.02 0.01 + 1.00 0.98 0.99 0000 --- --- --- --- 003428 00000 ------------ - 0.98 1.00 0.99 + 0.02 0.00 0.01 0000 --- --- --- --- 003450 00000 ------------ T 0.96 0.74 0.85 C 0.04 0.26 0.15 0000 --- --- --- --- 003483 00000 ------------ T 0.94 0.63 0.79 G 0.06 0.37 0.21 0000 --- --- --- --- 003532 00000 ------------ - 0.10 0.13 0.12 + 0.90 0.87 0.88 0000 --- --- --- --- 003543 00000 ------------ C 0.67 0.57 0.62 A 0.33 0.43 0.38 0000 --- --- --- --- 004138 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 004197 00000 ------------ G 1.00 0.95 0.98 T 0.00 0.05 0.02 0000 --- --- --- --- 004333 00000 ------------ T 1.00 0.97 0.99 C 0.00 0.03 0.01 0000 --- --- --- --- 004376 00000 ------------ T 1.00 0.95 0.98 G 0.00 0.05 0.02 0000 --- --- --- --- 004685 00000 ------------ A 0.65 0.57 0.61 T 0.35 0.43 0.39 0000 --- --- --- --- 004686 00000 ------------ A 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 004717 00000 ------------ A 0.98 0.98 0.98 G 0.02 0.02 0.02 0000 --- --- --- --- 004925 00000 ------------ A 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 004937 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 005090 00000 ------------ G 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 005096 00000 ------------ G 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 005131 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 005785 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 005798 00000 ------------ G 0.81 1.00 0.90 A 0.19 0.00 0.10 0000 --- --- --- --- 006012 00000 ------------ A 0.96 1.00 0.98 G 0.04 0.00 0.02 0000 --- --- --- --- 006039 00000 ------------ C 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 006117 00000 ------------ A 0.96 1.00 0.98 G 0.04 0.00 0.02 0000 --- --- --- --- 006201 00000 ------------ A 0.94 0.70 0.82 G 0.06 0.30 0.18 0000 --- --- --- --- 006266 00000 ------------ A 0.92 1.00 0.96 G 0.08 0.00 0.04 0000 --- --- --- --- 006515 00000 ------------ G 0.83 1.00 0.91 A 0.17 0.00 0.09 0000 --- --- --- --- 006675 00000 ------------ T 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 006703 00000 ------------ A 0.83 1.00 0.91 G 0.17 0.00 0.09 0000 --- --- --- --- 006783 00000 ------------ G 1.00 0.87 0.94 T 0.00 0.13 0.06 0000 --- --- --- --- 007178 00000 ------------ A 0.73 0.55 0.64 G 0.27 0.45 0.36 0000 --- --- --- --- 007393 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 007675 00000 ------------ T 0.83 1.00 0.91 G 0.17 0.00 0.09 0000 --- --- --- --- 007872 00000 ------------ C 0.62 0.59 0.61 T 0.38 0.41 0.39 0000 --- --- --- --- 008069 00000 ------------ T 0.83 1.00 0.91 C 0.17 0.00 0.09 0000 --- --- --- --- 008699 00000 ------------ T 0.90 0.87 0.88 A 0.10 0.13 0.12 0000 --- --- --- --- 008706 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 008720 00000 ------------ A 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 009249 00000 ------------ G 1.00 0.87 0.93 A 0.00 0.13 0.07 0000 --- --- --- --- 010076 00000 ------------ C 0.76 0.72 0.74 T 0.24 0.28 0.26 0000 --- --- --- --- 010350 00000 ------------ C 0.97 1.00 0.99 G 0.03 0.00 0.01 0000 --- --- --- --- 010541 00000 ------------ C 0.81 1.00 0.92 T 0.19 0.00 0.08 0000 --- --- --- --- 010942 00000 ------------ A 0.88 0.87 0.87 T 0.12 0.13 0.13 0000 --- --- --- --- 011001 00000 ------------ T 0.84 0.98 0.91 C 0.16 0.02 0.09 0000 --- --- --- --- 011187 00000 ------------ T 0.85 0.98 0.91 C 0.15 0.02 0.09 0000 --- --- --- --- 011233* 011598 00000 ------------ A 0.87 1.00 0.93 T 0.13 0.00 0.07 0000 --- --- --- --- 011809 00000 ------------ G 0.95 1.00 0.98 A 0.05 0.00 0.02 0000 --- --- --- --- 011901 00000 ------------ G 0.66 0.43 0.54 A 0.34 0.57 0.46 0000 --- --- --- --- 011971 00000 ------------ C 0.98 0.76 0.87 T 0.02 0.24 0.13 0000 --- --- --- --- 012151 00000 ------------ C 0.84 1.00 0.92 T 0.16 0.00 0.08 0000 --- --- --- --- 012244 00000 ------------ T 0.98 0.96 0.97 C 0.02 0.04 0.03 0000 --- --- --- --- 012552 00000 ------------ C 0.93 1.00 0.97 A 0.07 0.00 0.03 0000 --- --- --- --- 013334 00000 ------------ A 0.97 0.93 0.94 T 0.03 0.07 0.06 0000 --- --- --- --- 013385 00000 ------------ C 0.63 0.45 0.53 T 0.37 0.55 0.47 0000 --- --- --- --- 014205 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 014396 00000 ------------ T 0.94 0.53 0.77 C 0.06 0.47 0.23 0000 --- --- --- --- 014501 00000 ------------ C 0.85 1.00 0.91 A 0.15 0.00 0.09 0000 --- --- --- --- 014888 00000 ------------ G 1.00 0.89 0.95 A 0.00 0.11 0.05 0000 --- --- --- --- 015151 00000 ------------ C 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 015279 00000 ------------ A 0.88 0.80 0.84 G 0.12 0.20 0.16 0000 --- --- --- --- 015895 00000 ------------ C 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 016234 00000 ------------ C 0.83 1.00 0.91 G 0.17 0.00 0.09 0000 --- --- --- --- 016392 00000 ------------ A 0.42 0.72 0.56 G 0.58 0.28 0.44 0000 --- --- --- --- 016602 00974 SYNON A 0.83 0.91 0.88 G 0.17 0.09 0.12 0267 ACA ACG THR(T) THR(T) 016918 01189 NON-SYN G 0.93 1.00 0.97 T 0.07 0.00 0.03 0339 TGC TTC CYS(C) PHE(F) 017515 00000 ------------ C 0.83 1.00 0.91 A 0.17 0.00 0.09 0000 --- --- --- --- 017645 00000 ------------ C 0.85 1.00 0.93 T 0.15 0.00 0.07 0000 --- --- --- --- 017794 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 018184 00000 ------------ G 0.83 1.00 0.91 A 0.17 0.00 0.09 0000 --- --- --- --- 018290 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 018367 00000 ------------ G 0.83 1.00 0.91 A 0.17 0.00 0.09 0000 --- --- --- --- 018490 00000 ------------ G 0.95 1.00 0.98 A 0.05 0.00 0.02 0000 --- --- --- --- 019109 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 019400 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 019404 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 019642 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 020157 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 020276 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 020327 00000 ------------ G 0.94 0.87 0.90 A 0.06 0.13 0.10 0000 --- --- --- --- 020392 00000 ------------ C 0.77 0.80 0.79 G 0.23 0.20 0.21 0000 --- --- --- --- 020423 00000 ------------ A 0.79 0.80 0.80 G 0.21 0.20 0.20 0000 --- --- --- --- 020691 01364 SYNON T 0.83 0.91 0.87 C 0.17 0.09 0.13 0397 GGT GGC GLY(G) GLY(G) 021102 00000 ------------ T 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 021319 00000 ------------ C 0.94 0.86 0.90 T 0.06 0.14 0.10 0000 --- --- --- --- 021570 00000 ------------ G 0.42 0.72 0.56 A 0.58 0.28 0.44 0000 --- --- --- --- 021639 00000 ------------ C 0.77 0.63 0.70 A 0.23 0.37 0.30 0000 --- --- --- --- 021647 00000 ------------ A 0.83 1.00 0.91 T 0.17 0.00 0.09 0000 --- --- --- --- 021708 00000 ------------ C 0.96 1.00 0.98 G 0.04 0.00 0.02 0000 --- --- --- --- 022173 00000 ------------ G 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 022454 00000 ------------ A 0.96 1.00 0.98 G 0.04 0.00 0.02 0000 --- --- --- --- 022744 00000 ------------ C 0.89 1.00 0.94 T 0.11 0.00 0.06 0000 --- --- --- --- 022771 00000 ------------ C 0.75 0.63 0.69 T 0.25 0.37 0.31 0000 --- --- --- --- 022925 00000 ------------ G 0.89 1.00 0.94 T 0.11 0.00 0.06 0000 --- --- --- --- 024250 01772 SYNON G 0.95 1.00 0.98 A 0.05 0.00 0.02 0533 CAG CAA GLN(Q) GLN(Q) 024358 01880 SYNON C 0.95 1.00 0.98 T 0.05 0.00 0.02 0569 GAC GAT ASP(D) ASP(D) 024453 00000 ------------ - 0.88 1.00 0.94 + 0.12 0.00 0.06 0000 --- --- --- --- 024616 00000 ------------ G 0.45 0.69 0.57 A 0.55 0.31 0.43 0000 --- --- --- --- 024618 00000 ------------ G 0.71 0.79 0.75 A 0.29 0.21 0.25 0000 --- --- --- --- 024660 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 024950 00000 ------------ A 0.88 1.00 0.94 G 0.12 0.00 0.06 0000 --- --- --- --- 025093 01985 SYNON G 0.88 1.00 0.94 T 0.12 0.00 0.06 0604 CGG CGT ARG(R) ARG(R) 025245 02137 3' UTR C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 025424 00000 ------------ A 0.81 0.81 0.81 G 0.19 0.19 0.19 0000 --- --- --- --- 025455 00000 ------------ G 0.50 0.71 0.61 C 0.50 0.29 0.39 0000 --- --- --- --- 025481 00000 ------------ G 0.83 1.00 0.92 A 0.17 0.00 0.08 0000 --- --- --- --- 025638 00000 ------------ A 0.43 0.72 0.58 T 0.57 0.28 0.42 0000 --- --- --- --- 026011 00000 ------------ G 0.84 0.91 0.88 A 0.16 0.09 0.12 0000 --- --- --- --- 026044 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 026260 00000 ------------ C 0.50 0.73 0.62 T 0.50 0.27 0.38 0000 --- --- --- --- 026380 00000 ------------ C 0.50 0.73 0.62 T 0.50 0.27 0.38 0000 --- --- --- --- NOTE: AD-freq: African Descent frequency ED-freq: European Descent frequency NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 001927: TAGTCCCAGCT 002047: AAAG 003213: CA 003428: AGGAGGG 003532: TA 011233: AAA 024453: T The following site(s) was observed to have three alleles. The frequency for each allele is given below: Site Allele1 AD-freq ED-freq Total-freq Allele2 AD-freq ED-freq Total-freq Allele3 AD-freq ED-freq Total-freq 011233 - 0.00 0.02 0.01 A 0.04 0.00 0.02 AAA 0.96 0.98 0.97