************************************************************* **** **** **** Output from PHASE v2.0 **** **** Code by M Stephens, with contributions from N Li **** **** **** ************************************************************* BEGIN COMMAND_LINE /home/qyi/lib/phase/PHASE2 -d1 fct10.phase.inp fct10.phase.out END COMMAND_LINE BEGIN OUTFILE_LIST fct10.phase.out_freqs : haplotype frequency estimates fct10.phase.out_pairs : most likely haplotype pairs for each individual fct10.phase.out_recom : estimates of recombination parameters fct10.phase.out_monitor : file for monitoring convergence END OUTFILE_LIST BEGIN INPUT_SUMMARY Number of Individuals: 47 Number of Loci: 57 Positions of loci: 152 577 713 880 1116 1319 1449 1451 2011 2456 2527 3715 3740 4544 5413 5521 6098 6445 8493 8724 8910 8946 9043 9091 9147 9223 9501 10628 11450 11962 12324 13457 13732 13785 14772 14881 16047 16673 16893 17257 17396 18352 20174 20641 21849 22476 22607 23305 23890 24465 24536 25262 25694 26242 26348 26405 28696 END INPUT_SUMMARY List of haplotypes found in best reconstruction, with counts. (See file fct10.phase.out_freqs for haplotype population frequency estimates) BEGIN LIST_SUMMARY 1 GCTGDDCAACTCATTGGATTGCAATAGCGGAATCCCTTCCAGCGAGTGGGGGGTGGT 1.000000 2 GCTGDDCCACTCATTGGACTTGAACAGCCAGGTCTTTTGTCGTGGGTGAGGGGTGGT 1.000000 3 GCTGDDCCACTCATTGGACTTGAACAGCCGGGTCTTTTGCCGTGGGTGGGAGGTGGT 1.000000 4 GCTGDDCCACTCGCCGGCCGGCAGCGGAGAAATCCCTAGCCACGGGTGGAGGGTGGT 1.000000 5 GCTGDDCCGCTTGCCGGACGGCAGCGGCGGAATCCCTAGCAATGAGTGGGAGACGGG 1.000000 6 GCTGDDTCACTCATCGGACTGCAACATCGAAATCCCTACCAGCGGGTGGAGGGTGGT 1.000000 7 GCTGDDTCACTCATTGGATTGCAATAGCGAAATCCCTACCAGCGGGTGGGGGACGGT 1.000000 8 GCTGDDTCACTCATTGGATTGCAATAGCGGAATCCCTACCAGCGGGTGGAGGGTGGT 1.000000 9 GCTGDDTCACTCATTGGATTTGAACAGCCAGGTCTTTTGCCGCGGGTGGGGGACGGT 1.000000 10 GCTGDDTCACTCATTGGACTGCAACAGCCGGGTCTCTTGTCGTGGGTGAAGGACAGT 1.000000 11 GCTGDDTCACTCATTGGACTGCAACAGCCGGGTTTTTACTAGCGGGTGAGGGGTGGT 1.000000 12 GCTGDDTCACTCATTGGACTGCAACAGCCGGGTTTTTTGTCGTGGGTGGAGGGTGGT 1.000000 13 GCTGDDTCACTCATTGGACTGCAACATCGAAATCCCTACCAGCGGGTGGGGGGTGGT 1.000000 14 GCTGDDTCACTCATTGGACTGCAACATCGAAATCCCTACCAGCGGGTGAAGGACGGT 1.000000 15 GCTGDDTCACTCATTGGACTGGAACAGCGAAATCTCTTGCAGCGGGTGGGGGACGGT 1.000000 16 GCTGDDTCACTCATTGGACTTGAACAGCCAGGTCTTTTGCCGTGGGTGGGGGGTGGT 2.000000 17 GCTGDDTCACTCATTGGACTTGAACAGCCAGGTCTTTTGTCGTGGGTGGAGGGTGGT 1.000000 18 GCTGDDTCACTCATTGGACTTGAACAGCCAGGTCTTTTGTCGTGGGTGAAGGACAGT 1.000000 19 GCTGDDTCACTCATTGGACTTGAACAGCCAGGTTTTTTGTCGTGGGTGGAGGACGGT 1.000000 20 GCTGDDTCACTCATTGGACTTGAACAGCCAGGTTTTTTGTCGTGGGTGGAGGGTGGT 1.000000 21 GCTGDDTCACTCATTGGACTTGAACAGCCAGGCCTTTTGTCGTGGGTGGAGGGTGGT 1.000000 22 GCTGDDTCACTCATTGGACTTGAACAGCCGGGTCTTTTGTCGTGGGTGGGAGACGGG 1.000000 23 GCTGDDTCACTCATTGGACTTGAACAGACAGGTTTTTTGTCGTGGGTGGAGGGTAGT 1.000000 24 GCTGDDTCACTCATTGGACTTGAACAGACGGGTTTTTTGTCGCGGGAGGGGGGTGGT 2.000000 25 GCTGDDTCACTCGCTGGACTGGAACAGCGAAATCTCTTGCAGTGAATGGGGGACAGT 2.000000 26 GCTGDDTCACTCGCTGGACTGGAACAGCGGAATCTCTTGCAGCGGGTGGAGGGTGGT 1.000000 27 GCTGDDTCACTCGTCGGACGGCAGCGGCGGAATCCCTAGCCACAGGTGGAGGGTGGT 1.000000 28 GCTGDDTCACTCGTTGGACTGCAACATCGAAATCCCTACCAGCGGGTGAAGGACGGT 1.000000 29 GCTGDDTCACTCGTTGGACGGCAGCAGCGAAATCCCAAGCAGCGGGTGGAGGGTGGT 1.000000 30 GCTGDDTCACTCGTTAGACTGGAACAGCGAAATCTCTAGCAGCGGGTGGAGGGTGGT 1.000000 31 GCTGDDTCACTCGTTAGACTGGAACAGCGAAATCTCTTGCAGCGGGTGGAGGGTGGT 2.000000 32 GCTGDDTCACTCGTTAGACTGGAACAGCGAAATCTCTTGCAGCGGGTGGGGGACGGT 1.000000 33 GCTGDDTCACTCGTTAGACTGGAACAGCGAAATCTCTTGCAGCGGGTGGGGGGTGGT 1.000000 34 GCTGDDTCACTTGCCGGACGGCAGCGGCGGAATCCCTAGCAATGAGTGGGAGACGGG 1.000000 35 GCTGDDTCACCCGCTGGACTGGAACAGCCGGGTCTTTTGTCGTGGGTGGAGGACGGG 1.000000 36 GCTGDDTCGCTCATTGGATTGCAATAGCGAAATCCCTACCAGCGGGTGGGGGGTGGT 1.000000 37 GCTGDDTCGCTCATTGGATTGCAGCAGCGGAATCCCTACCAGCGGGTGAGGAACGCT 1.000000 38 GCTGDDTCGCTCGCTGGACTGGAACAGCGAGATCTCTTGCAGCGAATGGGAGACAGT 1.000000 39 GCTGIDTCACTCATCGGACTGCAACGGCGAAATCCCAAGCAGCGGGTGGAAGACGGT 1.000000 40 GCTGIDTCACTCGCCGGCCGGCAGCGGCGGAATCCCTAGCCACGGGTGGGGGGTGGT 1.000000 41 GCTGIDTCACTCGTTAGACTGCAACAGCGGAATCTCTTGCAGCGGGTGGAGGGTGGT 1.000000 42 GCTGIDTCACTCGTTAGACTGCAACAGCGGAATCTCTTGCAGCGGGTGAAGGACGGT 1.000000 43 GCTGIDTCGACCGCTGGACTGGAACAGCGAAACCTCTTGCAGCGGGTGGGAGACAGT 1.000000 44 GCTGIDTCGACCGCTGGACTGGAACAGCGAAACCTCTTGCAGCGGGTGGGAAACGCT 1.000000 45 GCTGIICAGCTCATTGGATTGCAATAGCGGAATCCCTACTAGCGAGTGGGGGACAGT 1.000000 46 GCCGDDTCACTCGCTGGACTGCAACAGCGGAATCCCTAGCAGCGAGTGGGAGACGGT 1.000000 47 GCCGDICCACTCATTGGACTTGAACAGCCGGGTCTTTTGTCGTGGGTGAGGAACGCT 1.000000 48 GCCGDICCACTCGCCGGCCGGCAGCGGCGAAATCCCTAGCCACAGGTGGAGGGTGGT 1.000000 49 GCCGDICCACTCGCCGGCCGGCAGCGGAGAAATCCCTAGCCACGGGTGGGGGGTGGT 1.000000 50 GCCGDICCACTTGTTGAATTGCAACATCGAAATCCCTACCAGCGGGAGGGGGACGGT 1.000000 51 GCCGDICCACTTGTTGAATTGCAACATCGAAATCCCTACCAGTGGGTGGAGGGTGGT 1.000000 52 GCCGDICCACTTGTTGGATTGCAACAGCGAAATCCCTACCAGCGGGTGGAGGGTGGT 1.000000 53 GCCGDICCACCTGCCGGACTGCAACAGCGAAATCCCAAGCAGCGGGTGGGGGACGGT 1.000000 54 GCCGDICCGCTCATTGGATTGCAACAGCGAAATCCCTACCAGCGGGTGGGGGGTGGT 1.000000 55 GCCGDICCGCCTGCTGGACTGCAACAGCGGAATCCCTAGCAGCGAGTGGAGGGTGGT 1.000000 56 GTTGDDTCACTCGCCGGCCGGCAGCGGCGAAATCTCTTGCAGCGGGTGGAGGGTGGT 1.000000 57 GTTGDICAACTCATTGGATTGCAACAGCCGGGTCTTTTGTCGTGGGTGGAGGGTGGT 1.000000 58 GTTGDICAACTCATTGGATTGCAATAGCGAAATCCCTACCAGCGGGTGGGGGGTGGT 2.000000 59 GTTGDICAACTCATTGGATTGCAATAGCGAAATCCCTACTAGCGGGTGGGGGGTGGT 1.000000 60 GTTGDICAACTCATTGGATTGCAATAGCGGAATCCCTACCAGCGAGTGGGGGGTGGT 1.000000 61 GTTGDICAACTCATTGGACTGCAGCAGCGGAATCCCTACCAGCGGGTGGGGGGTGGT 1.000000 62 GTTGDICAACTCATTGGACTGCCACATCGAAATCCCTACCAGCGGGTAGAGGGTGGT 2.000000 63 GTTGDICAACTCATTGGACTGGAACAGCGAAATCTCTTGCAGCGGGTGGGGGGTGGT 1.000000 64 GTTGDICAACTCATTGGACTTGAACAGACAGGTCTTTTGTCGTGGGTGGAGGGTGGT 1.000000 65 GTTGDICAACTCATTGGACGGCAGCGGCGAAATCCCTAGCCACAGGTGGAGGGTGGT 1.000000 66 GTTGDICAGCTCATTGGATTGCAACAGCGAAATCCCTACCAGCGGGAGGGGGGTGGT 1.000000 67 GTTGDICAGCTCATTGGATTGCAACAGCGAAATCCCTACCAGCGGGTGGAGGGTGGT 1.000000 68 GTTGDICAGCTCATTGGATTGCAACAGCGAAATCCCTACTAGCGGGTGGGGGGTGGT 1.000000 69 GTTGDICAGCTCATTGGATTGCAACAGCGGAATCCCTACCAGCGGGTGAGGGGTGGT 1.000000 70 GTTGDICAGCTCATTGGACTTGAACAGCCAGGTCTTTTGTCGTGGGTGGGGGACGGT 1.000000 71 GTTGDICAGCTCATTGGACTTGAACAGCCAGGTCTTTTGTCGTGGGTAGGGGGTGGT 1.000000 72 GTTGIICAACTCATTGGACTGCCACATCGAAATCCCTACCAGCGGGTAGAGGGTGGT 1.000000 73 GTTGIICAACTCGCCGGCTTGCAGCGGCGGAATCCCTAGCCACGGGAGGGGGACAGT 1.000000 74 GTTGIICAACTCGTTAGACTGGAACAGCGGAATCTCTTGCAGCGGGTGGAGGGTGGT 3.000000 75 GTTGIICAACTCGTTAGACTGGAACAGCGGAATCTCTTGCAGCGGGTGGGGGGTGGT 1.000000 76 GTTGIICAGCTCATTGGATTGCAACAGCGAAATCCCTACCAGCGAGTGAGGGACGGT 1.000000 77 GTTGIICAGCTCATTGGATTGCAACAGCGAAATCCCTACCAGCGAGTGAGGGGTGGT 2.000000 78 GTTGIICAGCTCATTGGATTGCAACAGCGAAATCCCTACCAGCGGGTGAGGGGTGGT 1.000000 79 GTTGIICAGCTCATTGGACTTGAACAGCCAGGTCTTTTGTCGTGGGTGAGGGACGGT 1.000000 80 GTTGIICAGCTCATTGGACTTGAACAGCCGGGTCTTTTGTCGTGGGTGGGGGACGGT 1.000000 81 GTCGDICCACTTGTTGAATTGCAACATCGAAATCCCTACCAGCGGGAGGGGGGTGGT 1.000000 82 CCTCDDTCACTCATTGGACTTGAACAGCCAGGTTTTTTGTCGTGGGTGGAGGGTGGT 1.000000 83 CCTCDDTCACTCATTGGACTTGAACAGCCAGGTTTTTTGTCGTGGGTGGGGGGTGGT 1.000000 84 CCTCDDTCACTCATTGGACTTGAACAGACAGGTTTTTTGTCGTGGGTGGGGGGTGGT 1.000000 85 CCTCDDTCACTCGTTGGATTGCAATAGCGAAATCCCTACCAGCGGGTGGGGGGTGGT 1.000000 END LIST_SUMMARY Summary of best reconstruction (numbers refer to the list of haplotypes given above) BEGIN BESTPAIRS_SUMMARY D001: (73,1) D002: (35,51) D003: (2,40) D004: (50,79) D005: (52,81) D006: (7,55) D007: (24,47) D008: (38,44) D009: (5,53) D010: (4,29) D011: (21,22) D012: (3,25) D013: (39,46) D014: (26,54) D015: (9,34) D016: (36,37) D033: (15,75) D034: (10,43) D035: (11,45) D036: (12,16) D037: (18,23) D038: (17,41) D039: (24,25) D040: (14,61) E001: (30,78) E002: (16,77) E003: (62,69) E004: (13,32) E005: (33,65) E006: (64,31) E007: (20,85) E008: (60,27) E009: (67,70) E010: (58,63) E011: (49,77) E012: (28,31) E013: (72,82) E014: (56,66) E015: (48,76) E016: (8,74) E017: (19,74) E018: (6,74) E019: (62,71) E020: (80,83) E021: (42,57) E022: (58,84) E023: (59,68) END BESTPAIRS_SUMMARY Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in []: BEGIN BESTPAIRS1 0 D001 G (T) T G (I) (I) C A A C T C (G) C (C) G G (C) T T G C A G C G G C G [G] A A T C C C T A G C C A C G G G A G G G G G A C A G T G (C) T G (D) (D) C A A C T C (A) [T] (T) G G (A) T T G C A A T A G C G [G] A A T C C C T T [C] C A G C G A G T G G [G] G G G T G G T 0 D002 G C (T) G D (D) (T) C A C (C) C G C T G G A C T G G A A C A G C C G G G T C T T T T G [T] C G T G G G T G G A G G (A) [C] G G (G) G C (C) G D (I) (C) C A C (T) T G T T G A A T T G C A A C A T C G A A A T C C C T A C C A G T G G G T G G A G G (G) [T] G G (T) 0 D003 G C T G D D C C A C T C A T T G G A C T T G A A C A G C C A G G T C T T T T G T C G T G G G T G A G G G G T G G T G C T G I D T C A C T C G C C G G [C] C G G C A G C G G C G G A A T C C C T A G C C A C G G G T G G G G G G T G G T 0 D004 G (C) (C) G (D) I C (C) A C T T G T T G A A T T G C A A C A T C G A A A T C C C T A C C A G C G G G A G (G) G G G A C G G T G (T) (T) G (I) I C (A) G C T C A T T G G A C T T G A A C A G C C A G G T C T T T T G T C G T G G G T G (A) G G G A C G G T 0 D005 G (C) C G D I C C A C T T G T T G G A T T G C A A C A G C G A A A T C C C T A C C A G C G G G (T) G G (A) G G G T G G T G (T) C G D I C C A C T T G T T G A A T T G C A A C A T C G A A A T C C C T A C C A G C G G G (A) G G (G) G G G T G G T 0 D006 G C (T) G D (D) (T) C (A) C T (C) A T T G G A T T G C A A T A G C G A A A T C C C T A C C A G C G G G T G G (G) G G (A) (C) G G T G C (C) G D (I) (C) C (G) C C (T) G C T G G A C T G C A A C A G C G G A A T C C C T A G C A G C G A G T G G (A) G G (G) (T) G G T 0 D007 G C (T) G D (D) (T) C A C T C A T T G G A C T T G A A C A G (A) C G G G T (T) T T T T G T C G (C) G G G (A) G (G) G G (G) (G) (T) G (G) T G C (C) G D (I) (C) C A C T C A T T G G A C T T G A A C A G (C) C G G G T (C) T T T T G T C G (T) G G G (T) G (A) G G (A) (A) (C) G (C) T 0 D008 G C T G (D) D T C G (C) (T) C G C T G G A C T G G A A C A G C G A (G) A (T) C T C T T G C A G C G A A T G G G A G A C A G T G C T G (I) D T C G (A) (C) C G C T G G A C T G G A A C A G C G A (A) A (C) C T C T T G C A G C G G G T G G G A A A C G C T 0 D009 G C (T) G D (D) C C (G) C T T G C C G G A C G G C A G C G G C G (G) A A T C C C T A G C A A T G A G T G G G A G A C G G G G C (C) G D (I) C C (A) C [C] T G C C G G A C T G C A A C A G C G (A) A A T C C C A A G C A G C G G G T G G G G G A C G G T 0 D010 G C T G D D (C) C A C T C G (C) (C) G G (C) C G G C A G C G G [A] G A A A T C C C T A G C C A C G G G T G G A G G G T G G T G C T G D D (T) C A C T C G (T) (T) G G (A) C G G C A G C A G C G A A A T C C C A A G C A G C G G G T G G A G G G T G G T 0 D011 G C T G D D T C A C T C A T T G G A C T T G A A C A G C C (A) G G (C) C T T T T G T C G T G G G T G G A G G G T G G T G C T G D D T C A C T C A T T G G A C T T G A A C A G C C (G) G G (T) C T T T T G T C G T G G G T G G G A G A C G G G 0 D012 G C T G D D (C) C A C T C A T T G G A C T T G A A C A G C C (G) G G T C T T T T G C C G T G G G T G G G (A) G (G) (T) (G) G T G C T G D D (T) C A C T C G C T G G A C T G G A A C A G C G (A) A A T C T C T T G C A G T G A A T G G G (G) G (A) (C) (A) G T 0 D013 G C T G I D T C A C T C A T C G G A C T G C A A C G G C G A A A T C C C A A G C A G C G G G T G G A A G A C G G T G C C G D D T C A C T C G C T G G A C T G C A A C A G C G G A A T C C C T A G C A G C G A G T G G G A G A C G G T 0 D014 G C (T) G D (D) (T) C A C T C G C T G G A C T G G A A C A G C G G A A T C T C T T G C A G C G G G T G G A G G G T G G T G C (C) G D (I) (C) C [G] C T C A T T G G A T T G C A A C A G C G A A A T C C C T A C C A G C G G G T G G G G G G T G G T 0 D015 G C T G D D T C A C T C A T T G G A (T) T T G A A C A G C C (A) G G T C T T T T G C C G C G G G T G G G G G A C G G T G C T G D D T C A C T T G C C G G A (C) G G C A G C G G C G (G) A A T C C C T A G C A A T G A G T G G G A G A C G G G 0 D016 G C T G D D T C G C T C A T T G G A T T G C A (A) (T) A G C G (A) A A T C C C T A C C A G C G G G T G (G) G G G G T G G T G C T G D D T C G C T C A T T G G A T T G C A (G) (C) A G C G (G) A A T C C C T A C C A G C G G G T G (A) G G A A C G C T 0 D033 G C T G D D T C A C T C A T T G G A C T G G A A C A G C G A A A T C T C T T G C A G C G G G T G G G G G A C G G T G T T G I I C A A C T C G T T A G A C T G G A A C A G C G G A A T C T C T T G C A G C G G G T G G G G G G T G G T 0 D034 G C T G (D) D T C A C T C A T T G G A C T G C A A C A G C C G G G (T) C [T] C T T G T C G T G G G T G A A G G A C A G T G C T G (I) D T C [G] [A] [C] C G C T G G A C T G G A A C A G C G A A A (C) C T C T T G C A G C G G G T G G G [A] G A C A G T 0 D035 G C T G (D) (D) (T) (C) (A) C T C A T T G G A C T G C A A C A G C C G G G T T T T T A C T A G C G (G) G T G (A) G G G (G) (T) (G) G T G C T G (I) (I) (C) (A) (G) C T C A T T G G A T T G C A A T A G C G G A A T C C C T A C T A G C G (A) G T G (G) G G G (A) (C) (A) G T 0 D036 G C T G D D T C A C T C A T T G G A C T (G) (C) A A C A G C C (G) G G T (T) T T T T G (T) C G T G G G T G G [A] G G G T G G T G C T G D D T C A C T C A T T G G A C T (T) (G) A A C A G C C (A) G G T (C) T T T T G (C) C G T G G G T G G [G] G G G T G G T 0 D037 G C T G D D T C A C T C A T T G G A C T T G A A C A G (C) C A G G T (C) T T T T G T C G T G G G T G A [A] G G A C A G T G C T G D D T C A C T C A T T G G A C T T G A A C A G (A) C A G G T (T) T T T T G T C G T G G G T G G [A] G G G T A G T 0 D038 G C T G (D) D T C A C T C A T T G G A C T T G A A C A G C C [A] G G T C T T T T G T C G T G G G T G G [A] G G G T G G T G C T G (I) D T C A C T C G T T A G A C T G C A A C A G C G G A A T C T C T T G C A G C G G G T G G [A] G G G T G G T 0 D039 G C T G D D T C A C T C A T T G G A C T T G A A C A G A C G G G T T T T T T G T C G C G G G A G G G G G G T G G T G C T G D D T C A C T C G C T G G A C T G G A A C A G C G A A A T C T C T T G C A G T G A A T G G G G G A C A G T 0 D040 G (C) T G D (D) (T) (C) A C T C A T T G G A C T G C A (A) C A (T) C G (A) A A T C C C T A C C A G C G G G T G (A) (A) G G (A) (C) G G T G (T) T G D (I) (C) (A) A C T C A T T G G A C T G C A (G) C A (G) C G (G) A A T C C C T A C C A G C G G G T G (G) (G) G G (G) (T) G G T 0 E001 G (C) T G (D) (D) (T) (C) A C T C G T T A G A C T G G A A C A G C G A A A T C T C T A G C A G C G G G T G (G) (A) G G G T G G T G (T) T G (I) (I) (C) (A) G C T C A T T G G A T T G C A A C A G C G A A A T C C C T A C C A G C G G G T G (A) (G) G G G T G G T 0 E002 G C T G D D T C A C T C A T T G G A C T T G A A C A G C C A G G T C T T T T G C C G T G (G) G T G (G) G G G G T G G T G T T G [I] I C A G C T C A T T G G A T T G C A A C A G C G A A A T C C C T A C C A G C G (A) G T G (A) G G G G T G G T 0 E003 G T T G [D] I C A A C T C A T T G G A C T G C C A C A T C G A A A T C C C T A C C A G C G G G T A (G) (A) G G G T G G T G T T G [D] I C A G C T C A T T G G A T T G C A A C A G C G G A A T C C C T A C C A G C G G G T G (A) (G) G G G T G G T 0 E004 G C T G D D T C A C T C (A) T T (G) G A C T G C A A C A T C G A A A T C C C T A C C A G C G G G T G G G G G (G) (T) G G T G C T G D D T C A C T C (G) T T (A) G A C T G G A A C A G C G A A A T C T C T T G C A G C G G G T G G G G G (A) (C) G G T 0 E005 G (C) T G D (D) (T) (C) A C T C (G) T T (A) G A C T G G A A C A G C G A A A T C T C T T G C A G C G G G T G G (G) G G G T G G T G (T) T G [D] (I) (C) (A) A C T C (A) T T (G) G A C G G C A G C G G C G A A A T C C C T A G C C A C A G G T G G (A) G G G T G G T 0 E006 G (T) T G D (I) (C) (A) A C T C A T T G G A C T T G A A C A G A C A G G T C T T T T G T C G T G G G T G G A G G G T G G T G (C) T G [D] (D) (T) (C) A C T C G T T A G A C T G G A A C A G C G A A A T C T C T T G C A G C G G G T G G A G G G T G G T 0 E007 G C T G D D T C A C T C A T T G G A C T T G A A C A G C C A G G T T T T T T G T C G T G G G T G G [A] G G G T G G T C C T C D D T C A C T C G T T [G] G A T T G C A A T A G C G A A A T C C C T A C C A G C G G G T G G [G] G G G T G G T 0 E008 G (T) T G D (I) (C) (A) A C T C A T T G G A T T G C A A T A G C G G A A T C C C T A C C A G C G (A) G T G G G G G G T G G T G (C) T G [D] (D) (T) (C) A C T C G T C G G A C G G C A G C G G C G G A A T C C C T A G C C A C A (G) G T G G A G G G T G G T 0 E009 G T T G D I C A G C T C A T T G G A T T G C A A C A G C G A A A T C C C T A C C A G C G G G T G G (A) G G (G) [T] [G] G T G T T G D I C A G C T C A T T G G A C T T G A A C A G C C A G G T C T T T T G T C G T G G G T G G (G) G G (A) [C] [G] G T 0 E010 G T T G D I C A A C T C A T T G G A T T G C A A T A G C G A A A T C C C T A C C A G C G G G T G G G G G G T G G T G T T G D I C A A C T C A T T G G A C T G G A A C A G C G A A A T C T C T T G C A G C G G G T G G G G G G T G G T 0 E011 G (C) (C) G (D) I C (C) A C T C G C C G G C C G G C A G C G G A G A A A T C C C T A G C C A C G (G) G T G (G) G G G G T G G T G (T) (T) G (I) I C (A) G C T C A T T G G A T T G C A A C A G C G A A A T C C C T A C C A G C G (A) G T G (A) G G G G T G G T 0 E012 G C T G D D T C A C T C G T T (G) G A C T G C A A C A T C G A A A T C C C T A C C A G C G G G T G (A) A G G (A) (C) G G T G C T G D D T C A C T C G T T (A) G A C T G G A A C A G C G A A A T C T C T T G C A G C G G G T G (G) A G G (G) (T) G G T 0 E013 G T T G I I C A A C T C A T T G G A C T G C C A C A T C G A A A T C C C T A C C A G C G G G T A G [A] G G G T G G T C C T C D D T C A C T C A T T G G A C T T G A A C A G C C A G G T T T T T T G T C G T G G G T G G [A] G G G T G G T 0 E014 G T T G D D T C A C T C G C C G G C C G G C A G C G G C G [A] A A T C T C T T G C A G C G G G (T) G G [A] G G G T G G T G T T G D I C A [G] C T C A T T G G A T T G C A A C A G C G A A A T C C C T A C C A G C G G G (A) G G [G] G G G T G G T 0 E015 G (C) (C) G (D) I C (C) A C T C G C C G G C C G G C A G C G G C G A A A T C C C T A G C C A C A (G) G T G (G) (A) G G (G) (T) G G T G (T) (T) G (I) I C (A) G C T C A T T G G A T T G C A A C A G C G A A A T C C C T A C C A G C G (A) G T G (A) (G) G G (A) (C) G G T 0 E016 G (C) T G D (D) (T) (C) A C T C A T T G G A T T G C A A T A G C G G A A T C C C T A C C A G C G G G T G G A G G G T G G T G (T) T G [I] (I) (C) (A) A C T C G T T A G A C T G G A A C A G C G G A A T C T C T T G C A G C G G G T G G A G G G T G G T 0 E017 G C T G D D T C A C T C A T T G G A C T T G A A C A G C C A G G T [T] T T T T G T C G T G G G T G G A G G (A) [C] [G] G T G T T G I I C A A C T C G T T A G A C T G G A A C A G C G G A A T C T C T T G C A G C G G G T G G A G G (G) [T] [G] G T 0 E018 G (C) T G [D] (D) (T) (C) A C T C A T (C) G G A C T G C A A C A T C G A A A T C C C T A C C A G C G G G T G G A G G G T G G T G (T) T G [I] (I) (C) (A) A C T C G T (T) A G A C T G G A A C A G C G G A A T C T C T T G C A G C G G G T G G A G G G T G G T 0 E019 G T T G D I C A A C T C A T T G G A C T G C C A C A T C G A A A T C C C T A C C A G C G G G T A G (A) G G G T G G T G T T G D I C A [G] C T C A T T G G A C T T G A A C A G C C A G G T [C] T T T T G T C G T G G G T A G (G) G G G T G G T 0 E020 G T T G I I C A G C T C A T T G G A C T T G A A C A G C C G G G T C T T T T G T C G T G G G T G G [G] G G (A) (C) G G T C C T C D D T C A C T C A T T G G A C T T G A A C A G C C A G G T T T T T T G T C G T G G G T G G [G] G G (G) (T) G G T 0 E021 G (C) T G (I) (D) (T) (C) A C T C G T T A G A C T G C A A C A G C G G A A T C T C T T G C A G C G G G T G A A G G A C G G T G (T) T G (D) (I) (C) (A) A C T C A T T G G A T T G C A A C A G C [C] G G G T C T T T T G T C G T G G G T G G A G G G T G G T 0 E022 G T T G D I C A A C T C A T T G G A T T G C A A T A G C G A A A T C C C T A C C A G C G G G T G G G G G G T G G T C C T C D D T C A C T C A T T G G A C T T G A A C A G A C [A] G G T T T T T T G T C G T G G G T G G G G G G T G G T 0 E023 G T T G D I C A A C T C A T T G G A T T G C A A T A G C G A A A T C C C T A C T A G C G G G T G G G G G G T G G T G T T G D I C A G C T C A T T G G A T T G C A A C A G C G A A A T C C C T A C T A G C G G G T G G G G G G T G G T END BESTPAIRS1 Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in [] with phase known positions indicated by = BEGIN BESTPAIRS2 0 D001 = (T) = = (I) (I) = = = = = = (G) ? (C) = ? (C) = = = = = G C G = = = ? = = = = = = = A ? = C A = = G = A = = ? ? = A C A = = = (C) = = (D) (D) = = = = = = (A) ? (T) = ? (A) = = = = = A T A = = = ? = = = = = = = T ? = A G = = A = T = = ? ? = G T G = = 0 D002 = = (T) = = (D) (T) = = = (C) C = C = = G = C = = G = = = = G = C G G G = = T T = T G ? C = = = = = = = = = = = (A) ? ? ? (G) = = (C) = = (I) (C) = = = (T) T = T = = A = T = = C = = = = T = G A A A = = C C = A C ? A = = = = = = = = = = = (G) ? ? ? (T) 0 D003 = = = ? D = C = = = = = A T T = = ? = T T G = A = A = = C A G G = = T T = T = T = G T = = = = = A = = ? = = = = = = = = ? I = T = = = = = G C C = = ? = G G C = G = G = = G G A A = = C C = A = C = A C = = = = = G = = ? = = = = = 0 D004 = (C) (C) ? (D) = = (C) A = = T G = = = ? ? T = G C = = = = T = G = A A = = C C = ? C C A = C = = = A = (G) = = = = = = = = = (T) (T) ? (I) = = (A) G = = C A = = = ? ? C = T G = = = = G = C = G G = = T T = ? G T C = T = = = T = (A) = = = = = = = = 0 D005 = (C) = = = = = = = = = = = = = = G = = = = = = = = = G = = = = = = = = = ? = = = = = = = = = (T) = = (A) = = = = = = = = (T) = = = = = = = = = = = = = = A = = = = = = = = = T = = = = = = = = = ? = = = = = = = = = (A) = = (G) = = = = = = = 0 D006 = = (T) = = (D) (T) = (A) = T (C) A T = = ? ? T = = = = = T = = = = A = = = = = = ? = C = = = = = G = = = = (G) = = (A) (C) = = = = = (C) = = (I) (C) = (G) = C (T) G C = = ? ? C = = = = = C = = = = G = = = = = = ? = G = = = = = A = = = = (A) = = (G) (T) = = = 0 D007 = = (T) = = (D) (T) = = = = = = = = = = = = ? = = = = = = = (A) = = = = = (T) = = = = = = = = (C) = = = (A) = (G) = = (G) (G) (T) = (G) = = = (C) = = (I) (C) = = = = = = = = = = = = ? = = = = = = = (C) = = = = = (C) = = = = = = = = (T) = = = (T) = (A) = = (A) (A) (C) = (C) = 0 D008 = = = = (D) = = = = (C) (T) = = = = = = = = = = = = = = = = = = = (G) = (T) = = = ? = = = ? = = = A A = = = ? = G = = A G = = = = = (I) = = = = (A) (C) = = = = = = = = = = = = = = = = = = = (A) = (C) = = = ? = = = ? = = = G G = = = ? = A = = G C = 0 D009 = = (T) = = (D) = = (G) ? ? = = = = = = = = G = = = G = G = = = (G) = = = = = = T = = = = A T = A = = ? = = A = = = = = G = = (C) = = (I) = = (A) ? ? = = = = = = = = T = = = A = A = = = (A) = = = = = = A = = = = G C = G = = ? = = G = = = = = T 0 D010 = = = = = = (C) = ? ? ? = = (C) (C) = = (C) ? = = = = = = G = ? = = = = = = = = T = = = C A = = = = = = = = ? = = = = = = = = = = = = (T) = ? ? ? = = (T) (T) = = (A) ? = = = = = = A = ? = = = = = = = = A = = = A G = = = = = = = = ? = = = = = = 0 D011 = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = (A) = = (C) = = = = = = = = = = = = = = = = A G = G T = = T = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = (G) = = (T) = = = = = = = = = = = = = = = = G A = A C = = G 0 D012 = = = = = = (C) = ? ? ? = A T = = = = = = T = = = = = = = C (G) G G = = = T = = = = C = = = G G = = = = (A) = (G) (T) (G) = = = = = = = = (T) = ? ? ? = G C = = = = = = G = = = = = = = G (A) A A = = = C = = = = A = = = A A = = = = (G) = (A) (C) (A) = = 0 D013 = = T = I = = = = ? ? = A T C = = = = = = = = = = G = = = A = = = = = = A = = = = = = = G = = = = A = = = = = = = = = C = D = = = = ? ? = G C T = = = = = = = = = = A = = = G = = = = = = T = = = = = = = A = = = = G = = = = = = = 0 D014 = = (T) = = (D) (T) = ? ? ? = G C = = = = C = = G = = = = = = = G = = = = T = = T G ? = ? = ? = = = = = A = = = = = = = = = (C) = = (I) (C) = ? ? ? = A T = = = = T = = C = = = = = = = A = = = = C = = A C ? = ? = ? = = = = = G = = = = = = = 0 D015 = = = = = = = = = ? ? C A T T = = = (T) T T G = A = A = = C (A) ? G = = T T = T = = C G C = G = = = = = G = = = = = T = = = = = = = = = ? ? T G C C = = = (C) G G C = G = G = = G (G) ? A = = C C = A = = A A T = A = = = = = A = = = = = G 0 D016 = = = = = = = = = ? ? = = = = = = = = = = = = (A) (T) = = = ? (A) ? = = = = = = = = = = ? = = = = = = (G) = = G G T = G = = = = = = = = = = ? ? = = = = = = = = = = = = (G) (C) = = = ? (G) ? = = = = = = = = = = ? = = = = = = (A) = = A A C = C = 0 D033 = C = = D D T C = = = = A = = G = = = = = = = = = = = ? = A = = = = = = = ? ? = = ? = = = = = ? = = = = A C = = = = T = = I I C A = = = = G = = A = = = = = = = = = = = ? = G = = = = = = = ? ? = = ? = = = = = ? = = = = G T = = = 0 D034 = = = = (D) = = = ? ? ? = A T = = = = = = = C = = = = = = C G G G (T) = ? = = = = T ? = ? = = = = = A A ? = = = = = = = = = = (I) = = = ? ? ? = G C = = = = = = = G = = = = = = G A A A (C) = ? = = = = C ? = ? = = = = = G G ? = = = = = = 0 D035 = = = = (D) (D) (T) (C) (A) ? ? = = = = = = = C = = = = = C = = = C = G G = T T T = ? = = = = = = (G) = = = (A) = = = (G) (T) (G) = = = = = = (I) (I) (C) (A) (G) ? ? = = = = = = = T = = = = = T = = = G = A A = C C C = ? = = = = = = (A) = = = (G) = = = (A) (C) (A) = = 0 D036 = = = = = = = = = ? ? = = = = = ? = = = (G) (C) = = = = = = = (G) = = = (T) = = = ? = (T) = = = = = = = = = ? ? = = = = = = = = = = = = = = = ? ? = = = = = ? = = = (T) (G) = = = = = = = (A) = = = (C) = = = ? = (C) = = = = = = = = = ? ? = = = = = = 0 D037 = = = = = = = = = ? ? = = = = = = = ? = = = = = = = = (C) = = = = = (C) = = = = = = ? = ? = = = = = A ? ? = A C = = = = = = = = = = = = ? ? = = = = = = = ? = = = = = = = = (A) = = = = = (T) = = = = = = ? = ? = = = = = G ? ? = G T = = = 0 D038 = = = = (D) = = = = ? ? = A = = G = = = = T G = = = = = = C ? G G = = = T = = = T ? = T = = = = = = ? ? = = = = = = = = = = (I) = = = = ? ? = G = = A = = = = G C = = = = = = G ? A A = = = C = = = C ? = C = = = = = = ? ? = = = = = = 0 D039 = = = = = = = = = ? ? = A T = = = = = = T = = = = = = A C G ? G = T = T = = = ? ? = C = G G A = = = = = G T G = = = = = = = = = = = ? ? = G C = = = = = = G = = = = = = C G A ? A = C = C = = = ? ? = T = A A T = = = = = A C A = = 0 D040 = (C) = = ? (D) (T) (C) ? ? ? = = = = = = = = = = = = (A) = = (T) = = (A) = = = = = = = = = ? = = = = = = = = (A) (A) = = (A) (C) = = = = (T) = = ? (I) (C) (A) ? ? ? = = = = = = = = = = = = (G) = = (G) = = (G) = = = = = = = = = ? = = = = = = = = (G) (G) = = (G) (T) = = = 0 E001 = (C) = = (D) (D) (T) (C) A ? ? = G = = A ? ? C = = G = = = = = = = = = = = = T = = = G = ? = = = = = = = (G) (A) = = = = = = = = (T) = = (I) (I) (C) (A) G ? ? = A = = G ? ? T = = C = = = = = = = = = = = = C = = = C = ? = = = = = = = (A) (G) = = = = = = = 0 E002 = C = = ? D T C A ? ? = = = = = = = C = T G = = = ? = = C = G G = = T T = T G = C = T = (G) = = = (G) = = = = = = = = = T = = ? I C A G ? ? = = = = = = = T = G C = = = ? = = G = A A = = C C = A C = A = C = (A) = = = (A) = = = = = = = = 0 E003 = = = = ? = = = A ? ? = = = = = = = C = = = C = = = T = = A = = = = = = = = = = = = = = = = = A (G) (A) = = = = = = = = = = = ? = = = G ? ? = = = = = = = T = = = A = = = G = = G = = = = = = = = = = = = = = = = = G (A) (G) = = = = = = = 0 E004 = = = = = = = = = ? ? = (A) = = (G) = = = = = C = = = = T = = = = = = = C = = A C = = = = = = = = = = = = = (G) (T) = = = = = = = = = = = = ? ? = (G) = = (A) = = = = = G = = = = G = = = = = = = T = = T G = = = = = = = = = = = = = (A) (C) = = = 0 E005 = (C) = = ? (D) (T) (C) = = = = (G) = = (A) = = = T = G = A = A = = = = = = = = T = = T = = A G = G = = = ? = (G) = = = = = = = = (T) = = ? (I) (C) (A) = = = = (A) = = (G) = = = G = C = G = G = = = = = = = = C = = A = = C A = A = = = ? = (A) = = = = = = = 0 E006 = (T) = = ? (I) (C) (A) ? ? ? = A = = G = = = = T = = = = = = A C = ? G = = = T = = = T C = T = = = = = = = = = = = = = = = (C) = = ? (D) (T) (C) ? ? ? = G = = A = = = = G = = = = = = C G = ? A = = = C = = = C A = C = = = = = = = = = = = = = = 0 E007 G = = G = = = = ? ? ? = A = = ? = = ? = T G = = C = = = ? = ? G = T T T = T G ? C = T = = = = ? ? ? ? = = = = = = C = = C = = = = ? ? ? = G = = ? = = ? = G C = = T = = = ? = ? A = C C C = A C ? A = C = = = = ? ? ? ? = = = = = = 0 E008 = (T) = = ? (I) (C) (A) = ? ? = A = T = = = T T = = = A T A = = = = = = = = = = = = C = A G = G (A) = ? ? = G = = = = = = = = (C) = = ? (D) (T) (C) = ? ? = G = C = = = C G = = = G C G = = = = = = = = = = = = G = C A = A (G) = ? ? = A = = = = = = = 0 E009 = = = = = = = = = = = = = = = = = = T = G C = = = = = = ? = A A = = C C = A C C A = ? = = = = = = (A) = ? (G) ? ? ? = = = = = = = = = = = = = = = = = = = C = T G = = = = = = ? = G G = = T T = T G T C = ? = = = = = = (G) = ? (A) ? ? ? = 0 E010 = = = = = = = = = ? ? = = = = = ? = ? = = C = = T = = = = = ? = = = C = = A C = = = = = = = = = ? = = = = = = = = = = = = = = = = = ? ? = = = = = ? = ? = = G = = C = = = = = ? = = = T = = T G = = = = = = = = = ? = = = = = = = = 0 E011 = (C) (C) = (D) = = (C) A ? ? = G ? C = = C C G = = = G = G = A = = = = = = = = = = G = C A = = (G) = = = (G) = = = = = = = = = (T) (T) = (I) = = (A) G ? ? = A ? T = = A T T = = = A = A = C = = = = = = = = = = C = A G = = (A) = = = (A) = = = = = = = = 0 E012 = = = = = = = = = ? ? = = = = (G) = = = = = C = = = = T = = = = = = = C = = A C = = = = = = = = = (A) = = = (A) (C) = = = = = = = = = = = = ? ? = = = = (A) = = = = = G = = = = G = = = = = = = T = = T G = = = = = = = = = (G) = = = (G) (T) = = = 0 E013 G T = G I I C A = ? ? = = ? = = = = = = G C C = = = T = ? = A A = C C C = A C C A = C = = = = A = ? ? = = = = = = C C = C D D T C = ? ? = = ? = = = = = = T G A = = = G = ? = G G = T T T = T G T C = T = = = = G = ? ? = = = = = = 0 E014 = = = = = D T C ? ? ? = G C C = = C C G = = = G = G = = = ? ? = = = T = = T G = ? = = = = = (T) ? = ? ? = = = = = = = = = = = I C A ? ? ? = A T T = = A T T = = = A = A = = = ? ? = = = C = = A C = ? = = = = = (A) ? = ? ? = = = = = = 0 E015 = (C) (C) = (D) = = (C) A ? ? = G C C = = C C G = = = G = G = = = = = = ? ? = = = = G = C A = A (G) = = = (G) (A) = = (G) (T) = = = = (T) (T) = (I) = = (A) G ? ? = A T T = = A T T = = = A = A = = = = = = ? ? = = = = C = A G = G (A) = = = (A) (G) = = (A) (C) = = = 0 E016 = (C) = ? ? (D) (T) (C) = ? ? = A = = G = = ? = = C = = T = = = = = = = = = C = = A C = = = = = = = ? = = = = = = = = = = = (T) = ? ? (I) (C) (A) = ? ? = G = = A = = ? = = G = = C = = = = = = = = = T = = T G = = = = = = = ? = = = = = = = = = = 0 E017 = C = = D D T C = = = = A = = G ? = = = T = = = = = = = C A G ? ? ? = T = = = T C = T = = = = = = = = = (A) ? ? ? = = T = = I I C A = = = = G = = A ? = = = G = = = = = = = G G A ? ? ? = C = = = C A = C = = = = = = = = = (G) ? ? ? = 0 E018 = (C) = ? ? (D) (T) (C) = ? ? = A ? (C) G = = = = = C = = = = T = = A ? = = = C = = A C = = = = = = = = = = = = = = = = = = = (T) = ? ? (I) (C) (A) = ? ? = G ? (T) A = = = = = G = = = = G = = G ? = = = T = = T G = = = = = = = = = = = = = = = = = = 0 E019 ? = = = = = = = ? ? ? = = = = = = = = = G C C = = = T ? G = A A ? ? C C = A C C A = C = = = = = = (A) = = = = = = = ? = = = = = = = ? ? ? = = = = = = = = = T G A = = = G ? C = G G ? ? T T = T G T C = T = = = = = = (G) = = = = = = = 0 E020 G T = G I I C A G ? ? ? = = = = = = = = = = = = = = = = ? G = = = C ? ? = = = = ? = = = = = = = ? ? ? ? (A) (C) = = = C C = C D D T C A ? ? ? = = = = = = = = = = = = = = = = ? A = = = T ? ? = = = = ? = = = = = = = ? ? ? ? (G) (T) = = = 0 E021 ? (C) = = (I) (D) (T) (C) = ? ? = G = ? ? ? = C = = = = = = = = = ? = A A = = = C = = = C A = C = = = = = A = = = A C = = = ? (T) = = (D) (I) (C) (A) = ? ? = A = ? ? ? = T = = = = = = = = = ? = G G = = = T = = = T C = T = = = = = G = = = G T = = = 0 E022 G T = G ? I C A = ? ? = = ? = = = = T = G C = = T = = C ? ? ? A = C C C = A C C A = C = = = = ? = = ? = = = = = = C C = C ? D T C = ? ? = = ? = = = = C = T G = = C = = A ? ? ? G = T T T = T G T C = T = = = = ? = = ? = = = = = = 0 E023 = = = = = = = = A ? ? = = = = = = = ? = = = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G ? ? = = = = = = = ? = = = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = END BESTPAIRS2 Phase probabilities at each site with phase known positions indicated by = and missing data positions indicated by ? BEGIN PHASEPROBS = 0.51 = = 0.70 0.51 = = = = = = 0.85 ? 0.85 = ? 0.85 = = = = = 1.00 1.00 1.00 = = = ? = = = = = = = 1.00 ? = 1.00 1.00 = = 1.00 = 1.00 = = ? ? = 1.00 1.00 1.00 = = = = 0.85 = = 0.85 0.85 = = = 0.78 1.00 = 1.00 = = 1.00 = 1.00 = = 1.00 = = = = 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 1.00 ? 1.00 = = = = = = = = = = = 0.51 ? ? ? 0.51 = = = ? 1.00 = 1.00 = = = = = 1.00 1.00 1.00 = = ? = 1.00 1.00 1.00 = 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 = 1.00 = 1.00 1.00 = = = = = 1.00 = = ? = = = = = = 0.64 0.89 ? 0.86 = = 0.89 0.94 = = 1.00 1.00 = = = ? ? 1.00 = 1.00 1.00 = = = = 1.00 = 1.00 = 1.00 1.00 = = 1.00 1.00 = ? 1.00 1.00 1.00 = 1.00 = = = 0.98 = 0.55 = = = = = = = = = 0.59 = = = = = = = = = = = = = = 0.96 = = = = = = = = = 0.96 = = = = = = = = = ? = = = = = = = = = 0.90 = = 0.55 = = = = = = = = = 0.81 = = 0.81 0.81 = 0.88 = 1.00 0.88 1.00 1.00 = = ? ? 1.00 = = = = = 1.00 = = = = 1.00 = = = = = = ? = 1.00 = = = = = 1.00 = = = = 0.58 = = 0.58 0.58 = = = = = 0.75 = = 0.75 0.75 = = = = = = = = = = = = ? = = = = = = = 0.88 = = = = = 0.88 = = = = = = = = 0.88 = = = 0.88 = 0.77 = = 0.80 0.80 0.80 = 0.80 = = = = = 0.80 = = = = 0.74 0.77 = = = = = = = = = = = = = = = = = = = 0.63 = 0.80 = = = ? = = = ? = = = 0.92 0.92 = = = ? = 0.98 = = 0.98 0.98 = = = 0.53 = = 0.53 = = 0.53 ? ? = = = = = = = = 1.00 = = = 1.00 = 1.00 = = = 0.52 = = = = = = 1.00 = = = = 1.00 1.00 = 1.00 = = ? = = 1.00 = = = = = 1.00 = = = = = = 0.64 = ? ? ? = = 0.80 0.80 = = 0.80 ? = = = = = = 1.00 = ? = = = = = = = = 1.00 = = = 1.00 1.00 = = = = = = = = ? = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = 0.55 = = 0.52 = = = = = = = = = = = = = = = = 0.98 0.98 = 1.00 1.00 = = 1.00 = = = = = = 0.69 = ? ? ? = 1.00 1.00 = = = = = = 1.00 = = = = = = = 1.00 0.88 1.00 1.00 = = = 1.00 = = = = 1.00 = = = 0.97 0.97 = = = = 0.63 = 0.79 0.79 0.79 = = = = 1.00 = 1.00 = = = = ? ? = 1.00 1.00 1.00 = = = = = = = = = = 1.00 = = = 1.00 = = = = = = 1.00 = = = = = = = 1.00 = = = = 1.00 = = = = = = = = = 0.69 = = 0.69 0.69 = ? ? ? = 1.00 1.00 = = = = 1.00 = = 1.00 = = = = = = = 1.00 = = = = 1.00 = = 1.00 1.00 ? = ? = ? = = = = = 1.00 = = = = = = = = = = = = = = = = ? ? 1.00 1.00 1.00 1.00 = = = 0.89 1.00 1.00 1.00 = 1.00 = 1.00 = = 1.00 0.54 ? 1.00 = = 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 = 1.00 = = = = = 1.00 = = = = = 1.00 = = = = = = = = = ? ? = = = = = = = = = = = = 0.55 0.53 = = = ? 0.53 ? = = = = = = = = = = ? = = = = = = 0.75 = = 1.00 1.00 1.00 = 1.00 = = 1.00 = = 1.00 1.00 1.00 1.00 = = = = 1.00 = = 1.00 = = = = = = = = = = = ? = 1.00 = = = = = = = ? ? = = ? = = = = = ? = = = = 1.00 1.00 = = = = = = = 0.78 = = = ? ? ? = 1.00 1.00 = = = = = = = 1.00 = = = = = = 1.00 1.00 1.00 1.00 0.68 = ? = = = = 1.00 ? = ? = = = = = 1.00 1.00 ? = = = = = = = = = = 0.78 0.86 0.86 0.86 0.84 ? ? = = = = = = = 0.94 = = = = = 0.94 = = = 0.94 = 0.94 0.94 = 0.94 0.94 0.94 = ? = = = = = = 0.66 = = = 0.52 = = = 0.67 0.67 0.67 = = = = = = = = = = = ? ? = = = = = ? = = = 0.83 0.83 = = = = = = = 0.66 = = = 0.69 = = = ? = 0.69 = = = = = = = = = ? ? = = = = = = = = = = = = = = = ? ? = = = = = = = ? = = = = = = = = 0.62 = = = = = 0.56 = = = = = = ? = ? = = = = = 1.00 ? ? = 1.00 1.00 = = = = = = = 0.85 = = = = ? ? = 1.00 = = 1.00 = = = = 1.00 0.98 = = = = = = 1.00 ? 1.00 1.00 = = = 1.00 = = = 1.00 ? = 1.00 = = = = = = ? ? = = = = = = = = = = = = = = = ? ? = 1.00 1.00 = = = = = = 1.00 = = = = = = 1.00 1.00 1.00 ? 1.00 = 1.00 = 1.00 = = = ? ? = 0.98 = 0.99 0.99 0.99 = = = = = 0.98 0.98 0.98 = = = 0.81 = = ? 0.81 0.81 0.81 ? ? ? = = = = = = = = = = = = 0.79 = = 0.83 = = 0.83 = = = = = = = = = ? = = = = = = = = 0.57 0.65 = = 0.70 0.70 = = = = 0.78 = = 0.68 0.78 0.78 0.78 0.99 ? ? = 1.00 = = 1.00 ? ? 1.00 = = 1.00 = = = = = = = = = = = = 1.00 = = = 1.00 = ? = = = = = = = 0.63 0.65 = = = = = = = = 0.91 = = ? 0.91 0.91 0.91 0.94 ? ? = = = = = = = 1.00 = 1.00 1.00 = = = ? = = 1.00 = 1.00 1.00 = = 1.00 1.00 = 1.00 1.00 = 1.00 = 1.00 = 0.88 = = = 0.73 = = = = = = = = = = = = ? = = = 0.97 ? ? = = = = = = = 1.00 = = = 1.00 = = = 1.00 = = 0.92 = = = = = = = = = = = = = = = = = 1.00 0.86 0.74 = = = = = = = = = = = = = = = = ? ? = 0.77 = = 0.81 = = = = = 1.00 = = = = 1.00 = = = = = = = 1.00 = = 1.00 1.00 = = = = = = = = = = = = = 0.54 0.54 = = = = 0.58 = = ? 0.58 0.58 0.58 = = = = 0.76 = = 0.76 = = = 1.00 = 1.00 = 1.00 = 1.00 = = = = = = = = 1.00 = = 1.00 = = 1.00 1.00 = 1.00 = = = ? = 0.53 = = = = = = = = 0.51 = = ? 0.51 0.51 0.51 ? ? ? = 0.98 = = 0.98 = = = = 1.00 = = = = = = 0.94 1.00 = ? 1.00 = = = 1.00 = = = 1.00 1.00 = 1.00 = = = = = = = = = = = = = = 1.00 = = 1.00 = = = = ? ? ? = 1.00 = = ? = = ? = 1.00 1.00 = = 1.00 = = = ? = ? 1.00 = 1.00 1.00 1.00 = 1.00 1.00 ? 1.00 = 1.00 = = = = ? ? ? ? = = = = = = = 0.52 = = ? 0.52 0.52 0.52 = ? ? = 0.98 = 0.98 = = = 1.00 1.00 = = = 1.00 1.00 1.00 = = = = = = = = = = = = 1.00 = 1.00 1.00 = 1.00 0.61 = ? ? = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = 1.00 1.00 = = = = = = ? = 1.00 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 1.00 = ? = = = = = = 0.52 = ? 0.60 ? ? ? = = = = = = = = = = ? ? = = = = = ? = ? = = 1.00 = = 1.00 = = = = = ? = = = 1.00 = = 1.00 1.00 = = = = = = = = = ? = = = = = = = = = 0.86 0.86 = 0.81 = = 0.86 0.98 ? ? = 1.00 ? 1.00 = = 1.00 1.00 1.00 = = = 1.00 = 1.00 = 0.93 = = = = = = = = = = 1.00 = 1.00 1.00 = = 0.86 = = = 0.66 = = = = = = = = = = = = = = = = = ? ? = = = = 0.87 = = = = = 1.00 = = = = 1.00 = = = = = = = 1.00 = = 1.00 1.00 = = = = = = = = = 0.63 = = = 0.63 0.63 = = = 0.91 0.91 = 0.91 0.91 0.91 0.91 0.91 = ? ? = = ? = = = = = = 1.00 1.00 1.00 = = = 1.00 = ? = 1.00 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = = = = 1.00 = ? ? = = = = = = = = = = = 0.93 0.93 0.93 ? ? ? = 1.00 1.00 1.00 = = 1.00 1.00 1.00 = = = 1.00 = 1.00 = = = ? ? = = = 1.00 = = 1.00 1.00 = ? = = = = = 0.58 ? = ? ? = = = = = = = 0.85 0.85 = 0.77 = = 0.85 1.00 ? ? = 1.00 1.00 1.00 = = 1.00 1.00 1.00 = = = 1.00 = 1.00 = = = = = = ? ? = = = = 1.00 = 1.00 1.00 = 1.00 0.88 = = = 0.76 0.72 = = 0.51 0.51 = = = = 0.71 = ? ? 0.71 0.71 0.71 = ? ? = 1.00 = = 1.00 = = ? = = 1.00 = = 1.00 = = = = = = = = = 1.00 = = 1.00 1.00 = = = = = = = ? = = = = = = = = = = = 0.94 = = 0.94 0.94 0.94 0.94 = = = = 1.00 = = 1.00 ? = = = 1.00 = = = = = = = 1.00 1.00 1.00 ? ? ? = 1.00 = = = 1.00 1.00 = 1.00 = = = = = = = = = 0.55 ? ? ? = = 0.90 = ? ? 0.90 0.90 0.90 = ? ? = 0.97 ? 0.77 0.98 = = = = = 0.99 = = = = 0.99 = = 0.99 ? = = = 0.99 = = 0.99 0.99 = = = = = = = = = = = = = = = = = = ? = = = = = = = ? ? ? = = = = = = = = = 1.00 1.00 1.00 = = = 1.00 ? 1.00 = 1.00 1.00 ? ? 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = = = = = = 0.62 = = = = = = = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 0.97 ? ? ? = = = = = = = = = = = = = = = = ? 0.91 = = = 0.91 ? ? = = = = ? = = = = = = = ? ? ? ? 0.56 0.56 = = = ? 0.80 = = 0.81 0.80 0.80 0.80 = ? ? = 1.00 = ? ? ? = 1.00 = = = = = = = = = ? = 1.00 1.00 = = = 1.00 = = = 1.00 1.00 = 1.00 = = = = = 1.00 = = = 1.00 1.00 = = = 0.92 0.92 = 0.92 ? 0.92 0.92 0.92 = ? ? = = ? = = = = 1.00 = 1.00 1.00 = = 1.00 = = 1.00 ? ? ? 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = = = = ? = = ? = = = = = = = = = = = = = = 0.94 ? ? = = = = = = = ? = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = END PHASEPROBS