Site CDNA-Pos Description Allele1 AD-freq ED-freq Total-freq Allele2 AD-freq ED-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 000100 00000 ------------ C 0.89 1.00 0.94 T 0.11 0.00 0.06 0000 --- --- --- --- 000386 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 001171 00000 ------------ C 0.92 1.00 0.96 T 0.08 0.00 0.04 0000 --- --- --- --- 001185 00000 ------------ T 0.92 1.00 0.96 C 0.08 0.00 0.04 0000 --- --- --- --- 001187 00000 ------------ G 0.92 1.00 0.96 A 0.08 0.00 0.04 0000 --- --- --- --- 001385 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 001909 00000 ------------ - 0.19 0.00 0.10 + 0.81 1.00 0.90 0000 --- --- --- --- 001933 00000 ------------ T 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 002248 00000 ------------ G 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 002313 00000 ------------ G 0.70 0.98 0.84 C 0.30 0.02 0.16 0000 --- --- --- --- 002371 00000 ------------ A 0.83 1.00 0.91 C 0.17 0.00 0.09 0000 --- --- --- --- 002474 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 002785 00000 ------------ C 0.68 0.98 0.83 G 0.32 0.02 0.17 0000 --- --- --- --- 002800 00000 ------------ A 0.68 0.98 0.83 T 0.32 0.02 0.17 0000 --- --- --- --- 002820 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 003026 00000 ------------ A 0.68 0.98 0.83 T 0.32 0.02 0.17 0000 --- --- --- --- 003079 00000 ------------ G 0.57 0.98 0.77 T 0.43 0.02 0.23 0000 --- --- --- --- 004405 00000 ------------ - 0.62 0.97 0.80 + 0.38 0.03 0.20 0000 --- --- --- --- 004802 00000 ------------ T 0.93 1.00 0.97 C 0.07 0.00 0.03 0000 --- --- --- --- 004890 00000 ------------ G 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 005171 00000 ------------ G 0.71 0.98 0.84 C 0.29 0.02 0.16 0000 --- --- --- --- 005334 00000 ------------ A 0.90 1.00 0.95 G 0.10 0.00 0.05 0000 --- --- --- --- 005427 00000 ------------ - 0.02 0.00 0.01 + 0.98 1.00 0.99 0000 --- --- --- --- 005500 00000 ------------ C 0.61 0.98 0.79 T 0.39 0.02 0.21 0000 --- --- --- --- 005698 00000 ------------ C 0.87 1.00 0.94 T 0.13 0.00 0.06 0000 --- --- --- --- 005819 00000 ------------ G 0.61 0.98 0.78 A 0.39 0.02 0.22 0000 --- --- --- --- 005830 00000 ------------ T 0.91 1.00 0.95 G 0.09 0.00 0.05 0000 --- --- --- --- 006367 00000 ------------ T 0.57 0.98 0.78 A 0.43 0.02 0.22 0000 --- --- --- --- 006398 00000 ------------ - 0.11 0.00 0.05 + 0.89 1.00 0.95 0000 --- --- --- --- 006975 00000 ------------ T 0.95 1.00 0.98 G 0.05 0.00 0.02 0000 --- --- --- --- 007148 00000 ------------ T 0.90 1.00 0.95 C 0.10 0.00 0.05 0000 --- --- --- --- 007628 00000 ------------ G 0.89 1.00 0.94 A 0.11 0.00 0.06 0000 --- --- --- --- 007901 00000 ------------ T 0.90 1.00 0.95 C 0.10 0.00 0.05 0000 --- --- --- --- 008022 00000 ------------ A 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 009447 00000 ------------ T 0.71 0.98 0.84 C 0.29 0.02 0.16 0000 --- --- --- --- 009454 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 009939 00000 ------------ T 0.89 1.00 0.95 A 0.11 0.00 0.05 0000 --- --- --- --- 010327 00000 ------------ T 0.41 0.98 0.70 C 0.59 0.02 0.30 0000 --- --- --- --- 010360 00000 ------------ A 0.90 1.00 0.95 G 0.10 0.00 0.05 0000 --- --- --- --- 010434 00000 ------------ G 0.54 0.98 0.76 A 0.46 0.02 0.24 0000 --- --- --- --- 010473 00000 ------------ C 0.78 0.98 0.88 T 0.22 0.02 0.12 0000 --- --- --- --- 011648 00000 ------------ - 0.11 0.00 0.05 + 0.89 1.00 0.95 0000 --- --- --- --- 011738 00000 ------------ A 0.88 1.00 0.94 C 0.12 0.00 0.06 0000 --- --- --- --- 011985 00000 ------------ G 0.98 0.98 0.98 A 0.02 0.02 0.02 0000 --- --- --- --- 012146 00000 ------------ - 0.09 0.00 0.05 + 0.91 1.00 0.95 0000 --- --- --- --- 012199 00000 ------------ G 0.89 1.00 0.95 A 0.11 0.00 0.05 0000 --- --- --- --- 012504 00000 ------------ - 0.91 1.00 0.95 + 0.09 0.00 0.05 0000 --- --- --- --- 012542 00000 ------------ A 0.68 0.98 0.83 G 0.32 0.02 0.17 0000 --- --- --- --- 012709 00000 ------------ A 0.92 0.98 0.95 C 0.08 0.02 0.05 0000 --- --- --- --- 012893 00000 ------------ C 0.75 1.00 0.87 T 0.25 0.00 0.13 0000 --- --- --- --- 012996 00000 ------------ G 0.90 1.00 0.95 A 0.10 0.00 0.05 0000 --- --- --- --- 013314 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 013317 00000 ------------ C 0.29 0.73 0.50 T 0.71 0.27 0.50 0000 --- --- --- --- 013684 00000 ------------ C 0.95 1.00 0.98 T 0.05 0.00 0.02 0000 --- --- --- --- 013738 00000 ------------ C 0.93 1.00 0.96 T 0.07 0.00 0.04 0000 --- --- --- --- 013755 00000 ------------ C 0.93 1.00 0.96 T 0.07 0.00 0.04 0000 --- --- --- --- 013884 00000 ------------ G 0.88 1.00 0.94 C 0.12 0.00 0.06 0000 --- --- --- --- 013913 00000 ------------ G 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 013960 00000 ------------ G 0.92 1.00 0.96 C 0.08 0.00 0.04 0000 --- --- --- --- 014176 00000 ------------ T 0.97 1.00 0.99 C 0.03 0.00 0.01 0000 --- --- --- --- 015035 00000 ------------ T 1.00 0.93 0.97 A 0.00 0.07 0.03 0000 --- --- --- --- 015118 00000 ------------ T 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 015430 00000 ------------ - 0.17 0.32 0.24 + 0.83 0.68 0.76 0000 --- --- --- --- 015461 00000 ------------ A 0.95 1.00 0.98 G 0.05 0.00 0.02 0000 --- --- --- --- 015749 00000 ------------ A 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 016143 00000 ------------ C 0.89 1.00 0.95 G 0.11 0.00 0.05 0000 --- --- --- --- 016189 00000 ------------ A 0.89 1.00 0.95 G 0.11 0.00 0.05 0000 --- --- --- --- 016242 00000 ------------ A 1.00 0.93 0.97 G 0.00 0.07 0.03 0000 --- --- --- --- 016329 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 016532 00000 ------------ C 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 016633 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 016723 00000 ------------ T 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 017069 00000 ------------ G 0.75 1.00 0.88 A 0.25 0.00 0.12 0000 --- --- --- --- 017334 00000 ------------ A 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 017452 00000 ------------ T 0.93 1.00 0.97 C 0.07 0.00 0.03 0000 --- --- --- --- 017699 00000 ------------ T 0.89 1.00 0.95 A 0.11 0.00 0.05 0000 --- --- --- --- 017954 00000 ------------ A 0.91 1.00 0.95 T 0.09 0.00 0.05 0000 --- --- --- --- 018105 00000 ------------ A 1.00 0.97 0.99 G 0.00 0.03 0.01 0000 --- --- --- --- 018190 00000 ------------ T 0.91 1.00 0.95 G 0.09 0.00 0.05 0000 --- --- --- --- 018193 00000 ------------ C 0.67 1.00 0.81 T 0.33 0.00 0.19 0000 --- --- --- --- 018377 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 018563 00000 ------------ G 0.95 1.00 0.97 A 0.05 0.00 0.03 0000 --- --- --- --- 018874 00000 ------------ A 1.00 0.97 0.99 G 0.00 0.03 0.01 0000 --- --- --- --- 019037 00000 ------------ C 0.29 0.73 0.50 T 0.71 0.27 0.50 0000 --- --- --- --- 019199 00000 ------------ C 0.90 1.00 0.95 T 0.10 0.00 0.05 0000 --- --- --- --- 019326 00000 ------------ G 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 019567 00000 ------------ A 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 019810 00481 SYNON C 0.89 1.00 0.94 T 0.11 0.00 0.06 0094 ACC ACT THR(T) THR(T) 020222 00000 ------------ T 0.88 0.71 0.78 C 0.12 0.29 0.22 0000 --- --- --- --- 020227 00000 ------------ T 0.87 0.68 0.76 C 0.13 0.32 0.24 0000 --- --- --- --- 020306 00000 ------------ G 1.00 0.98 0.99 C 0.00 0.02 0.01 0000 --- --- --- --- 020477 00000 ------------ T 0.90 1.00 0.95 A 0.10 0.00 0.05 0000 --- --- --- --- 020940 00000 ------------ A 0.31 0.74 0.55 G 0.69 0.26 0.45 0000 --- --- --- --- 020963 00000 ------------ A 0.81 1.00 0.91 C 0.19 0.00 0.09 0000 --- --- --- --- 021156 00000 ------------ T 0.89 1.00 0.95 C 0.11 0.00 0.05 0000 --- --- --- --- 021169 00000 ------------ T 0.89 1.00 0.95 C 0.11 0.00 0.05 0000 --- --- --- --- 021330 00000 ------------ G 0.94 1.00 0.97 A 0.06 0.00 0.03 0000 --- --- --- --- 021502 00000 ------------ G 0.89 1.00 0.95 C 0.11 0.00 0.05 0000 --- --- --- --- 021504 00000 ------------ T 0.97 1.00 0.99 C 0.03 0.00 0.01 0000 --- --- --- --- 021587 00000 ------------ G 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 021689 00000 ------------ C 0.89 1.00 0.95 G 0.11 0.00 0.05 0000 --- --- --- --- 021766 00000 ------------ G 0.97 1.00 0.99 C 0.03 0.00 0.01 0000 --- --- --- --- 021797 00000 ------------ T 1.00 0.98 0.99 C 0.00 0.02 0.01 0000 --- --- --- --- 021918 00000 ------------ A 0.92 1.00 0.96 G 0.08 0.00 0.04 0000 --- --- --- --- 022475 00000 ------------ T 0.65 1.00 0.82 C 0.35 0.00 0.18 0000 --- --- --- --- 023099 00000 ------------ C 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 023135 00000 ------------ A 0.90 1.00 0.95 T 0.10 0.00 0.05 0000 --- --- --- --- 023505 00000 ------------ T 0.90 1.00 0.95 C 0.10 0.00 0.05 0000 --- --- --- --- 023647 00000 ------------ C 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 023689 00000 ------------ T 0.90 1.00 0.95 A 0.10 0.00 0.05 0000 --- --- --- --- 024062 00000 ------------ G 0.89 1.00 0.95 A 0.11 0.00 0.05 0000 --- --- --- --- 024743 00000 ------------ T 0.88 1.00 0.94 C 0.12 0.00 0.06 0000 --- --- --- --- 024966 00000 ------------ A 0.89 1.00 0.95 G 0.11 0.00 0.05 0000 --- --- --- --- 025077 00000 ------------ G 0.91 1.00 0.95 A 0.09 0.00 0.05 0000 --- --- --- --- 025211 00000 ------------ G 0.80 0.97 0.88 A 0.20 0.03 0.12 0000 --- --- --- --- 025363 00000 ------------ G 0.97 0.97 0.97 A 0.03 0.03 0.03 0000 --- --- --- --- 026320 00000 ------------ T 1.00 0.98 0.99 C 0.00 0.02 0.01 0000 --- --- --- --- 026576 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 026691 00000 ------------ A 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 026725 00000 ------------ C 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 026936 00000 ------------ T 0.89 1.00 0.95 C 0.11 0.00 0.05 0000 --- --- --- --- 027403 00000 ------------ A 0.91 1.00 0.95 G 0.09 0.00 0.05 0000 --- --- --- --- 027779 00000 ------------ G 0.92 1.00 0.95 A 0.08 0.00 0.05 0000 --- --- --- --- 027798 00000 ------------ C 0.97 1.00 0.98 T 0.03 0.00 0.02 0000 --- --- --- --- 027969 00000 ------------ A 0.93 1.00 0.97 G 0.07 0.00 0.03 0000 --- --- --- --- 028054 00000 ------------ A 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 028395 00000 ------------ G 0.70 1.00 0.86 A 0.30 0.00 0.14 0000 --- --- --- --- 028717 00000 ------------ T 0.71 1.00 0.85 G 0.29 0.00 0.15 0000 --- --- --- --- 029163 00000 ------------ G 0.89 1.00 0.94 A 0.11 0.00 0.06 0000 --- --- --- --- 029366 00000 ------------ C 0.91 1.00 0.95 T 0.09 0.00 0.05 0000 --- --- --- --- 029585 00000 ------------ C 0.90 1.00 0.95 A 0.10 0.00 0.05 0000 --- --- --- --- 030104 00000 ------------ G 0.88 1.00 0.94 A 0.12 0.00 0.06 0000 --- --- --- --- 030252 00000 ------------ C 0.95 1.00 0.98 A 0.05 0.00 0.02 0000 --- --- --- --- 030451 00000 ------------ G 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 030542 00000 ------------ A 0.88 1.00 0.94 G 0.12 0.00 0.06 0000 --- --- --- --- 030555 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 030799 00000 ------------ T 0.91 1.00 0.95 C 0.09 0.00 0.05 0000 --- --- --- --- 030895 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 031002 00000 ------------ - 0.09 0.00 0.05 + 0.91 1.00 0.95 0000 --- --- --- --- 031062 00000 ------------ A 0.95 1.00 0.98 G 0.05 0.00 0.02 0000 --- --- --- --- 031208 00000 ------------ T 0.70 1.00 0.85 C 0.30 0.00 0.15 0000 --- --- --- --- 031248 00000 ------------ A 0.80 1.00 0.90 G 0.20 0.00 0.10 0000 --- --- --- --- 031322 00902 SYNON A 0.91 1.00 0.96 C 0.09 0.00 0.04 0235 AGA CGA ARG(R) ARG(R) 031408 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 031648 00000 ------------ A 0.89 1.00 0.94 G 0.11 0.00 0.06 0000 --- --- --- --- 031725 00000 ------------ T 0.89 1.00 0.94 A 0.11 0.00 0.06 0000 --- --- --- --- 032479 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 032744 01002 NON-SYN C 0.90 1.00 0.94 T 0.10 0.00 0.06 0268 ACG ATG THR(T) MET(M) 033291 00000 ------------ C 0.91 1.00 0.96 T 0.09 0.00 0.04 0000 --- --- --- --- 033328 00000 ------------ G 0.82 1.00 0.91 A 0.18 0.00 0.09 0000 --- --- --- --- 033379 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 033617 00000 ------------ T 0.95 1.00 0.98 C 0.05 0.00 0.02 0000 --- --- --- --- 033630 00000 ------------ T 0.75 1.00 0.88 G 0.25 0.00 0.12 0000 --- --- --- --- 034036 00000 ------------ C 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 034426 00000 ------------ A 0.91 1.00 0.96 C 0.09 0.00 0.04 0000 --- --- --- --- 034434 00000 ------------ A 0.90 1.00 0.95 G 0.10 0.00 0.05 0000 --- --- --- --- 034589 00000 ------------ T 0.71 1.00 0.85 C 0.29 0.00 0.15 0000 --- --- --- --- 034607 00000 ------------ G 0.92 1.00 0.96 T 0.08 0.00 0.04 0000 --- --- --- --- 034608 00000 ------------ C 0.92 1.00 0.96 T 0.08 0.00 0.04 0000 --- --- --- --- 035725 00000 ------------ T 0.92 1.00 0.96 C 0.08 0.00 0.04 0000 --- --- --- --- 035730* 036245 00000 ------------ C 1.00 0.95 0.98 T 0.00 0.05 0.02 0000 --- --- --- --- 036262 00000 ------------ G 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 036859 00000 ------------ A 0.89 1.00 0.95 G 0.11 0.00 0.05 0000 --- --- --- --- 036870 00000 ------------ T 0.89 1.00 0.95 G 0.11 0.00 0.05 0000 --- --- --- --- 037085 00000 ------------ A 0.97 1.00 0.99 T 0.03 0.00 0.01 0000 --- --- --- --- 037093 00000 ------------ C 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 037311 00000 ------------ G 0.93 1.00 0.96 T 0.07 0.00 0.04 0000 --- --- --- --- 037319 00000 ------------ A 0.89 0.97 0.93 G 0.11 0.03 0.07 0000 --- --- --- --- 037825 00000 ------------ G 0.95 1.00 0.97 T 0.05 0.00 0.03 0000 --- --- --- --- 038154* 038473 01330 3' UTR A 1.00 0.96 0.98 G 0.00 0.04 0.02 0000 --- --- --- --- 038582 01439 3' UTR C 0.76 0.98 0.88 T 0.24 0.02 0.12 0000 --- --- --- --- 038612 01469 3' UTR T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 038742 01599 3' UTR C 0.94 1.00 0.97 T 0.06 0.00 0.03 0000 --- --- --- --- 039263 00000 ------------ G 0.81 1.00 0.90 A 0.19 0.00 0.10 0000 --- --- --- --- NOTE: AD-freq: African Descent frequency ED-freq: European Descent frequency NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 001909: A 004405: T 005427: CAAAATAATTGTGGTAGGAT 006398: TCT 011648: CTTTGTAGACT 012146: A 012504: A 015430: ATTA 031002: TCT The following site(s) was observed to have three alleles. The frequency for each allele is given below: Site Allele1 AD-freq ED-freq Total-freq Allele2 AD-freq ED-freq Total-freq Allele3 AD-freq ED-freq Total-freq 035730 A 0.69 1.00 0.84 G 0.29 0.00 0.15 T 0.02 0.00 0.01 038154 A 0.65 0.96 0.80 G 0.33 0.00 0.16 T 0.02 0.04 0.03