Site CDNA-Pos Description Allele1 AD-freq ED-freq Total-freq Allele2 AD-freq ED-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 002049 00000 ------------ C 0.95 0.78 0.87 T 0.05 0.22 0.13 0000 --- --- --- --- 002124 00000 ------------ - 0.18 0.22 0.20 + 0.82 0.78 0.80 0000 --- --- --- --- 002333 00000 ------------ A 0.67 0.57 0.62 G 0.33 0.43 0.38 0000 --- --- --- --- 002462 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 002522 00004 5' UTR - 0.83 1.00 0.91 + 0.17 0.00 0.09 0000 --- --- --- --- 002568 00050 5' UTR C 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 002879 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 003082 00000 ------------ G 0.57 0.64 0.60 T 0.43 0.36 0.40 0000 --- --- --- --- 003436 00402 NON-SYN G 0.98 1.00 0.99 T 0.02 0.00 0.01 0052 CGT CTT ARG(R) LEU(L) 003685 00000 ------------ - 0.98 0.98 0.98 + 0.02 0.02 0.02 0000 --- --- --- --- 003739 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 003782 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 003786 00000 ------------ C 0.84 0.61 0.73 T 0.16 0.39 0.27 0000 --- --- --- --- 004007 00000 ------------ A 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 004141 00000 ------------ A 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 004256 00000 ------------ G 0.85 1.00 0.92 T 0.15 0.00 0.08 0000 --- --- --- --- 004348 00000 ------------ G 0.94 1.00 0.97 A 0.06 0.00 0.03 0000 --- --- --- --- 004367 00000 ------------ A 0.94 0.98 0.96 G 0.06 0.02 0.04 0000 --- --- --- --- 004402 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 004553 00000 ------------ G 0.83 0.61 0.73 T 0.17 0.39 0.27 0000 --- --- --- --- 004646 00000 ------------ T 0.95 1.00 0.98 C 0.05 0.00 0.02 0000 --- --- --- --- 004656 00000 ------------ G 0.92 0.78 0.85 T 0.08 0.22 0.15 0000 --- --- --- --- 004731 00000 ------------ C 0.97 1.00 0.99 G 0.03 0.00 0.01 0000 --- --- --- --- 004964 00000 ------------ A 0.97 1.00 0.99 G 0.03 0.00 0.01 0000 --- --- --- --- 005468 00000 ------------ A 0.95 0.98 0.97 G 0.05 0.02 0.03 0000 --- --- --- --- 005487 00000 ------------ A 0.97 1.00 0.99 G 0.03 0.00 0.01 0000 --- --- --- --- 005568 00541 SYNON C 0.97 1.00 0.99 T 0.03 0.00 0.01 0098 TGC TGT CYS(C) CYS(C) 006456 00000 ------------ G 0.92 1.00 0.96 A 0.08 0.00 0.04 0000 --- --- --- --- 006932 00000 ------------ C 1.00 0.91 0.96 G 0.00 0.09 0.04 0000 --- --- --- --- 007024 00000 ------------ - 0.04 0.22 0.13 + 0.96 0.78 0.87 0000 --- --- --- --- 007038 00000 ------------ T 1.00 0.97 0.99 A 0.00 0.03 0.01 0000 --- --- --- --- 007460 00000 ------------ - 0.98 1.00 0.99 + 0.02 0.00 0.01 0000 --- --- --- --- 007699 00000 ------------ G 1.00 0.97 0.99 A 0.00 0.03 0.01 0000 --- --- --- --- 007960 00000 ------------ T 0.75 0.76 0.76 C 0.25 0.24 0.24 0000 --- --- --- --- 008835 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 008878 00000 ------------ A 0.75 0.71 0.73 T 0.25 0.29 0.27 0000 --- --- --- --- 009182 00000 ------------ T 0.98 0.95 0.96 G 0.02 0.05 0.04 0000 --- --- --- --- 009194 00000 ------------ C 0.66 0.64 0.65 T 0.34 0.36 0.35 0000 --- --- --- --- 009533 00000 ------------ C 0.66 0.64 0.65 G 0.34 0.36 0.35 0000 --- --- --- --- 009539 00000 ------------ C 0.73 0.77 0.75 T 0.27 0.23 0.25 0000 --- --- --- --- 010014 00000 ------------ C 0.75 0.75 0.75 T 0.25 0.25 0.25 0000 --- --- --- --- 010039 00000 ------------ G 0.75 0.75 0.75 T 0.25 0.25 0.25 0000 --- --- --- --- 010201 00000 ------------ C 0.75 0.75 0.75 A 0.25 0.25 0.25 0000 --- --- --- --- 010451 00000 ------------ A 0.98 0.93 0.95 G 0.02 0.07 0.05 0000 --- --- --- --- 010558 00000 ------------ T 0.76 0.78 0.77 C 0.24 0.23 0.23 0000 --- --- --- --- 010744 00000 ------------ C 0.93 1.00 0.96 T 0.07 0.00 0.04 0000 --- --- --- --- 010804 00000 ------------ T 1.00 0.97 0.99 C 0.00 0.03 0.01 0000 --- --- --- --- 010875 00000 ------------ G 0.75 0.80 0.77 C 0.25 0.20 0.23 0000 --- --- --- --- 011005 00000 ------------ C 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 011019 00000 ------------ C 0.93 1.00 0.96 A 0.07 0.00 0.04 0000 --- --- --- --- 011053 00000 ------------ - 0.25 0.20 0.23 + 0.75 0.80 0.77 0000 --- --- --- --- 011100 00000 ------------ A 0.76 0.80 0.78 G 0.24 0.20 0.22 0000 --- --- --- --- 011389 00000 ------------ G 1.00 0.80 0.89 A 0.00 0.20 0.11 0000 --- --- --- --- 011650 00000 ------------ C 0.97 1.00 0.99 T 0.03 0.00 0.01 0000 --- --- --- --- 011714 00000 ------------ C 0.97 1.00 0.99 T 0.03 0.00 0.01 0000 --- --- --- --- 011865 00000 ------------ C 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 012337 00000 ------------ A 0.75 0.76 0.76 G 0.25 0.24 0.24 0000 --- --- --- --- 012416 00000 ------------ A 0.78 0.78 0.78 C 0.23 0.23 0.23 0000 --- --- --- --- 012489 00000 ------------ - 0.78 0.72 0.75 + 0.23 0.28 0.25 0000 --- --- --- --- 012806 00000 ------------ C 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 012942 00000 ------------ C 0.70 0.53 0.62 T 0.30 0.47 0.38 0000 --- --- --- --- 013172 00000 ------------ T 0.91 1.00 0.95 G 0.09 0.00 0.05 0000 --- --- --- --- 013377 00000 ------------ G 0.74 0.79 0.76 A 0.26 0.21 0.24 0000 --- --- --- --- 013776 00000 ------------ T 0.93 1.00 0.96 C 0.07 0.00 0.04 0000 --- --- --- --- 013997 00000 ------------ G 0.75 0.83 0.79 T 0.25 0.17 0.21 0000 --- --- --- --- 014246 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 014274 00000 ------------ A 0.73 0.83 0.78 G 0.27 0.17 0.22 0000 --- --- --- --- 014317 00000 ------------ T 0.73 0.83 0.78 C 0.27 0.17 0.22 0000 --- --- --- --- 015259 00000 ------------ G 0.90 1.00 0.95 T 0.10 0.00 0.05 0000 --- --- --- --- 015296 00000 ------------ A 0.73 0.78 0.76 G 0.27 0.22 0.24 0000 --- --- --- --- 015702 00000 ------------ C 0.92 1.00 0.96 T 0.08 0.00 0.04 0000 --- --- --- --- 015767 00000 ------------ - 0.27 0.22 0.24 + 0.73 0.78 0.76 0000 --- --- --- --- 015921 00000 ------------ - 0.73 0.78 0.76 + 0.27 0.22 0.24 0000 --- --- --- --- 016033 00000 ------------ G 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 016162 00000 ------------ A 0.83 0.80 0.82 G 0.17 0.20 0.18 0000 --- --- --- --- 016198 00000 ------------ - 0.27 0.45 0.36 + 0.73 0.55 0.64 0000 --- --- --- --- 016350 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 016400 00000 ------------ G 0.73 0.80 0.76 A 0.27 0.20 0.24 0000 --- --- --- --- 016407 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 016470 00000 ------------ G 0.94 1.00 0.97 A 0.06 0.00 0.03 0000 --- --- --- --- 016620 00000 ------------ T 0.73 0.80 0.76 A 0.27 0.20 0.24 0000 --- --- --- --- 016692 00000 ------------ G 0.65 0.66 0.65 A 0.35 0.34 0.35 0000 --- --- --- --- 016938 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 016957 00000 ------------ G 1.00 0.93 0.97 A 0.00 0.07 0.03 0000 --- --- --- --- 017035 00000 ------------ T 0.73 0.82 0.77 C 0.27 0.18 0.23 0000 --- --- --- --- 017178 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 017257 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 017469 00000 ------------ C 0.83 0.82 0.83 T 0.17 0.18 0.17 0000 --- --- --- --- 017533 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 017607 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 018185 00000 ------------ C 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 018218 00000 ------------ G 0.73 0.80 0.76 A 0.27 0.20 0.24 0000 --- --- --- --- 018266 00000 ------------ A 0.73 0.78 0.76 G 0.27 0.22 0.24 0000 --- --- --- --- 018530 00000 ------------ G 0.95 1.00 0.97 A 0.05 0.00 0.03 0000 --- --- --- --- 018943 00000 ------------ C 0.97 1.00 0.99 T 0.03 0.00 0.01 0000 --- --- --- --- 020407 00000 ------------ G 0.93 0.98 0.96 A 0.07 0.02 0.04 0000 --- --- --- --- 020710* 020891 00000 ------------ G 0.78 0.79 0.78 A 0.22 0.21 0.22 0000 --- --- --- --- 021622 00000 ------------ G 0.90 1.00 0.95 A 0.10 0.00 0.05 0000 --- --- --- --- 021860 00000 ------------ T 0.96 0.97 0.97 C 0.04 0.03 0.03 0000 --- --- --- --- 021897 00000 ------------ C 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 021956 00000 ------------ C 1.00 0.90 0.95 T 0.00 0.10 0.05 0000 --- --- --- --- 022018 00000 ------------ A 0.83 0.54 0.68 C 0.17 0.46 0.32 0000 --- --- --- --- 022900 00000 ------------ G 0.89 1.00 0.95 A 0.11 0.00 0.05 0000 --- --- --- --- 023059 00000 ------------ - 0.02 0.00 0.01 + 0.98 1.00 0.99 0000 --- --- --- --- 023429 00000 ------------ C 0.73 0.57 0.65 A 0.27 0.43 0.35 0000 --- --- --- --- 023445 00000 ------------ A 0.90 0.98 0.93 C 0.10 0.02 0.07 0000 --- --- --- --- 023818 00000 ------------ G 0.97 1.00 0.99 A 0.03 0.00 0.01 0000 --- --- --- --- 024033 00000 ------------ T 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 024034 00000 ------------ A 0.83 0.78 0.81 G 0.17 0.22 0.19 0000 --- --- --- --- 024051 00000 ------------ T 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 024172 00000 ------------ T 0.96 0.78 0.87 C 0.04 0.22 0.13 0000 --- --- --- --- 025029 00000 ------------ G 0.91 0.97 0.94 C 0.09 0.03 0.06 0000 --- --- --- --- 025302 00000 ------------ - 0.02 0.00 0.01 + 0.98 1.00 0.99 0000 --- --- --- --- 025369 00000 ------------ A 0.90 0.76 0.83 T 0.10 0.24 0.17 0000 --- --- --- --- 025475 00000 ------------ G 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 026671 00000 ------------ G 0.89 0.95 0.92 A 0.11 0.05 0.08 0000 --- --- --- --- 026810 00000 ------------ G 0.74 0.79 0.76 A 0.26 0.21 0.24 0000 --- --- --- --- 027063 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 027093 00000 ------------ G 0.90 1.00 0.95 A 0.10 0.00 0.05 0000 --- --- --- --- 027195 00000 ------------ G 0.96 0.78 0.87 A 0.04 0.22 0.13 0000 --- --- --- --- 027196 00000 ------------ G 0.73 0.78 0.76 T 0.27 0.22 0.24 0000 --- --- --- --- 027753 00000 ------------ A 0.91 1.00 0.96 T 0.09 0.00 0.04 0000 --- --- --- --- 028049 00000 ------------ T 0.85 0.61 0.73 C 0.15 0.39 0.27 0000 --- --- --- --- 028338 00000 ------------ C 0.89 1.00 0.94 T 0.11 0.00 0.06 0000 --- --- --- --- 028426 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 028461 00000 ------------ G 0.96 0.77 0.87 A 0.04 0.23 0.13 0000 --- --- --- --- 028975 00000 ------------ C 0.93 1.00 0.97 G 0.07 0.00 0.03 0000 --- --- --- --- 029107 00000 ------------ C 0.68 0.66 0.67 T 0.32 0.34 0.33 0000 --- --- --- --- 029179 00000 ------------ G 0.95 1.00 0.98 A 0.05 0.00 0.02 0000 --- --- --- --- 029252 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 030700 00000 ------------ G 0.95 0.98 0.97 A 0.05 0.02 0.03 0000 --- --- --- --- 030809 00000 ------------ A 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 030941 00000 ------------ C 0.89 1.00 0.94 G 0.11 0.00 0.06 0000 --- --- --- --- 031167 00000 ------------ T 1.00 0.93 0.97 G 0.00 0.07 0.03 0000 --- --- --- --- 031357 00000 ------------ - 0.02 0.00 0.01 + 0.98 1.00 0.99 0000 --- --- --- --- 031525 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 031865 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 032169 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 032214 00000 ------------ T 0.81 1.00 0.90 C 0.19 0.00 0.10 0000 --- --- --- --- 033043 00000 ------------ G 0.73 0.57 0.65 A 0.27 0.43 0.35 0000 --- --- --- --- 033229 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 033371 00000 ------------ G 0.90 1.00 0.95 A 0.10 0.00 0.05 0000 --- --- --- --- 033664 00000 ------------ G 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 033687 00000 ------------ G 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 034266 00000 ------------ G 0.86 0.76 0.81 A 0.14 0.24 0.19 0000 --- --- --- --- 034418 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 034688 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 034727 00000 ------------ - 0.02 0.00 0.01 + 0.98 1.00 0.99 0000 --- --- --- --- 034958 00000 ------------ G 0.72 0.57 0.64 A 0.28 0.43 0.36 0000 --- --- --- --- 035714 00000 ------------ A 0.88 1.00 0.94 G 0.12 0.00 0.06 0000 --- --- --- --- 035901 00000 ------------ G 0.93 1.00 0.97 A 0.07 0.00 0.03 0000 --- --- --- --- 036132 00000 ------------ A 0.94 1.00 0.97 G 0.06 0.00 0.03 0000 --- --- --- --- 036134 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 036140 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 036241 00000 ------------ A 0.90 1.00 0.95 G 0.10 0.00 0.05 0000 --- --- --- --- 036412 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 036695 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 036900 00000 ------------ C 0.74 0.57 0.65 T 0.26 0.43 0.35 0000 --- --- --- --- 037249 00000 ------------ T 0.73 0.57 0.65 G 0.27 0.43 0.35 0000 --- --- --- --- 037401 00000 ------------ C 0.92 1.00 0.96 G 0.08 0.00 0.04 0000 --- --- --- --- 038451 00000 ------------ C 0.94 1.00 0.97 T 0.06 0.00 0.03 0000 --- --- --- --- 038491 00000 ------------ - 0.98 1.00 0.99 + 0.02 0.00 0.01 0000 --- --- --- --- 038496 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 038600 00000 ------------ C 1.00 0.96 0.98 T 0.00 0.04 0.02 0000 --- --- --- --- 038713 00000 ------------ T 1.00 0.98 0.99 C 0.00 0.02 0.01 0000 --- --- --- --- 038879 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 038950 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 039720 00000 ------------ A 0.96 0.98 0.97 T 0.04 0.02 0.03 0000 --- --- --- --- 039959 00000 ------------ G 1.00 0.96 0.98 A 0.00 0.04 0.02 0000 --- --- --- --- 040091 00000 ------------ T 1.00 0.98 0.99 C 0.00 0.02 0.01 0000 --- --- --- --- 040720 01484 3' UTR A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 040829 01593 3' UTR A 1.00 0.93 0.97 C 0.00 0.07 0.03 0000 --- --- --- --- 041043 01807 3' UTR A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 041132 01896 3' UTR G 0.93 1.00 0.97 A 0.07 0.00 0.03 0000 --- --- --- --- 041597 00000 ------------ C 0.93 1.00 0.97 A 0.07 0.00 0.03 0000 --- --- --- --- 041937 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 042135 00000 ------------ C 0.98 0.98 0.98 T 0.02 0.02 0.02 0000 --- --- --- --- 042353 00000 ------------ G 0.71 0.39 0.55 A 0.29 0.61 0.45 0000 --- --- --- --- NOTE: AD-freq: African Descent frequency ED-freq: European Descent frequency NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 002124: CTTCCCCTCCTTCCCTAGTTA 002522: A 003685: TA 007024: AATT 007460: TATAAA 011053: C 012489: CA 015767: AA 015921: TCTTTAC 016198: TAGTT 023059: T 025302: TTTCT 031357: TT 034727: AA 038491: TA The following site(s) was observed to have three alleles. The frequency for each allele is given below: Site Allele1 AD-freq ED-freq Total-freq Allele2 AD-freq ED-freq Total-freq Allele3 AD-freq ED-freq Total-freq 020710 A 0.10 0.00 0.05 C 0.83 1.00 0.91 T 0.06 0.00 0.03