Site CDNA-Pos Description Allele1 AD-freq ED-freq Total-freq Allele2 AD-freq ED-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 000201 00000 ------------ T 0.70 0.60 0.63 C 0.30 0.40 0.37 0000 --- --- --- --- 000527 00000 ------------ T 0.97 1.00 0.99 C 0.03 0.00 0.01 0000 --- --- --- --- 000771 00000 ------------ A 0.93 1.00 0.97 G 0.07 0.00 0.03 0000 --- --- --- --- 001087 00000 ------------ A 0.83 1.00 0.91 G 0.17 0.00 0.09 0000 --- --- --- --- 001088 00000 ------------ T 0.83 1.00 0.91 G 0.17 0.00 0.09 0000 --- --- --- --- 001407 00000 ------------ A 0.90 0.89 0.89 T 0.10 0.11 0.11 0000 --- --- --- --- 001487 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 001626 00000 ------------ T 0.69 0.89 0.79 C 0.31 0.11 0.21 0000 --- --- --- --- 001722 00000 ------------ T 0.71 0.50 0.60 C 0.29 0.50 0.40 0000 --- --- --- --- 001880 00000 ------------ C 0.80 0.91 0.85 A 0.20 0.09 0.15 0000 --- --- --- --- 001881 00000 ------------ C 0.80 0.91 0.85 T 0.20 0.09 0.15 0000 --- --- --- --- 001887 00000 ------------ C 0.91 0.89 0.90 A 0.09 0.11 0.10 0000 --- --- --- --- 002151 00022 5' UTR G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 002153 00024 5' UTR C 0.95 1.00 0.98 T 0.05 0.00 0.02 0000 --- --- --- --- 002192 00000 ------------ G 0.90 1.00 0.95 T 0.10 0.00 0.05 0000 --- --- --- --- 002212 00000 ------------ - 0.10 0.00 0.05 + 0.90 1.00 0.95 0000 --- --- --- --- 002324 00000 ------------ - 0.08 0.50 0.32 + 0.92 0.50 0.68 0000 --- --- --- --- 002507 00000 ------------ T 0.68 0.91 0.80 C 0.32 0.09 0.20 0000 --- --- --- --- 002521 00000 ------------ T 0.95 1.00 0.98 C 0.05 0.00 0.02 0000 --- --- --- --- 002550 00000 ------------ G 0.79 0.91 0.85 C 0.21 0.09 0.15 0000 --- --- --- --- 002555 00000 ------------ C 0.94 1.00 0.97 T 0.06 0.00 0.03 0000 --- --- --- --- 002575 00000 ------------ G 0.94 1.00 0.97 A 0.06 0.00 0.03 0000 --- --- --- --- 002585 00000 ------------ T 0.88 0.89 0.88 C 0.12 0.11 0.12 0000 --- --- --- --- 002617 00070 NON-SYN C 0.98 1.00 0.99 A 0.02 0.00 0.01 0007 TCC TAC SER(S) TYR(Y) 002631 00084 NON-SYN T 0.79 0.89 0.84 G 0.21 0.11 0.16 0012 TGG GGG TRP(W) GLY(G) 002762 00215 SYNON A 0.72 0.89 0.80 G 0.28 0.11 0.20 0055 CCA CCG PRO(P) PRO(P) 002920 00000 ------------ A 0.87 0.90 0.89 G 0.13 0.10 0.11 0000 --- --- --- --- 002984 00000 ------------ T 0.93 1.00 0.97 A 0.07 0.00 0.03 0000 --- --- --- --- 003115 00000 ------------ A 0.93 1.00 0.97 G 0.07 0.00 0.03 0000 --- --- --- --- 003197 00000 ------------ G 0.93 1.00 0.97 A 0.07 0.00 0.03 0000 --- --- --- --- 003235 00000 ------------ T 0.80 0.89 0.85 C 0.20 0.11 0.15 0000 --- --- --- --- 003249 00000 ------------ C 0.91 1.00 0.96 T 0.09 0.00 0.04 0000 --- --- --- --- 004416 00000 ------------ A 0.86 0.89 0.87 G 0.14 0.11 0.13 0000 --- --- --- --- 004482 00000 ------------ A 0.88 1.00 0.94 G 0.12 0.00 0.06 0000 --- --- --- --- 004614 00296 SYNON C 0.86 0.89 0.87 T 0.14 0.11 0.13 0082 GCC GCT ALA(A) ALA(A) 005412 00000 ------------ T 0.85 0.89 0.87 A 0.15 0.11 0.13 0000 --- --- --- --- 005453 00000 ------------ G 0.85 0.89 0.87 A 0.15 0.11 0.13 0000 --- --- --- --- 005503 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 005506 00000 ------------ C 0.94 0.96 0.95 A 0.06 0.04 0.05 0000 --- --- --- --- 005624 00000 ------------ G 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 005679 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 005727 00000 ------------ T 0.85 1.00 0.92 C 0.15 0.00 0.08 0000 --- --- --- --- 005731 00000 ------------ G 0.85 0.89 0.87 A 0.15 0.11 0.13 0000 --- --- --- --- 005750 00000 ------------ C 0.85 0.89 0.87 A 0.15 0.11 0.13 0000 --- --- --- --- 005751 00000 ------------ C 0.85 0.89 0.87 G 0.15 0.11 0.13 0000 --- --- --- --- 005785 00000 ------------ G 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 005795 00000 ------------ T 0.85 0.89 0.87 C 0.15 0.11 0.13 0000 --- --- --- --- 005831 00000 ------------ A 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 005842 00000 ------------ A 0.98 0.89 0.94 G 0.02 0.11 0.06 0000 --- --- --- --- 005867 00000 ------------ A 0.90 1.00 0.95 G 0.10 0.00 0.05 0000 --- --- --- --- 005904 00000 ------------ G 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 005923 00000 ------------ G 0.83 0.91 0.87 A 0.17 0.09 0.13 0000 --- --- --- --- 006008 00000 ------------ A 0.82 0.89 0.85 G 0.18 0.11 0.15 0000 --- --- --- --- 006024 00000 ------------ G 0.77 0.89 0.83 A 0.23 0.11 0.17 0000 --- --- --- --- 006047 00000 ------------ G 0.93 1.00 0.97 A 0.07 0.00 0.03 0000 --- --- --- --- 006227 00000 ------------ G 0.85 0.89 0.87 T 0.15 0.11 0.13 0000 --- --- --- --- 006262 00000 ------------ G 0.90 1.00 0.95 C 0.10 0.00 0.05 0000 --- --- --- --- 006489 00000 ------------ T 0.83 0.75 0.79 C 0.17 0.25 0.21 0000 --- --- --- --- 006545 00000 ------------ C 0.91 1.00 0.96 T 0.09 0.00 0.04 0000 --- --- --- --- 006598 00000 ------------ C 0.97 1.00 0.99 T 0.03 0.00 0.01 0000 --- --- --- --- 006631 00000 ------------ G 0.70 0.89 0.80 C 0.30 0.11 0.20 0000 --- --- --- --- 006656 00000 ------------ T 0.84 0.89 0.87 A 0.16 0.11 0.13 0000 --- --- --- --- 007639 00398 SYNON C 0.98 1.00 0.99 G 0.02 0.00 0.01 0116 GCC GCG ALA(A) ALA(A) 008104 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 008207 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 008371 00000 ------------ C 0.94 1.00 0.97 G 0.06 0.00 0.03 0000 --- --- --- --- 008425 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 008490 00000 ------------ G 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 008506 00000 ------------ C 0.83 1.00 0.91 T 0.17 0.00 0.09 0000 --- --- --- --- 008523 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 008665 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 008730 00000 ------------ G 0.83 0.90 0.86 A 0.17 0.10 0.14 0000 --- --- --- --- 009175 00000 ------------ A 0.44 0.61 0.52 C 0.56 0.39 0.48 0000 --- --- --- --- 009217 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 009237 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 009287 00000 ------------ T 0.44 0.61 0.52 C 0.56 0.39 0.48 0000 --- --- --- --- 009293 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 009398 00000 ------------ C 0.98 0.95 0.97 T 0.02 0.05 0.03 0000 --- --- --- --- 009428 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 009549 00000 ------------ - 0.02 0.00 0.01 + 0.98 1.00 0.99 0000 --- --- --- --- 009638 00000 ------------ C 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 009643 00000 ------------ T 1.00 0.96 0.98 G 0.00 0.04 0.02 0000 --- --- --- --- 009812 00604 NON-SYN G 0.98 0.96 0.97 T 0.02 0.04 0.03 0185 GGT GTT GLY(G) VAL(V) 009986 00000 ------------ - 0.05 0.00 0.02 + 0.95 1.00 0.98 0000 --- --- --- --- 010003 00000 ------------ - 0.02 0.00 0.01 + 0.98 1.00 0.99 0000 --- --- --- --- 010418 00000 ------------ A 0.59 0.39 0.50 T 0.41 0.61 0.50 0000 --- --- --- --- 010517 00000 ------------ C 1.00 0.97 0.99 A 0.00 0.03 0.01 0000 --- --- --- --- 010707 00881 SYNON T 0.97 1.00 0.99 C 0.03 0.00 0.01 0277 ACT ACC THR(T) THR(T) 010861 00000 ------------ A 0.69 0.71 0.70 G 0.31 0.29 0.30 0000 --- --- --- --- 013891 00000 ------------ - 0.61 0.36 0.48 + 0.39 0.64 0.52 0000 --- --- --- --- 014121 00000 ------------ G 0.95 0.89 0.92 A 0.05 0.11 0.08 0000 --- --- --- --- 014208 01079 SYNON C 0.76 0.52 0.64 T 0.24 0.48 0.36 0343 CAC CAT HIS(H) HIS(H) 014304 00000 ------------ G 0.93 1.00 0.97 A 0.07 0.00 0.03 0000 --- --- --- --- 014348 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 014443 00000 ------------ C 1.00 0.96 0.98 A 0.00 0.04 0.02 0000 --- --- --- --- 014531 00000 ------------ G 0.89 1.00 0.94 A 0.11 0.00 0.06 0000 --- --- --- --- 014546* 014596 00000 ------------ A 0.97 1.00 0.99 G 0.03 0.00 0.01 0000 --- --- --- --- 014680 00000 ------------ A 0.81 0.75 0.78 T 0.19 0.25 0.22 0000 --- --- --- --- 014737 00000 ------------ T 0.90 0.89 0.89 C 0.10 0.11 0.11 0000 --- --- --- --- 014784 00000 ------------ C 0.71 0.72 0.71 T 0.29 0.28 0.29 0000 --- --- --- --- 015021* 015055 00000 ------------ T 0.44 0.61 0.52 G 0.56 0.39 0.48 0000 --- --- --- --- 015101 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 015127 00000 ------------ A 1.00 0.96 0.98 G 0.00 0.04 0.02 0000 --- --- --- --- 015180 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 015241 00000 ------------ G 0.91 0.90 0.91 A 0.09 0.10 0.09 0000 --- --- --- --- 015275 00000 ------------ G 0.91 1.00 0.95 A 0.09 0.00 0.05 0000 --- --- --- --- 015581 00000 ------------ - 0.04 0.00 0.02 + 0.96 1.00 0.98 0000 --- --- --- --- 015620 00000 ------------ G 0.92 1.00 0.96 T 0.08 0.00 0.04 0000 --- --- --- --- 015734 00000 ------------ T 0.90 1.00 0.95 A 0.10 0.00 0.05 0000 --- --- --- --- 015790 00000 ------------ A 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 015793 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 015881 00000 ------------ C 0.90 0.89 0.89 T 0.10 0.11 0.11 0000 --- --- --- --- 015996 00000 ------------ C 0.92 1.00 0.96 T 0.08 0.00 0.04 0000 --- --- --- --- 016105 00000 ------------ T 0.60 0.61 0.61 C 0.40 0.39 0.39 0000 --- --- --- --- 016283 00000 ------------ T 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 016299 00000 ------------ C 0.83 0.76 0.80 T 0.17 0.24 0.20 0000 --- --- --- --- 016358 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 016536 00000 ------------ A 0.92 1.00 0.96 G 0.08 0.00 0.04 0000 --- --- --- --- 016551 00000 ------------ A 0.98 0.93 0.96 T 0.02 0.07 0.04 0000 --- --- --- --- 016597 00000 ------------ G 0.92 1.00 0.96 A 0.08 0.00 0.04 0000 --- --- --- --- 017040 00000 ------------ T 1.00 0.95 0.98 C 0.00 0.05 0.02 0000 --- --- --- --- 017074 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 017429 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 017638 00000 ------------ - 0.83 0.76 0.80 + 0.17 0.24 0.20 0000 --- --- --- --- 018248 00000 ------------ G 1.00 0.93 0.97 A 0.00 0.07 0.03 0000 --- --- --- --- 018354 00000 ------------ A 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 018709 00000 ------------ C 0.90 1.00 0.94 T 0.10 0.00 0.06 0000 --- --- --- --- 019114 00000 ------------ G 0.85 0.80 0.82 C 0.15 0.20 0.18 0000 --- --- --- --- 019352 00000 ------------ G 0.77 0.52 0.64 A 0.23 0.48 0.36 0000 --- --- --- --- 019508 00000 ------------ G 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 019595 00000 ------------ G 0.71 0.59 0.65 A 0.29 0.41 0.35 0000 --- --- --- --- 020518 00000 ------------ C 0.93 1.00 0.96 A 0.07 0.00 0.04 0000 --- --- --- --- 020597 01347 NON-SYN G 0.91 0.83 0.87 A 0.09 0.17 0.13 0433 GTG ATG VAL(V) MET(M) 020900 00000 ------------ A 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 020980 00000 ------------ C 0.43 0.70 0.57 T 0.57 0.30 0.43 0000 --- --- --- --- 021157 00000 ------------ A 0.86 0.79 0.82 T 0.14 0.21 0.18 0000 --- --- --- --- 021439 01605 NON-SYN C 0.83 0.93 0.88 A 0.17 0.07 0.12 0519 CTG ATG LEU(L) MET(M) 021574 01740 3' UTR T 0.90 1.00 0.95 C 0.10 0.00 0.05 0000 --- --- --- --- 021623 01789 3' UTR G 0.70 0.52 0.61 A 0.30 0.48 0.39 0000 --- --- --- --- 021844 02010 3' UTR C 0.73 0.52 0.63 T 0.27 0.48 0.37 0000 --- --- --- --- 021861 02027 3' UTR G 0.85 0.93 0.89 A 0.15 0.07 0.11 0000 --- --- --- --- 021988 02154 3' UTR G 0.83 0.75 0.79 C 0.17 0.25 0.21 0000 --- --- --- --- 022274 00000 ------------ - 0.19 0.22 0.20 + 0.81 0.78 0.80 0000 --- --- --- --- 022370 00000 ------------ A 0.80 0.81 0.81 G 0.20 0.19 0.19 0000 --- --- --- --- 022446 00000 ------------ T 0.86 1.00 0.93 C 0.14 0.00 0.07 0000 --- --- --- --- 022608 00000 ------------ C 0.84 0.76 0.80 G 0.16 0.24 0.20 0000 --- --- --- --- 022627 00000 ------------ G 0.98 0.88 0.93 A 0.02 0.12 0.07 0000 --- --- --- --- 023061 00000 ------------ C 0.88 0.80 0.84 T 0.12 0.20 0.16 0000 --- --- --- --- 023062 00000 ------------ G 0.72 0.53 0.62 A 0.28 0.47 0.38 0000 --- --- --- --- 023087 00000 ------------ G 0.97 1.00 0.99 A 0.03 0.00 0.01 0000 --- --- --- --- 023091 00000 ------------ C 0.97 1.00 0.99 T 0.03 0.00 0.01 0000 --- --- --- --- 023123 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 023291 00000 ------------ T 0.86 0.79 0.82 C 0.14 0.21 0.18 0000 --- --- --- --- 023331 00000 ------------ A 0.95 1.00 0.98 G 0.05 0.00 0.02 0000 --- --- --- --- 023421 00000 ------------ C 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- NOTE: AD-freq: African Descent frequency ED-freq: European Descent frequency NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 002212: G 002324: CA 009549: AG 009986: A 010003: GGA 013891: G 014546: C 015581: A 017638: ATATATATTAGAGGTACAATGTGATGTTATGATGTATGTATACAACCTGAAATTATTAAATCAAGGTAATGAACAAATCCATCACTTCATATATTTATCATTTTTATGTTGAGAACAT 022274: AA The following site(s) was observed to have three alleles. The frequency for each allele is given below: Site Allele1 AD-freq ED-freq Total-freq Allele2 AD-freq ED-freq Total-freq Allele3 AD-freq ED-freq Total-freq 014546 - 0.18 0.24 0.21 C 0.75 0.76 0.76 T 0.07 0.00 0.03 015021 A 0.04 0.11 0.07 C 0.04 0.00 0.02 G 0.92 0.89 0.90