CSF2 Color FASTA
The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.
*Display courtesy of
GeneSNPs
GCAGTCTGTT TCCTACCAGA CTGGGAGCCT CAAGGGCCAA ATGTGAGGGC
50
CAGTGGGAGG GTCCCGTT
T
A CCTCCCCAGA ACAGGTCCTG GTGTGGATTG
100 |
var(69):[C:0.42]
GAAAGACTTG TTGACTGACT GTCTGAGCTA TGACAACTCA T
T
TCTAGGAG
150 |
var(142):[C:0.01]
GAAAGTGACC TTCTCTCCCA GATGGGTCAT ACAGGCTCTC TGCCTCCCTG
200
GCCATCAGCT GAACCACTAT CTATGGCTCC CTTCCCTGCC CTCCAGCCTC
250
CAGGGTGCTA TCCAACACAT GTGATATCTA CATGTAGTAT CCATGTCCTC
300
ATCTCTCCCC CGAGAGCTCC CTGGAAAGAG CTGAGCCAAG GCCTTGCAAA
350
AAAGGTGGAG AAAGGGCCAG GGCCTGGACA TTTCATGTTC CCACCCCAGC
400
CTGGCCACTA GGAGTGTTCT ACGCAGGCTC AGATGGATGG GGCTGGCCTC
450
ACAGTGGGGT CTGGAGGACT AAGGTTTGGT TTCTCTATGC AAGGTCAGAA
500
AAACTCCCAC AGTACAGGGA AACTGGCCAG GG
C
TGCAGAC TCAG
A
CCACA
550 |
var(533):[T:0.02]
|
var(545):[G:0.41]
GTGCTAAAGC CATGAACTCC ACCTGCTCTC TGAAGGCTCG CCAACCTGAG
600
TCCAGCAGAA TGTTCTCGCT TGTGTCCAAC CCCACTGGTT TAGGCTGAAT
650
CAGCCTCTAG GGCCCAGAGG CACTGCACCT GGAGTAGGGA GCTTCTCCAG
700
TATCAGAGTC ACCTTCAGAG GCCTGGAGCC TTTCATAAAG CAGGTAAGAG
750
GACTCAATAG ATGCATCTGC ATGGAAAACA TCCTCCCCTC TACCAGGCAC
800
CTGTATGTA
C
AACCAATCAC AGCAGCACAC ATACACCCAG AAATGGGCAC
850 |
var(810):[T:0.02]
GTGTGGGCCC ACACCCCTTT AGCTATGAAA CCCAGGCATG GGGCAGCTTG
900
AGCCAG
A
TAC CTTGTGCAAA CACAAACTC
G
TGCTGTCTTC TCTGAACTCC
950 |
var(907):[G:0.01]
|
var(930):[A:0.02]
ATTGTGAAAA TCAAACACTT GTCAGCCC
C
T CAAGAGCCTT TAGATTTCCT
1000 |
var(979):[T:0.01]
ACTTCCACA
C
TTCCACAGAA AGGCCTCTGG AGTTGGGGGA TGCTGGGGTT
1050 |
var(1010):[T:0.01]
ATGTAGGAAA TTAAGCCTGG AGGGC
C
TTGC TGGGGAAGCC ATTGTCCCTG
1100 |
var(1076):[G:0.02]
TACCTGAGAT GGATGCAGCC ACAGCCCTGG AGCCAGCCTG AAGCTCCTGG
1150
TGTCTTCTGG GGGCTACATA TAGGAGTGTA GTCCGAACCT CAGAGGGGCA
1200
AACCTGCTCT GCAGAGGGAA TCAAGGTTCA CATAACCAGA GAGGGGAGTC
1250
ACTCAGGAAG GTGGCTCCAG AGCCAAGAGT CAGACTCTGG GTCCCGACTT
1300
GACCCAGCC
A
CACCCCCTCT GAAGCTTGCT GAGAGTGGCT GCAGTCTCGC
1350 |
var(1310):[C:0.40]
TGCTGGATGT GCACATGGTG GTCATTCCCT CTGCTCACAG GGGCAGGGGT
1400
CCCCCCTTAC TGGACTGAGG TTGCCCCCTG CTCCAGGTCC TGGGTGGGAG
1450
CCCATGTGAA CTGTCAGTGG GGCAGGTCTG TGAGAGCTCC CCTCACACTC
1500
AAGTCTCTCA CAGTGGCCAG AGAAGAGGAA GGCTGGAGTC AGAATGAGGC
1550
ACCAGGGCGG GCATAGCCTG CCCAAAGGCC CCTGGGATTA CAGGCAGGAT
1600
GGGGAGCCCT ATCTAAGTGT CTCCCACGCC CCACCCCAGC CATTCCAGGC
1650
CAGGAAGTCC AAACTGTGCC CCTCAGAGGG AGGGGGCAGC CTCAGGCCCA
1700
TTCAGACTGC CCAGGGAGGG CTGGAGAGCC CTCAGGAAGG CGGGTGGGTG
1750
GGCTGTCGGT TCTTGGAAAG GTTCATTAAT GAAAACCCCC AAGCCTGACC
1800
ACCTAGGGAA AAGGCTCACC GTTCCCATGT GTGGCTGATA AGGGCCAGGA
1850
GATTCCACAG TTCAGGTAGT TCCCCCGCCT CCCTGGCATT TTGTGGTCAC
1900
CATTAATCAT TTCCTCTGTG TATTTAAGAG CTCTTTTGCC AGTGAGCCCA
1950
GTACACAGAG AGAAAGGCTA AAGTTC
T
C
T
G
G
A
G
G
A
T
G
T
G
G
C
T
G
C
A
G
A
G
C
C
2000 | Exon 1 |
UTR
M W L Q S 5
T
G
C
T
G
C
T
C
T
T
G
G
G
C
A
C
T
G
T
G
G
C
C
T
G
C
A
G
C
A
T
C
T
C
T
G
C
A
C
C
C
G
C
C
C
G
C
T
C
G
2050 |
var(2050):[A:0.02]
L L L L G T V A C S I S A P A R S 22
C
C
C
A
G
C
C
C
C
A
G
C
A
C
G
C
A
G
C
C
C
T
G
G
G
A
G
C
A
T
G
T
G
A
A
T
G
C
C
A
T
C
C
A
G
G
A
G
G
C
2100 |
var(2065):[A:0.01]
P S P S T Q P W E H V N A I Q E A 39
C
C
G
G
C
G
T
C
T
C
C
T
G
A
A
C
C
T
G
A
G
T
A
G
A
G
A
C
A
C
T
G
C
T
G
C
T
G
A
G
A
T
G
GTAAGTG
2150
R R L L N L S R D T A A E M 53
AGAGAATGTG GGCCTGTGCC TAGGCCACCC AGCTGGCCCC TGACTGGCCA
2200
CGCCTGTCAG CTTGATAACA TGACATTTTC CTTTTCTACA G
A
A
T
G
A
A
A
C
A
2250 | Exon 2
N E T 56
G
T
A
G
A
A
G
T
C
A
T
C
T
C
A
G
A
A
A
T
G
T
T
T
G
A
C
C
T
C
C
A
G
GTAAGAT GCTTCTCTCT
2300
V E V I S E M F D L Q 67
GACATAGCTT TCCAGAAGCC CCTGCCCTGG GGTGGAGGTG GGGACTCCAT
2350
TTTAGATGGC ACCACACAGG GTTGTCCACT TTCTCTCCAG TCAGCTGGCT
2400
GCAGGAGGAG GGGGTAGCAA CTGGGTGCTC AAGAGGCTGC TGGCCGTGCC
2450
CCTATGGCAG TCACATGAGC TCCTTTATCA GCTGAGCGGC CATGGGCAGA
2500
CCTAGCATTC AATGGCCAGG AGTCACCAGG GGACAGGTGG TAAAGTGGGG
2550
GTCACTTCAT GAGACAGGAG CTGTGGGTTT
G
GGGC
G
CTCA CTGTGCCCCG
2600 |
var(2581):[T:0.02]
|
var(2586):[A:0.04]
AGACCAAGTC CTGTTGAGAC AGTGCTGACT ACAGAGAGGC ACAGAGGGGT
2650
TTCAGGAACA ACCCTTGCCC ACCCAGCAGG TCCAGGTGAG GCCCCACCCC
2700
CCTCTCCCTG AATGATGGGG TGAGAGTCAC CTCCTTCCCT AAGGCTGGGC
2750
TCCTCTCCAG GTGCCGCTGA GGGTGGCCTG GGCGGGGCAG TGAGAAGGGC
2800
AGGTTCGTGC CTGCCATGGA CAGGGCAGGG TCTATGACTG GACCCAGCCT
2850
GTGCCCCTCC CAAGCCCTAC TCCTGGGGGC TGGGGGCAGC AGCAAAAAGG
2900
AGTGGTGGAG AGTTCTTGTA CCACTGTGGG CACTTGGCCA CTGCTCAC
C
G
2950 |
var(2949):[T:0.01]
ACGAACGACA TTTTCCACAG
G
A
G
C
C
G
A
C
C
T
G
C
C
T
A
C
A
G
A
C
C
C
G
C
C
T
G
G
A
G
3000 | Exon 3 |
var(2976):[A:0.01]
E P T C L Q T R L E 77
C
T
G
T
A
C
A
A
G
C
A
G
G
G
C
C
T
G
C
G
G
G
G
C
A
G
C
C
T
C
A
C
C
A
A
G
C
T
C
A
A
G
G
G
C
C
C
C
T
T
3050
L Y K Q G L R G S L T K L K G P L 94
G
A
C
C
A
T
G
A
T
G
G
C
C
A
G
C
C
A
C
T
A
C
A
A
G
C
A
G
C
A
C
T
G
C
C
C
T
C
C
A
A
C
C
C
C
G
GTGA
3100
T M M A S H Y K Q H C P P T P 109
GTGCCTACGG CAGGGCCTCC AGCAGGAATG TCTTAATCTA GGGGGTG
G
GG
3150 |
var(3148):[C:0.06]
TCGACATGGG GAGAGATCTA TGGCTGTGGC TGTTCAGGAC CCCAGGGGGT
3200
TTCTGTGCCA ACAGTTATGT AATGATTAGC CCTCCAGAGA GGAGGC
A
GAC
3250 |
var(3247):[G:0.07]
AGCCCATTTC ATCCCAAGGA GTCAGAGCCA CAGAGCGCTG AAGCCCACAG
3300
TGCTCCCCAG CAGGAGCTGC TCC
T
ATCCTG GTCATTATTG TCATTA
T
GGT
3350 |
var(3324):[C:0.01]
|
var(3347):[C:0.32]
TAATGAGGTC AGAGGTGAGG
G
CAAACCCAA GGAAACTTGG GGCCTGCCCA
3400 |
var(3371):[:0.09]
AGGCCCAGAG GAAGTGCCCA GGCCCAAGTG CCACCTTCTG GCAGGACTTT
3450
CCTCTGGCCC CACATGGGGT GCTTGA
A
TTG CAGAGGATCA AGGAAGGGAG
3500 |
var(3477):[G:0.05]
GCTACTTGGA ATGGACAAGG ACCTCAGGCA CTCCTTCCTG CGGGAAGGGA
3550
GCAAAGTTTG TGGCCTTG
A
C TCCACTCCTT CTGGGTGCCC AGAGACGACC
3600 |
var(3569):[T:0.01]
TCAGC
C
CAGC TGCCCTGCTC TGCCCTGGGA CCAAAAAGGC AGGCGTTTGA
3650 |
var(3606):[T:0.21]
CTGCCCAGAA GGCCAACCTC AGGCTGGCAC TTAAGTCAGG CCCTTGACTC
3700
TGGCTGCCAC TGGCAGAGCT ATGCACTCCT TGGGGAACAC
G
TGGGTGGCA
3750 |
var(3741):[A:0.01]
GCAGCGTCAC CTGACCCAGG TCAGTGGGTG TGTCCTGGAG TGGGCCTCCT
3800
GGCCTCTGAG TTCTAAGAGG CAGTAGAGAA ACATGCTGGT GCTTCCTTCC
3850
CCCACGTTAC CCACTTGCCT GGACTCAAGT GTTTTTTATT TTTCTTTTTT
3900
TAAAG
G
A
A
A
C
T
T
C
C
T
G
T
G
C
A
A
C
C
C
A
G
A
T
T
A
T
C
A
C
C
T
T
T
G
A
A
A
G
T
T
T
C
A
A
A
3950 | Exon 4 |
var(3922):[T:0.01]
|
var(3928):[C:0.27]
E T S C A T Q I I T F E S F K 124
G
A
G
A
A
C
C
T
G
A
A
G
G
A
C
T
T
T
C
T
G
C
T
T
G
T
C
A
T
C
C
C
C
T
T
T
G
A
C
T
G
C
T
G
G
G
A
G
C
C
4000
E N L K D F L L V I P F D C W E P 141
A
G
T
C
C
A
G
G
A
G
T
G
A
G
A
C
C
G
G
C
C
A
G
A
T
G
A
G
G
C
T
G
G
C
C
A
A
G
C
C
G
G
G
G
A
G
C
T
G
C
4050 |
UTR
|
var(4040):[T:0.01]
V Q E 144
T
C
T
C
T
C
A
T
G
A
A
A
C
A
A
G
A
G
C
T
A
G
A
A
A
C
T
C
A
G
G
A
T
G
G
T
C
A
T
C
T
T
G
G
A
G
G
G
A
C
4100
C
A
A
G
G
G
G
T
G
G
G
C
C
A
C
A
G
C
C
A
T
G
G
T
G
G
G
A
G
T
G
G
C
C
T
G
G
A
C
C
T
G
C
C
C
T
G
G
G
C
4150
C
A
C
A
C
T
G
A
C
C
C
T
G
A
T
A
C
A
G
G
C
A
T
G
G
C
A
G
A
A
G
A
A
T
G
G
G
A
A
T
A
T
T
T
T
A
T
A
C
T
4200
G
A
C
A
G
A
A
A
T
C
A
G
T
A
A
T
A
T
T
T
A
T
A
T
A
T
T
T
A
T
A
T
T
T
T
T
A
A
A
A
T
A
T
T
T
A
T
T
T
A
4250
T
T
T
A
T
T
T
A
T
T
T
A
A
G
T
T
C
A
T
A
T
T
C
C
A
T
A
T
T
T
A
T
T
C
A
A
G
A
T
G
T
T
T
T
A
C
C
G
T
A
4300
A
T
A
A
T
T
A
T
T
A
T
T
A
A
A
A
A
T
A
T
G
C
T
T
C
T
ACTT GTCCAGTGTT CTAGTTTGTT
4350
TTTAACCATG AGCAAATGCC AGTGGTGCCT GCCTTCCCAT GAGGCAGGG
G
4400 |
var(4400):[A:0.41]
AGGGAGGAAA CGGGGAGGTG GAGAGGGGGC GGGGGCCTCC CAGGCGTTGG
4450
GCACTATCCA AGGGCCAACA CTGTCAGAGC AGAGGGGAGG TGAGAGCCGG
4500
GCATAGGTGC GGAATTCTGC ACACCTGGAC GGGCTTCCCG GGATGCTCCA
4550
GGGCTCCCAC CCCAGAGAAT GGCTCTCAAG TTCACCTGGA AGTCCAAGTG
4600
ACCAGCCCAG GGAACTCTTA TCCCAGAGAA GGGCACCACC CTTCCTGGGG
4650
AGGCCTGGG
G
GTTGGCTGGT CACTGGCTGA ACAGGCCCAC TCTGGCATCA
4700 |
var(4660):[T:0.03]
GGCAA
A
ACAC CTGCCCTGTA GAGGCCTTGG CCCCTGTGCC CCACGCCCTG
4750 |
var(4706):[G:0.38]
CCCCTCACAC TCTGAGATTT AACCATTCCG AAAGTAAACA GCAAAATAGA
4800
CTAACTGTTC AGGGGAAAAG AAACCAAACC ACAGGGGTCA CAGTGCAGCG
4850
TATTTACCAA ACTTGCCCCA AAATGGGTGA TCTTAATCTC TGAGAGTCAG
4900
AATGTAAGGT CATAATTTGT TGGTACATGG CTGTAGTGCC GCATGTTTCT
4950
GAATTGGTTT TTATTTTTAC ATGAAATTTT GAATCTAATC AGGCACTTTC
5000
CCCTAAAACT CATGGCCTGC AGGCTAAAAA CAAAGTAGGC CTCCTCCTTC
5050
TCCTTACTTT GACAGCTGGG CTCAAGGCCT TGTTCCTGAA CCTGTTCCCT
5100
CATCTCCCTC CAGGACTATG AGGAAGTGGA TGTGCCCCAA GTCTTAGGCG
5150
GGCAGCAGGG CCAGCTTCTC CTTGACAGGT GGGCCTAAGG AAGCTGGCTT
5200
GTGGCAGCTT TAGCCCCTGC CTGGCACTGT CTGCAGTCAT GCGCCCACCA
5250
CCCCTCTTGC TTCCTCTACT TCAGTCAGCA CCTGCAGACA GCGCCAGGCC
5300
TGGCCAGAGA CCCACTCCAT GCTCATGCAG AAAGACCGTG ACTTCAGGTG
5350
TGATTACAAA TAAGAAGTCA GGGTGAACGC TCAGGATGAA GCCTGAGTGT
5400
CAGCACAGGC AAGAATCCAT GAAGTGTGCT GTGGTTGTTG AAAATGCATG
5450
AAAATCACAT CTTGCCCAGC GATAAGGTCC TCTCTGTCTT CCGCGTAAGC
5500
CAGTGATGAC TGATAAGAGG TTTAGCATTT CCTTAGCCTC ACATATATAG
5550
GTACCCCTCT CCACAGAAAT GCTGCCAAGC CCAGGGCTCG GACCAGCTTG
5600
GAGTCACCTT CAAGTAATAC CATGCACCTG TACGTGCTCC TGGCTCATGT
5650
GCTCTGGGGG TCAGAAAGCC ATTCTTCCCA ATGAAAGTAG CCACGATATC
5700
TCCCCACGAA AAGTACACAG CA
G
TCTGTGC TGACATTCAG AAAGAACTCT
5750 |
var(5723):[A:0.40]
CGGCTGACAA TAACACA
C
AC AAGATAAGTC TGGGTCTCCA TCAAACG
T
TA
5800 |
var(5768):[T:0.14]
|
var(5798):[C:0.02]
TTTTGCTCTT AGTGCCCCTT TGTGCTCCTG ACCAATTTCT CTGGCTTCCG
5850
GGGTCCCTTC AATAG
G
CCCC AGAAAACCAG TGAGGTAAGA AACAGCTGCC
5900 |
var(5866):[T:0.01]
CCGGGACCTT TCATACCACA TTTGAACAGG GAGAGAGAGA TCTCACCAGT
5950
CAGTGCCCAG GGAAGAGATA ACAACAAGGG ATAGTGGAGT GA