LOCUS AF449713 6836 bp DNA linear PRI 12-DEC-2001 DEFINITION Homo sapiens C-reactive protein, pentraxin-related (CRP) gene, complete cds. ACCESSION AF449713 VERSION AF449713.1 GI:17530542 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 6836) AUTHORS Rieder,M.J., Armel,T.Z., Carrington,D.P., Chung,M.-W., Lee,K.L., Poel,C.L., Toth,E.J., Yi,Q. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (21-NOV-2001) Molecular Biotechnology, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA COMMENT To cite this work please use: SeattleSNPs. NHLBI Program for Genomic Applications, UW-FHCRC, Seattle, WA (URL: http://pga.mbt.washington.edu). FEATURES Location/Qualifiers source 1..6836 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" repeat_region 1..94 /rpt_family="LINE" /rpt_type=dispersed repeat_region 95..578 /rpt_family="LTR" /rpt_type=dispersed repeat_region 579..777 /rpt_family="LINE" /rpt_type=dispersed variation 790 /frequency="0.12" /replace="t" variation 969 /frequency="0.21" /replace="c" variation 970 /frequency="0.01" /replace="a" repeat_region 991..1253 /rpt_family="LINE" /rpt_type=dispersed variation 1009 /frequency="0.21" /replace="g" variation 1123 /frequency="0.11" /replace="g" variation 1421 /frequency="0.12" /replace="a" variation 1440 /frequency="0.19" /replace="a" variation 1440 /frequency="0.38" /replace="t" variation 1632 /frequency="0.01" /replace="t" variation 1724 /frequency="0.02" /replace="t" gene 1741..3653 /gene="CRP" mRNA join(1741..1890,2177..3653) /gene="CRP" /product="C-reactive protein, pentraxin-related" CDS join(1830..1890,2177..2790) /gene="CRP" /codon_start=1 /product="C-reactive protein, pentraxin-related" /protein_id="AAL40835.1" /db_xref="GI:17530543" /translation="MEKLLCFLVLTSLSHAFGQTDMSRKAFVFPKESDTSYVSLKAPL TKPLKAFTVCLHFYTELSSTRGYSIFSYATKRQDNEILIFWSKDIGYSFTVGGSEILF EVPEVTVAPVHICTSWESASGIVEFWVDGKPRVRKSLKKGYTVGAEASIILGQEQDSF GGNFEGSQSLVGDIGNVNMWDFVLSPDEINTIYLGGPFSPNVLNWRALKYEVQGEVFT KPQLWP" variation 1919 /gene="CRP" /frequency="0.21" /replace="t" misc_feature 1980..2100 /gene="CRP" /note="Region not scanned for variation" variation 2667 /gene="CRP" /frequency="0.03" /replace="c" variation 2892 /gene="CRP" /frequency="0.01" /replace="t" variation 3006 /gene="CRP" /frequency="0.16" /replace="a" variation 3014 /gene="CRP" /frequency="0.23" /replace="t" repeat_region 3058..3136 /rpt_family="SINE" /rpt_type=dispersed variation 3577 /gene="CRP" /frequency="0.02" /replace="c" repeat_region 3622..4055 /rpt_family="LTR" /rpt_type=dispersed variation 3872 /frequency="0.19" /replace="a" variation 4069 /frequency="0.05" /replace="g" variation 4362 /frequency="0.02" /replace="a" repeat_region 4533..4767 /rpt_family="SINE" /rpt_type=dispersed variation 4741 /frequency="0.20" /replace="g" variation 4974 /frequency="0.13" /replace="g" variation 5237 /frequency="0.21" /replace="g" variation 5288 /frequency="0.01" /replace="c" variation 5606 /frequency="0.02" /replace="a" variation 5676 /frequency="0.01" /replace="t" variation 5728 /frequency="0.01" /replace="c" variation 6150 /frequency="0.11" /replace="" variation 6192 /frequency="0.20" /replace="a" variation 6333..6335 /frequency="0.12" /replace="" variation 6469 /frequency="0.22" /replace="g" variation 6556 /frequency="0.02" /replace="t" repeat_region 6645..6769 /rpt_family="MER1_type" /rpt_type=dispersed variation 6677 /frequency="0.01" /replace="t" ORIGIN 1 gttggcctta gatgtaacac agggagagct catccctttt aatagaggaa gacagaaagg 61 ctggtacatt gggttgtagg aggatatata aggatatcag ttaggtgtta agaacagaaa 121 gactgagtta acagtgattt aacaaaagag gagagtattt ctcctttaag taaattttca 181 ggtaggcagc ctagagctga tgcagtggct ccatacccaa ttatccaggc tccatctatc 241 ttgttgccat gccaacctca acatgcagct tacacttgct ggcctgaaag tgaactattc 301 catctcctgc tatcatgact gaatactagt caaagggaaa aagggggaag tgggagggga 361 aagcacatac ctttcttaaa gagcacaacc tagagatggt ccctattctg ttcatatctc 421 gttggcctta atttaatcac atcatcactg caagctacag tgggggctgg gaaatttggt 481 gtttgagggg atgaccaagc gcccaactga aaatgttatt cttctcttat gagaagtaga 541 gaatggatgt tagggaatgg ctagaagact ctactacaaa ggatacggtg gttcttttct 601 gattgcttct aacttctcaa tgaaaggtga gttcatcagc tgaatgaaag aataaatgag 661 attttgggga cttgaggagc aaggagaagg agtataatag tcattttgaa gagtgagtta 721 agtagggaac tgtagtaaga ttgacagaca gtgtggaggg attacttgaa tcttgtgaat 781 agaggaaaga gtagaatcag attatcctga ctcctgcctg aagctttaca tattcagaga 841 aaaatgttgg aagaaacttt gatataatgc tatgtctgtg atcaggcaca cattttactg 901 gacttttact gtcagggccg tcatttagtg ccaagatgtc tagagagttc ttaataagtg 961 tactcaattg gctgagaaaa tgtgtccatg caaaaaacca aacaccgcat gttctcactc 1021 atagatggga attgaacaat gagaatactt ggacacagga aggggaacat cacactctgg 1081 ggactgttgt ggggtggggg gaggggggag ggatagcatt agaagatata cctaatgcta 1141 aatgatgagt taatgggtgc agcacaccag catggcacat gtatacatat gtaactaacc 1201 tgcacattgt gcacatgtac cctaaaactt aaagtataat aataataaaa aaatgtgtcc 1261 atggctctgg gaggagcatg tttgttttcc tcatttccca gtctgtaaat aagcaaattg 1321 aaaggggtta gtgataatgt ccatctccag aagctgtcag atttcctttg tcaaactcta 1381 tgatttgggc tgaagtaggt gttggagagg cagctaccac gtgcacccag atggccactc 1441 gtttaatatg ttaccatttc ccattatttt cgcaggatag atagccaaag tggagccctg 1501 agagatttct tcatttttcc tgtcataaag aattggtaat tcagtagtca taggagtttg 1561 taataaataa ctcacattga tttctctgtt ctgaaataat tttgcttccc ctcttcccga 1621 agctctgaca cctgccccaa caagcaatgt tggaaaatta tttacatagt ggcgcaaact 1681 cccttactgc tttggatata aatccaggca ggaggaggta gctctaaggc aagagatcta 1741 ggacttctag cccctgaact ttcagccgaa tacatctttt ccaaaggagt gaattcaggc 1801 ccttgtatca ctggcagcag gacgtgacca tggagaagct gttgtgtttc ttggtcttga 1861 ccagcctctc tcatgctttt ggccagacag gtaagggcca ccccaggcta tgggagagat 1921 ttgatctgag gtatgggggt ggggtctaag actgcatgaa cagtctcaaa aaaaaaaaaa 1981 aaagactgta tgaacagaac agtggagcat ccttcatggt gtgtgtgtgt gtgtgtgtgt 2041 gtgtgtgtgt gtgtgtggtg tgtaactgga gaaggggtca gtctgtttct caatcttaaa 2101 ttctatacgt aagtgagggg atagatctgt gtgatctgag aaacctctca catttgcttg 2161 tttttctggc tcacagacat gtcgaggaag gcttttgtgt ttcccaaaga gtcggatact 2221 tcctatgtat ccctcaaagc accgttaacg aagcctctca aagccttcac tgtgtgcctc 2281 cacttctaca cggaactgtc ctcgacccgt gggtacagta ttttctcgta tgccaccaag 2341 agacaagaca atgagattct catattttgg tctaaggata taggatacag ttttacagtg 2401 ggtgggtctg aaatattatt cgaggttcct gaagtcacag tagctccagt acacatttgt 2461 acaagctggg agtccgcctc agggatcgtg gagttctggg tagatgggaa gcccagggtg 2521 aggaagagtc tgaagaaggg atacactgtg ggggcagaag caagcatcat cttggggcag 2581 gagcaggatt ccttcggtgg gaactttgaa ggaagccagt ccctggtggg agacattgga 2641 aatgtgaaca tgtgggactt tgtgctgtca ccagatgaga ttaacaccat ctatcttggc 2701 gggcccttca gtcctaatgt cctgaactgg cgggcactga agtatgaagt gcaaggcgaa 2761 gtgttcacca aaccccagct gtggccctga ggcccagctg tgggtcctga aggtacctcc 2821 cggtttttta caccgcatgg gccccacgtc tctgtctctg gtacctcccg cttttttaca 2881 ctgcatggtt cccacgtctc tgtctctggg cctttgttcc cctatatgca ttgcaggcct 2941 gctccaccct cctcagcgcc tgagaatgga ggtaaagtgt ctggtctggg agctcgttaa 3001 ctatgctggg aaacggtcca aaagaatcag aatttgaggt gttttgtttt catttttatt 3061 tcaagttgga cagatcttgg agataatttc ttacctcaca tagatgagaa aactaacacc 3121 cagaaaggag aaatgatgtt ataaaaaact cataaggcaa gagctgagaa ggaagcgctg 3181 atcttctatt taattcccca cccatgaccc ccagaaagca ggagggcatt gcccacattc 3241 acagggctct tcagtctcag aatcaggaca ctggccaggt gtctggtttg ggtccagagt 3301 gctcatcatc atgtcataga actgctgggc ccaggtctcc tgaaatggga agcccagcaa 3361 taccacgcag tccctccact ttctcaaagc acactggaaa ggccattaga attgccccag 3421 cagagcagat ctgctttttt tccagagcaa aatgaagcac taggtataaa tatgttgtta 3481 ctgccaagaa cttaaatgac tggtttttgt ttgcttgcag tgctttctta attttatggc 3541 tcttctggga aactcctccc cttttccaca cgaaccttgt ggggctgtga attctttctt 3601 catccccgca ttcccaatat acccaggcca caagagtgga cgtgaaccac agggtgtcct 3661 gtcagaggag cccatctccc atctccccag ctccctatct ggaggatagt tggatagtta 3721 cgtgttccta gcaggaccaa ctacagtctt cccaaggatt gagttatgga ctttgggagt 3781 gagacatctt cttgctgctg gatttccaag ctgagaggac gtgaacctgg gaccaccagt 3841 agccatcttg tttgccacat ggagagagac tgtgaggaca gaagccaaac tggaagtgga 3901 ggagccaagg gattgacaaa caacagagcc ttgaccacgt ggagtctctg aatcagcctt 3961 gtctggaacc agatctacac ctggactgcc caggtctata agccaataaa gcccctgttt 4021 acttgagtga gtccaagctg ttttctgata gttgctttag aagttgtgac taacttctct 4081 aatgaccttt gaaatcaagt ccctgtaagt ttacacttcc cattacacaa catatccatg 4141 gcactttaac ctgtccaaga gtcccctgaa gggattccct ctgacaagca cagtccctct 4201 tttgagatag ctggccattc atgtagggcc agttgtgggg gttttagtac tctcattcta 4261 tcattattcc aatttgagga gcaaaaacta aagatcattg agatccatgg atctgctgcc 4321 aggttcagtg actggaatgc acttgcccca gcgggttcaa gttctttgta gaaacagacc 4381 cctcaaagat gacagcagct ggcttcctcc agaagtgtcc ttcaacactg tctttcagta 4441 ctaagtgacc agtagaagtt actccataaa gaccatagcc aggaatgaat tatggggctt 4501 cctgcatatc aaatggttac ctagggaagg catatggtaa actagttaag cacagaggtt 4561 ctggaatcag actgcctagg tccaaatcct ggctttacaa cttactagct atgtgacctt 4621 aggtgatata acctctttac gcctcagttt tcttacctac aaagcaggag aaataatagt 4681 aattagctca aagggttgct ataagaatca aagaaaatca tgcaagcaaa gcacttacta 4741 cagtgcctgg cacatagtaa gctcttataa cagttttctg gtattattct tattaagcca 4801 ttttgtatta tatccataaa tgtagattca taaaatacat aaaaatacaa cttggtagaa 4861 tttgtcttgg ttggcagcag ttgaagcttc tcatttgcta agaattaggt ttagaatgtt 4921 agaagggtga acaacaagtc tttgaagcca ttatttatga atattgactt ctctaattga 4981 cttttgataa ccatttgtaa gcatagaagc taaggataca ttctcagaca aaaatgagag 5041 tgcaaatact ctctgttgtc caattagggc agatccatcc atcctcacat tcagctaagc 5101 agaagagagg attgacactc ttttctagtt aaataatcca gatacgtctt aattatagaa 5161 ggccatccca actccccagg gatgtaggtt gagctaatat tttcttcaga attcagttgc 5221 ttgcatctta ctatacatag tctggtagac agcctctggc cttaataatt tgagccagga 5281 aaatcttaac agctggtatt tgcattcaga gaacattaaa aaatcttaac aaagcattcg 5341 taggatgttt agatttaagc aatttagcct actggtgggt acatcaatgt aaacttgttg 5401 gaaaatgtat ttccaggtaa ctggtgaatt gtcataccat atagagctat tagatgtaat 5461 ccaattaaat gttagatgac atctgccaaa gaagatgatt ctgatttggg catgttggtt 5521 ctaagcaatg cttttttttt tttgcagtaa gtggagagta agatcaaaca tccaccgtgg 5581 ccacttctag ctgatgctaa taaaaccatg ttgtcaggac tggttttctg ttagagtagg 5641 gaccatggat ccaatttttc cagaagtaga atcaggcctc aaggaatgag ttaaaaagac 5701 atagggacaa atggtctata aaacctataa tagaaaggag gtgaaagcgg ggtggtggcc 5761 cagtgcctga agagatactg tagtgcattt acaggccaaa taagagaaag tagaacaata 5821 gtatgaatca gagatgatgg aggctgctac ttgatagaac actttctttt tggaactgaa 5881 aatagccatg ttggtataag ggttagggcc aggcctgacc ctaatgtaag cgccttagca 5941 tgggatgtga tatggagatg tgcagatcag aaacctaaaa tctccctgtg tcagaaaaaa 6001 atgttagctc actggccagg caacaagact tgcacacttt ccaaaaagag gtggtcatgg 6061 agagagcatt gttaagaatg ggctgcatgt caggccaggt gagtggatga gaagccacct 6121 ctgtgatgag acttggtcta tccaggccct ggaggagaga gtacaggctg cctcaaaagt 6181 gaggctggga cctgatggaa atggatttgg agtcccagct gacaaagtaa gtagaatgtt 6241 aaatctgtga tattctcccc catgctttca ctatcctcaa gtttgatgtg ccccaggcaa 6301 gcaaagattg acaaaggaag caaatgactc tagatgattg agcaccacca ccacgtagat 6361 caaatttcca aagtatagat ttctgatcac tagaatccca gggaaaagag aagcactgct 6421 ttgatttcta ggtagcttat cctaggacaa ctgcccacta gtctcagatg ggttgtcgta 6481 cttgcctgga ttccttctct tcagctccct gtctctattt caaatatgca tcttttcatt 6541 tcctctgcac tagaacgtag gttaagcggg cttgttagcc ttttccttct gaaaatgcag 6601 actcctagct caaatttcct ggatcacctg gcccagtgat cacttatagt ctgctgatta 6661 caggcatcat tttcctctgg ggtgtttgag tatagattca ttgaccccag tcctcctaga 6721 gtagattctc tggggttagt gctcaggaat atgcaagatc acaagctctt ttgtaccatg 6781 tgcttttaga gctatcactg tagtgttttc ctgacagctc agatttctta tctcag //