Site Genotype1 AD-pop ED-pop Total-pop Genotype2 AD-pop ED-pop Total-pop Genotype3 AD-pop ED-pop Total-pop AD-chi2 ED-chi2 Total-chi2 001690 AA 0 0 0 AG 2 3 5 GG 22 20 42 0.045 0.112 0.148 001788 -- 0 0 0 +- 3 0 3 ++ 21 23 44 0.107 0.000 0.051 001807 CC 22 18 40 CT 2 5 7 TT 0 0 0 0.045 0.342 0.304 002146 GG 0 0 0 GT 1 0 1 TT 19 20 39 0.013 0.000 0.006 002235 AA 14 17 31 AG 7 4 11 GG 1 0 1 0.011 0.233 0.000 002982 AA 23 21 44 AT 1 0 1 TT 0 0 0 0.011 0.000 0.006 002988 CC 24 20 44 CT 0 1 1 TT 0 0 0 0.000 0.012 0.006 003029 GG 0 0 0 GT 4 0 4 TT 20 21 41 0.198 0.000 0.097 003039 -- 0 0 0 +- 2 4 6 ++ 22 16 38 0.045 0.247 0.236 003064 CC 0 0 0 CG 1 1 2 GG 23 20 43 0.011 0.012 0.023 003087 CC 0 0 0 CT 0 5 5 TT 24 16 40 0.000 0.383 0.156 003741 CC 0 0 0 CT 2 0 2 TT 19 19 38 0.053 0.000 0.026 003879 CC 20 17 37 CG 2 1 3 GG 0 0 0 0.050 0.015 0.061 004706 AA 0 0 0 AC 2 1 3 CC 11 3 14 0.090 0.082 0.159 004762 CC 1 1 2 CG 9 2 11 GG 3 1 4 2.273 0.000 1.658 005089 AA 21 20 41 AT 1 0 1 TT 0 0 0 0.012 0.000 0.006 005205 -- 18 18 36 +- 4 3 7 ++ 0 0 0 0.220 0.124 0.338 005207 CC 21 19 40 CT 1 0 1 TT 0 0 0 0.012 0.000 0.006 005208 -- 4 0 4 +- 4 7 11 ++ 14 16 30 6.455 0.741 3.187 005269 CC 18 18 36 CT 4 3 7 TT 0 0 0 0.220 0.124 0.338 005700 AA 0 0 0 AT 1 0 1 TT 20 19 39 0.012 0.000 0.006 005723 AA 0 0 0 AC 0 1 1 CC 19 18 37 0.000 0.014 0.007 005832 AA 0 0 0 AG 1 0 1 GG 21 21 42 0.012 0.000 0.006 005895 CC 18 21 39 CT 1 0 1 TT 0 0 0 0.014 0.000 0.006 005905 AA 15 13 28 AG 4 8 12 GG 3 0 3 5.119 1.163 1.058 006854 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 007133 AA 13 1 14 AC 10 6 16 CC 1 11 12 0.296 0.023 2.346 007254 -- 20 18 38 +- 4 0 4 ++ 0 0 0 0.198 0.000 0.105 007668 AA 1 0 1 AC 3 1 4 CC 20 22 42 2.617 0.011 3.895 007792 AA 19 23 42 AG 4 0 4 GG 1 0 1 1.361 0.000 3.895 009983 CC 17 10 27 CT 2 6 8 TT 1 1 2 3.951 0.006 1.544 010070 -- 0 0 0 +- 1 0 1 ++ 19 19 38 0.013 0.000 0.007 010182 AA 0 0 0 AG 1 0 1 GG 18 19 37 0.014 0.000 0.007 010516 AA 0 0 0 AC 0 2 2 CC 21 20 41 0.000 0.050 0.024 010755 -- 0 0 0 +- 2 0 2 ++ 19 22 41 0.053 0.000 0.024 011335 AA 20 23 43 AG 1 0 1 GG 0 0 0 0.012 0.000 0.006 011445 AA 4 13 17 AC 13 9 22 CC 4 1 5 1.190 0.130 0.284 011493 AA 20 22 42 AG 1 0 1 GG 0 0 0 0.012 0.000 0.006 011494 AA 20 21 41 AT 1 1 2 TT 0 0 0 0.012 0.012 0.024 011749 AA 21 22 43 AC 2 0 2 CC 0 0 0 0.048 0.000 0.023 012113 CC 19 22 41 CG 3 0 3 GG 1 0 1 2.457 0.000 5.985 012322 CC 1 0 1 CT 3 0 3 TT 19 22 41 2.457 0.000 5.985 012494 GG 0 0 0 GT 2 1 3 TT 21 18 39 0.048 0.014 0.058 012572 AA 21 8 29 AT 1 13 14 TT 1 1 2 9.521 2.182 0.035 012736 AA 0 0 0 AG 1 0 1 GG 22 23 45 0.011 0.000 0.006 012905 AA 0 0 0 AG 1 0 1 GG 21 22 43 0.012 0.000 0.006 013165 CC 20 20 40 CT 2 0 2 TT 1 0 1 4.707 0.000 9.727 013265 CC 19 18 37 CT 2 0 2 TT 0 0 0 0.053 0.000 0.027 013294 CC 18 4 22 CG 3 7 10 GG 0 8 8 0.124 0.996 7.403 013443 AA 20 19 39 AG 1 0 1 GG 0 0 0 0.012 0.000 0.006 013734 CC 0 0 0 CT 1 0 1 TT 18 18 36 0.014 0.000 0.007 013752 -- 18 18 36 +- 2 0 2 ++ 1 0 1 4.203 0.000 8.724 014300 GG 0 0 0 GT 1 0 1 TT 19 23 42 0.013 0.000 0.006 014305 GG 3 2 5 GT 8 8 16 TT 8 13 21 0.172 0.221 0.497 014365 AA 0 0 0 AG 4 0 4 GG 16 23 39 0.247 0.000 0.102 014706 CC 21 23 44 CT 3 0 3 TT 0 0 0 0.107 0.000 0.051 014889 AA 0 0 0 AG 2 0 2 GG 20 21 41 0.050 0.000 0.024 015191 -- 0 0 0 +- 1 0 1 ++ 22 21 43 0.011 0.000 0.006 015234 CC 1 0 1 CT 2 0 2 TT 21 23 44 4.959 0.000 10.729 015303 CC 0 0 0 CG 1 0 1 GG 19 22 41 0.013 0.000 0.006 015416 CC 1 2 3 CT 1 8 9 TT 19 13 32 8.629 0.221 3.369 015930 -- 11 4 15 +- 5 5 10 ++ 0 7 7 0.549 1.985 3.556 016084 CC 0 8 8 CT 4 2 6 TT 7 1 8 0.543 1.664 4.545 016577 CC 0 0 0 CT 1 3 4 TT 15 12 27 0.017 0.185 0.147 016729 AA 0 0 0 AG 0 2 2 GG 24 21 45 0.000 0.048 0.022 016796 AA 7 1 8 AC 14 12 26 CC 3 10 13 0.960 1.239 0.666 016802 CC 2 0 2 CT 11 0 11 TT 11 23 34 0.107 0.000 0.763 016821 -- 17 23 40 +- 7 0 7 ++ 0 0 0 0.700 0.000 0.304 016947 AA 0 0 0 AG 0 1 1 GG 23 22 45 0.000 0.011 0.006 016959 CC 0 0 0 CT 1 0 1 TT 21 23 44 0.012 0.000 0.006 017228 AA 16 6 22 AT 7 17 24 TT 1 0 1 0.044 7.904 3.581 017608 CC 18 23 41 CT 5 0 5 TT 1 0 1 0.644 0.000 2.448 017685 -- 0 0 0 +- 7 0 7 ++ 17 23 40 0.700 0.000 0.304 017914 -- 1 0 1 +- 5 0 5 ++ 18 23 41 0.644 0.000 2.448 018051 AA 7 6 13 AT 11 15 26 TT 1 2 3 1.556 2.738 4.102 018063 CC 0 0 0 CT 0 1 1 TT 19 22 41 0.000 0.011 0.006 018485 CC 2 0 2 CT 11 7 18 TT 10 16 26 0.179 0.741 0.261 018647 CC 22 22 44 CT 2 1 3 TT 0 0 0 0.045 0.011 0.051 018648 AA 0 0 0 AC 2 1 3 CC 22 22 44 0.045 0.011 0.051 018649 CC 22 22 44 CG 2 1 3 GG 0 0 0 0.045 0.011 0.051 018650 AA 0 0 0 AT 2 1 3 TT 22 22 44 0.045 0.011 0.051 019056 CC 1 0 1 CT 2 0 2 TT 21 22 43 4.959 0.000 10.478 019516 -- 0 3 3 +- 0 10 10 ++ 24 10 34 0.000 0.040 2.863 Note: AD: African_Descent ED: European_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 001788: g 003039: AG 005205: C 005208: T 007254: ca 010070: CT 010755: CTT 013752: a 015191: ga 015930: T 016821: AGtt 017685: aat 017914: aaagt 019516: attt