CKLF Color FASTA
The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.
*Display courtesy of
GeneSNPs
CTGTCTCTCC CATTCTCCGA GCTTGTCCTC AGAGAATTAG GTAACTTGTT
50
CAAAATGGTC AGAAGCAACA GATATAACTC CTTGCTCTAC TCTTTCCCCC
100
CTTCTCACTA CTGCACTTGA CTAGTCTTTT TAAAACATAA
A
TTTTTT
T
G
G
150 |
var(141):[T:0.02]
|
var(148):[:0.99]
|
REPEAT
C
C
A
G
G
C
A
C
G
G
T
G
G
C
T
C
A
C
G
C
C
T
G
T
A
A
T
C
C
C
A
G
C
A
C
T
T
T
G
G
G
A
G
G
C
C
A
A
G
G
200
A
A
G
G
C
A
G
A
T
C
A
C
C
T
G
A
G
G
C
C
A
G
A
A
G
T
T
C
G
A
G
A
C
C
A
G
C
C
T
T
G
G
C
C
A
A
C
A
T
G
250
G
C
G
A
A
A
C
C
C
C
A
T
C
G
C
T
A
C
T
A
A
A
A
A
T
G
C
A
A
A
A
A
T
T
A
G
C
T
G
G
G
T
G
T
G
G
T
G
G
G
300
G
G
G
C
A
C
C
C
G
T
A
T
T
C
C
C
A
G
C
T
A
C
T
C
A
G
G
A
G
G
C
T
G
A
G
G
C
A
G
G
A
A
A
A
T
C
G
C
T
T
350
G
A
A
C
C
T
G
G
G
A
G
G
C
A
G
A
G
A
T
T
G
C
A
G
T
G
A
G
C
C
G
A
G
A
T
C
A
C
T
G
C
A
C
T
G
C
A
C
T
C
400 |
var(381):[C:0.01]
C
A
G
C
C
T
G
A
G
C
A
A
C
A
G
A
G
G
G
A
C
A
C
T
T
C
G
T
T
C
C
C
C
C
C
G
C
C
A
A
A
A
A
A
A
A
A
A
T
T
450 |
var(449):[A:0.13]
TTTTTTTAAT GATCAGAA
G
C
G
G
C
T
G
G
G
C
G
C
G
G
T
G
G
C
T
C
G
G
G
C
C
T
G
T
A
A
T
C
500 |
NOT SCANNED
|
REPEAT
C
C
A
G
C
A
C
T
T
T
C
G
G
A
G
G
C
C
G
A
G
G
A
A
G
G
T
A
G
A
T
C
A
C
T
T
G
A
G
G
T
C
A
T
G
A
G
T
T
C
550
A
A
G
A
C
C
A
G
C
C
T
G
A
C
C
A
A
C
A
T
G
G
C
C
A
A
A
A
A
C
T
G
T
C
T
C
T
A
C
T
A
A
A
A
A
T
A
C
A
A
600
A
A
A
T
T
A
G
C
C
G
G
G
C
G
T
G
G
T
A
G
C
G
C
A
C
G
C
C
T
G
T
A
A
T
C
C
C
A
G
C
T
A
C
T
C
A
G
G
A
G
650
G
C
T
C
A
G
G
C
A
C
G
A
G
A
A
T
C
G
C
T
T
G
A
G
T
C
T
G
G
G
A
G
G
C
G
G
A
G
G
T
T
G
C
A
G
T
G
A
G
C
700
T
G
A
G
A
T
C
G
T
G
G
C
C
A
C
T
G
C
A
A
T
C
C
A
G
C
C
T
G
G
G
C
G
A
T
A
G
A
G
T
G
A
G
A
C
T
A
C
G
T
750
C
T
C
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
TCAG AAGCATTCAT TAAGGGGTGA
800
AGCTAGAATT CCAGCCCATT TCTCTTGCTT TGCAGCTGGA GCTCTTTCCT
850
CTGAACTTTG ACAGTTCCAG CGTCTAGACT CTAAACGTAC
T
AGATCCCTC
900 |
var(891):[C:0.02]
CAGAGGAGGC AACCAAATAT TCCAACTATA CAGACAAGTA GGGGCTAGGG
950
AGGAAGCATG TAAATTCCAT CATACTCAGC AAAAATTCAG CCCAGATG
T
G
1000 |
var(999):[C:0.03]
GAGTCACAGA GTATTAGAAT TCAACAGGCC CAAGTCCAGT AACCGGAGCT
1050
GTTGCCACTC TTGACTGTGA AGGTTCCAGT GCTTGCGTGG AGGGGTTTCT
1100
CACCTCTCCC GGGAGGGCGT GATGCTGGCA GTCACCACTA GGCAGGGAGA
1150
AGGAAGTCAT TTGCCTCTAG ATCTGCTGCC TCATCTTGTG CTTCCTGTAT
1200
ATCTGCCACA CACCTAGCAA GTGTGCTCTC CGTAAATAAA CTTCAGGATT
1250
AAGGCCATTT TTGTGAGTGA T
T
TGT
G
A
T
G
A
A
G
C
T
G
T
T
G
G
A
G
G
T
A
A
C
T
G
T
C
1300 |
var(1272):[C:0.01]
|
NOT SCANNED
G
A
T
C
A
G
A
T
T
T
A
A
A
A
G
A
A
T
G
A
A
A
T
G
G
A
C
T
G
A
A
G
C
T
G
A
G
A
T
G
G
G
C
A
G
G
A
T
C
C
1350
A
A
A
C
A
G
A
T
C
T
G
A
A
T
G
A
A
C
T
A
C
G
G
T
G
A
T
G
G
C
C
A
A
A
T
T
A
T
C
C
A
A
G
A
T
A
G
A
A
T
1400
G
T
A
A
A
T
C
A
C
A
T
A
A
A
A
G
GAGC GACATATACT TCCCATCCCT AAAAAGGAAT
1450
GCCCCAAGAC GGTGGAGATC TGGCTTCATG GCAGCACTTG AGAAAAAACA
1500
TTAAGTATCT GAAGGGACTC AGGCTGTTCC ACGGAAGAAC TAGTACCAGT
1550
GGGAGGCAAA AGTAAAAATA TGCAGAACAA GTCCCGAGTG TGATGCCCTG
1600
GGGGCTTGGA TAGGACCTGA GGCTGCACAC TTTCT
G
C
A
C
C
A
A
C
T
A
T
G
T
G
C
1650 |
REPEAT
C
A
G
A
A
C
C
T
G
G
G
C
C
C
T
G
C
A
G
G
G
A
G
A
G
A
A
G
C
A
G
A
C
C
A
G
T
C
C
C
T
G
C
T
T
T
T
G
T
G
1700
G
A
A
T
T
T
G
T
A
T
T
T
T
TCTGATA TATATCAGCT AGCAATAAAC GCTCAGAAGT
1750
TAT
G
G
T
G
G
C
T
G
C
T
C
T
A
G
A
C
G
G
G
A
T
G
A
C
C
A
A
A
G
G
A
G
A
T
C
C
C
C
T
T
T
A
A
G
G
A
G
1800 |
REPEAT
G
T
G
A
T
A
T
T
CA CAATGCCCAA GTTGTTGGGA GATGGGGCCG CCATTTCTA
C
1850 |
var(1850):[G:0.05]
AGCCCCCTCC CTCTCCTCTG CTCCCAACCC TGGGAGGATT TCCCGACAGG
1900
AAGACTCCTC AGGAGAGCTG GAGTGCTGCC GTCATTAACG CCAGGCCAGA
1950
ACACGGCGGG CTAACAGGGC GCTGGCCTGC GTGCCCACCT CTAGGTCCGC
2000
TAATATGTGC CCAGCTC
T
A
G
G
T
C
C
G
C
T
A
A
T
G
T
G
C
T
A
C
G
C
G
A
T
A
A
C
T
G
A
A
A
2050 |
NOT SCANNED
G
A
C
A
G
C
A
C
A
A
G
C
C
A
G
A
G
C
G
G
A
C
G
G
C
C
G
C
G
G
G
A
T
C
C
C
G
T
T
G
G
G
G
C
G
C
A
T
G
C
2100
G
C
G
A
G
A
G
C
G
A
A
C
G
C
G
G
C
G
C
C
G
T
G
C
GCATGC GC
G
C
A
A
G
A
G
A
G
C
G
G
G
A
A
G
C
C
2150 | Exon 1 |
UTR
G
A
G
C
T
G
G
G
C
G
A
G
A
A
G
T
A
G
G
G
G
A
G
G
G
C
G
G
T
G
C
T
C
C
G
C
C
G
C
G
G
T
G
G
C
G
G
T
T
G
2200
C
T
A
T
C
G
C
T
T
C
G
C
A
G
A
A
C
C
T
A
C
T
C
A
G
G
C
A
G
C
C
A
G
C
T
G
A
G
A
A
G
A
G
T
T
G
A
G
G
G
2250
A
A
A
G
T
G
C
T
G
C
T
G
C
T
G
G
G
T
C
T
G
C
A
G
A
C
G
C
G
A
T
G
G
A
T
A
A
C
G
T
G
C
A
G
C
C
G
A
A
A
2300 |
var(2270):[G:0.01]
M D N V Q P K 7
A
T
A
A
A
A
C
A
T
C
G
C
C
C
C
T
T
C
T
G
C
T
T
C
A
G
T
G
T
G
A
A
A
G
G
C
C
A
C
G
T
G
A
A
G
A
T
G
C
T
2350
I K H R P F C F S V K G H V K M L 24
G
C
G
G
C
T
G
GTG AGGCCGGGCC GCGGAGGGCG GGAGGCTGAT GAAGCTGCTG
2400
R L 26
GGGGGCGGGA GATGTGGGT
G
TGAAGTGCAA AGCTGAACGC CTGTTTGCTT
2450 |
var(2420):[A:0.16]
TTCAACCTCG CTTTGATCAA GATTGAAAGG CAAGGCATGG CCTCCTTGGG
2500
GAAGAAGGAG AGAGATACGG CACTGTCCTC CCCTTAGGAG GGTTTAGGGA
2550
CACACTCATT CATGAAAACC AGAGAGG
G
C
G
G
G
G
C
G
C
C
G
T
G
G
C
G
C
A
C
A
C
C
T
2600 |
REPEAT
G
T
G
G
T
C
C
C
A
G
C
A
C
T
T
T
G
G
G
A
G
G
C
C
G
G
G
A
C
G
G
G
A
G
G
A
T
C
G
C
T
T
G
A
T
C
C
C
A
G
2650
G
A
G
T
T
C
G
A
G
G
C
T
G
C
A
G
T
G
A
A
C
G
T
T
G
A
T
C
G
C
A
C
C
A
C
T
G
C
A
C
A
C
A
A
G
C
C
T
A
G
2700
G
C
G
A
C
A
G
A
G
A
G
G
T
C
C
T
G
C
C
T
C
T
T
T
A
A
A
A
A
C
A
A
A
A
A
C
A
A
A
A
C
A
A
A
A
A
C
A
A
A
2750 |
var(2741):[:0.65]
A
AAAAACCCT TTTTTTAAAT TAAAAATCAG ATCTACCCAA ATGGTCTACA
2800
TTTGGACCCA CAAACCGG
G
T
A
C
C
C
A
G
G
T
T
A
C
C
A
G
G
C
G
A
G
A
C
A
A
C
T
G
C
A
G
T
2850 |
NOT SCANNED
T
A
T
A
C
C
T
C
T
C
A
G
A
A
G
C
C
C
A
C
A
A
G
A
T
T
T
G
A
A
A
G
A
A
A
A
A
A
A
A
A
A
A
A
G
C
C
T
C
A
2900
G
G
G
G
T
T
T
C
G
G
T
G
A
A
T
G
T
T
G
T
GTGGACTTCC GTGAGACAGA CGTTTGATGT
2950
GACTGAGTTC AAGGCTGATA CAGCCCAGAA CCAGGACAAG GAGAGAACTG
3000
CTCGTTTCC
G
GGAGCAGACT TCCTACCGGG AGCACTGCAG TCACTTCTGA
3050 |
var(3010):[A:0.01]
ACAGGTTTGG AGGAAGTTGA TCATTTGGAG AGAAGTGACC TAGCTAGTTA
3100
GAGAAGTGGA AACTATCCTA GTTGAAGGAA TCTATTCTAG AAACTCATCA
3150
TTGGAGGAAT TCACAGAGAA ACCTTACAGG GAAGGAAAAA ATAAATCATT
3200
TTAAGTTTTA AAGAGTTGAC ATGGGAGA
G
G
C
A
A
A
A
T
G
G
A
G
A
T
A
G
T
T
C
A
A
A
3250 |
REPEAT
G
T
T
A
C
A
A
G
G
A
A
A
A
C
A
T
T
T
C
C
A
A
T
T
A
A
T
G
T
G
A
G
G
A
G
G
A
A
T
C
T
T
A
T
A
T
T
G
G
G
3300
A
G
A
G
C
T
C
C
C
A
A
A
A
C
T
A
A
A
T
G
G
C
C
A
C
T
T
G
G
G
A
A
G
G
C
A
G
T
A
C
A
T
T
C
C
C
A
G
A
C
3350
A
A
A
A
G
T
A
C
C
A
G
G
C
A
T
A
T
G
T
G
A
G
C
A
C
T
T
G
G
T
G
A
G
G
A
T
G
T
T
A
T
A
A
A
G
G
A
G
A
C
3400
T
C
A
A
A
C
T
T
A
A
G
G
T
G
A
G
T
G
G
G
T
T
G
A
A
C
A
A
A
G
T
G
C
A
T
A
T
A
A
G
A
T
C
C
T
T
C
T
C
A
3450
C
A
C
C
A
A
A
A
G
T
C
T
G
T
G
A
T
T
GT GAGAAGTAGC TTTCATATCA TGTAAGTTGA
3500
GATACATAAG AGGTTTAGAA ACCACTCTGG AGTTGAGGGA AGGAGAAATA
3550
ACTTTTGATT GGGAGTAAAT ACTCAGGGCA AAAGTGACCA GAAGGTCTGG
3600
GATCTTGAAC ACTGAAAAAG GAAAGATCTT GAACACTGAA GGGGGAACCA
3650
TGTGAGAATG GTCCTGTGAG AATGGTTAGT TTTTGATAT
A
T
T
A
A
T
T
C
T
C
T
3700 |
REPEAT
C
A
A
C
A
A
A
C
C
A
T
T
T
G
A
A
T
A
C
T
T
A
A
T
A
T
G
G
T
C
C
A
A
A
C
T
C
T
G
G
G
C
T
A
G
G
A
G
C
T
3750
G
G
A
A
C
A
G
C
A
A
A
G
A
C
G
A
A
C
C
A
G
G
A
C
A
A
A
A
A
T
C
C
C
T
G
A
C
T
C
A
T
G
G
A
G
T
T
C
T
T
3800 |
var(3784):[A:0.03]
|
var(3800):[A:0.02]
C
A
G
T
T
T
A
A
T
T
A
T
G
A
G
A
C
A
G
A
C
A
C
A
T
G
A
G
C
A
G
A
T
A
G
T
T
A
A
G
A
T
A
T
G
T
G
A
T
A
3850
A
G
A
T
G
G
A
G
A
T
A
GAACACAGA AGCGAGGCGT CTAACCAAGG AGAGGTGTCA
3900
GAAAAAAGCT CTTCCTAGAG CAATCTAGGG TTGGATCTAA GAGCCACCTG
3950
AGTAAAGGCA TGGAGGCAAA AAATAGCACA ATTGATGCAG AGAAATATAA
4000
GAAGTTGAGT GTTACC
T
C
A
T
T
T
A
T
T
C
A
A
C
A
A
A
T
A
A
T
C
T
G
T
G
T
A
A
T
G
C
C
T
G
4050 |
REPEAT
T
C
A
T
G
T
G
C
C
A
G
G
C
A
C
T
A
T
T
C
C
A
G
G
C
T
C
T
T
G
A
A
A
A
A
T
A
C
T
A
G
T
G
A
A
A
A
A
A
A
4100 |
var(4094):[:0.98]
A
A
C
A
A
A
G
A
T
C
C
C
T
G
C
C
C
T
C
G
T
G
G
A
G
T
A
C
A
C
A
T
T
A
T
T
G
G
G
A
T
G
G
G
A
G
G
G
C
A
4150
G
G
G
G
A
A
G
C
A
A
A
C
A
C
A
A
T
A
A
A
T
T
T
T
A
G
T
A
T
T
C
T
A
G
A
A
G
G
T
G
G
T
A
C
G
T
G
C
A
G
4200
T
G
G
A
A
C
G
A
G
A
A
A
A
G
T
A
A
A
A
G
C
C
A
G
G
T
A
A
G
G
G
A
G
T
G
T
A
A
G
G
C
G
G
G
G
A
A
G
G
A
4250
G
T
T
G
C
A
G
A
G
A
A
A
A
G
T
T
G
C
G
T
A
A
T
G
A
A
T
A
G
A
A
T
T
C
T
A
G
G
C
T
T
T
G
T
T
G
A
G
A
T
4300
G
A
C
A
T
C
T
G
A
T
C
A
A
A
G
A
T
T
T
G
A
G
T
G
A
A
A
T
G
A
G
G
G
A
G
T
T
A
G
C
T
A
T
G
A
G
A
A
T
A
4350
C
C
T
G
G
A
A
G
A
A
G
A
G
T
G
T
T
T
G
A
A
G
C
A
G
A
G
A
A
A
A
T
C
C
A
G
T
G
C
A
G
T
G
G
C
C
T
T
A
T
4400 |
var(4374):[G:0.05]
G
G
C
A
G
G
A
A
T
G
T
G
T
G
G
G
A
A
G
G
C
A
T
C
A
A
G
A
A
A
G
A
G
C
A
A
G
G
A
A
A
C
C
A
G
C
G
T
A
A
4450 |
var(4443):[T:0.26]
C
T
G
G
A
C
T
G
G
G
G
T
G
A
G
T
G
A
G
T GAAGATGA
G
G
A
A
G
G
T
T
T
T
A
A
G
T
A
A
A
G
T
A
T
A
4500 |
REPEAT
T
G
A
T
C
T
A
A
C
T
T
A
C
A
T
T
T
T
A
A
A
A
G
T
A
T
A
C
T
A
G
G
C
C
A
G
G
C
C
C
G
G
T
G
G
C
T
C
A
C
4550 |
var(4514):[G:0.03]
|
REPEAT
C
C
T
G
T
A
A
T
C
C
C
A
G
C
A
C
T
T
T
A
G
G
A
G
G
C
C
A
A
G
G
C
A
G
G
C
A
G
A
T
C
A
T
T
T
G
A
A
G
T
4600
C
A
G
G
A
G
T
T
C
C
A
G
C
A
G
C
C
T
G
A
C
C
A
A
C
A
T
G
G
T
G
A
A
A
C
C
C
C
A
T
C
T
C
T
A
C
T
A
A
A
4650
A
A
T
A
C
A
A
A
A
A
A
A
A
T
T
A
G
C
C
A
G
G
C
A
T
G
G
T
G
G
C
G
T
A
T
G
C
C
T
G
T
A
A
T
C
T
C
A
G
C
4700
T
A
C
T
C
G
G
G
A
G
G
C
T
G
A
G
G
C
A
G
G
A
G
A
A
T
C
A
C
T
G
G
A
A
C
C
G
G
A
G
A
G
A
C
A
G
A
G
G
T
4750
T
G
A
G
G
T
A
A
G
C
C
A
A
A
A
T
C
A
C
C
C
C
A
C
T
G
C
A
C
T
C
C
A
G
C
C
T
G
G
G
T
G
A
C
A
A
A
G
T
G
4800
A
G
C
C
T
C
C
G
T
C
T
C
A
A
A
A
A
C
A
A
A
C
A
A
A
A
A
T
A
T
A
C
T
A
G
C
T
G
C
T
A
T
G
T
T
A
A
C
A
G
4850 |
REPEAT
T
A
G
A
T
T
G
G
T
A
G
G
G
A
A
G
G
A
C
A
G
A
A
G
G
G
G
A
T
T
G
C
T
G
C
A
G
G
G
G
C
A
A
A
G
G
T
A
A
A
4900 |
var(4858):[C:0.01]
A
C
C
A
A
G
G
A
G
A
C
C
A
A
T
T
G
C
A
G
T
A
A
T
C
T
G
G
G
C
A
A
G
A
A
A
T
G
A
T
G
A
T
G
G
T
G
G
C
T
4950
G
G
T
G
G
T
A
G
C
A
A
A
G
C
A
G
G
T
A
A
T
A
A
G
A
A
G
T
G
G
C
C
A
C
A
T
T
T
G
G
G
A
T
G
T
A
A
T
A
T
5000
T
T
T
G
A
A
A
G
T
A
G
C
A
C
C
A
A
C
A
A
G