Site CDNA-Pos Description Allele1 AD-freq ED-freq Total-freq Allele2 AD-freq ED-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 000251 00000 ------------ A 0.79 1.00 0.90 T 0.21 0.00 0.10 0000 --- --- --- --- 000957 00000 ------------ A 0.94 1.00 0.97 G 0.06 0.00 0.03 0000 --- --- --- --- 001029 00000 ------------ A 0.93 1.00 0.97 T 0.07 0.00 0.03 0000 --- --- --- --- 001225 00000 ------------ - 0.02 0.00 0.01 + 0.98 1.00 0.99 0000 --- --- --- --- 001475 00000 ------------ C 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 001501 00000 ------------ A 0.71 1.00 0.85 G 0.29 0.00 0.15 0000 --- --- --- --- 001555 00000 ------------ C 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 001738 00000 ------------ - 0.06 0.00 0.03 + 0.94 1.00 0.97 0000 --- --- --- --- 001783 00000 ------------ C 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 001866 00000 ------------ G 0.94 0.91 0.93 A 0.06 0.09 0.07 0000 --- --- --- --- 001888 00000 ------------ C 0.96 1.00 0.98 G 0.04 0.00 0.02 0000 --- --- --- --- 001927 00000 ------------ C 0.70 1.00 0.83 A 0.30 0.00 0.17 0000 --- --- --- --- 002359 00000 ------------ T 1.00 0.97 0.99 C 0.00 0.03 0.01 0000 --- --- --- --- 002999 00000 ------------ T 0.77 1.00 0.88 C 0.23 0.00 0.12 0000 --- --- --- --- 003029 00000 ------------ - 0.77 1.00 0.88 + 0.23 0.00 0.12 0000 --- --- --- --- 003097 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 003434 00000 ------------ G 0.90 1.00 0.95 C 0.10 0.00 0.05 0000 --- --- --- --- 003479 00000 ------------ A 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 003743 00000 ------------ G 0.94 1.00 0.97 A 0.06 0.00 0.03 0000 --- --- --- --- 003912 00000 ------------ A 0.96 0.48 0.72 G 0.04 0.52 0.28 0000 --- --- --- --- 003975 00000 ------------ G 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 004211 00000 ------------ - 0.02 0.00 0.01 + 0.98 1.00 0.99 0000 --- --- --- --- 004319 00000 ------------ G 0.79 1.00 0.89 A 0.21 0.00 0.11 0000 --- --- --- --- 004324 00000 ------------ A 0.50 0.91 0.70 C 0.50 0.09 0.30 0000 --- --- --- --- 004346 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 004759 00000 ------------ G 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 005190 00000 ------------ C 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 005323 00000 ------------ A 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 005428 00000 ------------ T 0.94 1.00 0.97 G 0.06 0.00 0.03 0000 --- --- --- --- 005744 00000 ------------ A 0.94 1.00 0.97 G 0.06 0.00 0.03 0000 --- --- --- --- 006165 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 006174 00000 ------------ C 0.96 0.93 0.94 T 0.04 0.07 0.06 0000 --- --- --- --- 006292 00000 ------------ G 0.50 0.93 0.70 A 0.50 0.07 0.30 0000 --- --- --- --- 006393 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 007206 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 007966 00000 ------------ C 0.94 0.45 0.71 T 0.06 0.55 0.29 0000 --- --- --- --- 008542 00000 ------------ C 0.94 1.00 0.97 T 0.06 0.00 0.03 0000 --- --- --- --- 008882 00000 ------------ A 0.94 1.00 0.97 C 0.06 0.00 0.03 0000 --- --- --- --- 009320 00000 ------------ T 0.79 1.00 0.89 C 0.21 0.00 0.11 0000 --- --- --- --- 009363 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 009700 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 009783 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 010226 00000 ------------ G 0.93 0.45 0.70 A 0.07 0.55 0.30 0000 --- --- --- --- 010465 00000 ------------ G 0.93 0.90 0.92 T 0.07 0.10 0.08 0000 --- --- --- --- 010643 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 010657 00000 ------------ G 0.79 1.00 0.89 A 0.21 0.00 0.11 0000 --- --- --- --- 010672 00000 ------------ T 0.79 1.00 0.89 G 0.21 0.00 0.11 0000 --- --- --- --- 010791 00000 ------------ G 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 010808 00000 ------------ - 0.44 0.91 0.66 + 0.56 0.09 0.34 0000 --- --- --- --- 010886 00000 ------------ G 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 010921 00000 ------------ C 0.88 1.00 0.93 T 0.12 0.00 0.07 0000 --- --- --- --- 011068 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 011244 00000 ------------ - 0.06 0.10 0.08 + 0.94 0.90 0.92 0000 --- --- --- --- 011314 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 011459 00000 ------------ A 0.83 1.00 0.91 G 0.17 0.00 0.09 0000 --- --- --- --- 011898 00000 ------------ A 1.00 0.90 0.95 G 0.00 0.10 0.05 0000 --- --- --- --- 011962 00000 ------------ A 1.00 0.90 0.95 G 0.00 0.10 0.05 0000 --- --- --- --- 012127 00000 ------------ A 0.76 1.00 0.88 G 0.24 0.00 0.12 0000 --- --- --- --- 012184 00000 ------------ C 0.89 1.00 0.94 T 0.11 0.00 0.06 0000 --- --- --- --- 012538 00699 SYNON T 0.98 1.00 0.99 C 0.02 0.00 0.01 0204 TAT TAC TYR(Y) TYR(Y) 012694 00000 ------------ T 0.79 1.00 0.89 G 0.21 0.00 0.11 0000 --- --- --- --- 013009 00000 ------------ C 0.79 1.00 0.89 T 0.21 0.00 0.11 0000 --- --- --- --- 013179 00000 ------------ A 0.94 1.00 0.97 G 0.06 0.00 0.03 0000 --- --- --- --- 013497 00889 NON-SYN A 0.68 0.61 0.65 G 0.32 0.39 0.35 0268 ATA GTA ILE(I) VAL(V) 014018 00000 ------------ G 0.94 0.91 0.93 A 0.06 0.09 0.07 0000 --- --- --- --- 014635 00000 ------------ G 0.94 1.00 0.97 A 0.06 0.00 0.03 0000 --- --- --- --- 014883 00000 ------------ C 0.94 0.45 0.71 G 0.06 0.55 0.29 0000 --- --- --- --- 014972 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 015239 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 015498 00000 ------------ C 0.90 1.00 0.95 A 0.10 0.00 0.05 0000 --- --- --- --- 015762 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 015958 00000 ------------ T 0.77 1.00 0.88 C 0.23 0.00 0.12 0000 --- --- --- --- 015994 00000 ------------ C 0.79 1.00 0.89 T 0.21 0.00 0.11 0000 --- --- --- --- 016008 00000 ------------ C 0.94 0.91 0.93 T 0.06 0.09 0.07 0000 --- --- --- --- 016979 00000 ------------ - 0.04 0.00 0.02 + 0.96 1.00 0.98 0000 --- --- --- --- 019006 00000 ------------ G 0.62 0.61 0.62 A 0.38 0.39 0.38 0000 --- --- --- --- 019096 00000 ------------ A 0.92 1.00 0.96 G 0.08 0.00 0.04 0000 --- --- --- --- 019912 00000 ------------ A 0.96 1.00 0.98 G 0.04 0.00 0.02 0000 --- --- --- --- 019992 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 020381 00000 ------------ - 0.21 0.00 0.11 + 0.79 1.00 0.89 0000 --- --- --- --- 020387 00000 ------------ C 0.65 0.61 0.63 T 0.35 0.39 0.37 0000 --- --- --- --- 020454 00000 ------------ G 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 020563 00000 ------------ C 0.77 1.00 0.88 T 0.23 0.00 0.12 0000 --- --- --- --- 021350 00000 ------------ G 0.90 1.00 0.95 A 0.10 0.00 0.05 0000 --- --- --- --- 021573 00000 ------------ C 0.93 0.91 0.92 T 0.07 0.09 0.08 0000 --- --- --- --- 021711 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 021734 00000 ------------ G 0.78 1.00 0.89 T 0.22 0.00 0.11 0000 --- --- --- --- 022391 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 022395 00000 ------------ C 0.94 1.00 0.97 T 0.06 0.00 0.03 0000 --- --- --- --- 022427 00000 ------------ A 0.90 1.00 0.94 G 0.10 0.00 0.06 0000 --- --- --- --- 022981 00000 ------------ T 1.00 0.98 0.99 C 0.00 0.02 0.01 0000 --- --- --- --- 022985 00000 ------------ T 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 023010 00000 ------------ G 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 023146 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 023147 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 023463 00000 ------------ C 0.92 1.00 0.96 G 0.08 0.00 0.04 0000 --- --- --- --- 023758 00000 ------------ - 0.02 0.00 0.01 + 0.98 1.00 0.99 0000 --- --- --- --- 023889 00000 ------------ - 0.96 1.00 0.98 + 0.04 0.00 0.02 0000 --- --- --- --- 023975 00000 ------------ C 0.96 0.48 0.72 T 0.04 0.52 0.28 0000 --- --- --- --- 023992 00000 ------------ C 0.79 1.00 0.89 T 0.21 0.00 0.11 0000 --- --- --- --- 024173 00000 ------------ C 0.71 0.64 0.68 G 0.29 0.36 0.32 0000 --- --- --- --- 024561 00000 ------------ G 0.96 0.91 0.93 A 0.04 0.09 0.07 0000 --- --- --- --- 024616 00000 ------------ - 0.23 0.00 0.11 + 0.77 1.00 0.89 0000 --- --- --- --- 024895 00000 ------------ G 0.91 1.00 0.96 A 0.09 0.00 0.04 0000 --- --- --- --- 025424 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 025434 00000 ------------ T 0.77 1.00 0.89 A 0.23 0.00 0.11 0000 --- --- --- --- 025720 00000 ------------ T 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 025785 00000 ------------ C 0.94 1.00 0.97 T 0.06 0.00 0.03 0000 --- --- --- --- 025827 00000 ------------ T 0.44 0.91 0.66 C 0.56 0.09 0.34 0000 --- --- --- --- 026227 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 026632 00000 ------------ - 0.02 0.00 0.01 + 0.98 1.00 0.99 0000 --- --- --- --- 026849 00000 ------------ G 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 026904 00000 ------------ - 0.02 0.00 0.01 + 0.98 1.00 0.99 0000 --- --- --- --- 027073 01545 SYNON C 0.98 0.89 0.93 T 0.02 0.11 0.07 0486 AGC AGT SER(S) SER(S) 027591 00000 ------------ T 0.94 1.00 0.97 A 0.06 0.00 0.03 0000 --- --- --- --- 027667 00000 ------------ G 0.94 0.91 0.92 A 0.06 0.09 0.08 0000 --- --- --- --- 027707 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 027840 00000 ------------ G 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 028086 00000 ------------ A 0.61 0.64 0.62 C 0.39 0.36 0.38 0000 --- --- --- --- 028134 00000 ------------ A 0.80 1.00 0.90 G 0.20 0.00 0.10 0000 --- --- --- --- 028699 00000 ------------ T 0.93 1.00 0.97 G 0.07 0.00 0.03 0000 --- --- --- --- 028715 00000 ------------ A 0.77 1.00 0.88 G 0.23 0.00 0.12 0000 --- --- --- --- 028856 00000 ------------ T 0.80 1.00 0.90 A 0.20 0.00 0.10 0000 --- --- --- --- 029161 00000 ------------ C 0.92 1.00 0.96 T 0.08 0.00 0.04 0000 --- --- --- --- 029173 00000 ------------ A 0.77 1.00 0.88 G 0.23 0.00 0.12 0000 --- --- --- --- 029995* 030214 00000 ------------ C 1.00 0.93 0.97 T 0.00 0.07 0.03 0000 --- --- --- --- 030419 00000 ------------ A 0.69 0.61 0.65 G 0.31 0.39 0.35 0000 --- --- --- --- 031243 00000 ------------ C 0.93 0.93 0.93 T 0.07 0.07 0.07 0000 --- --- --- --- 031749 00000 ------------ A 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 032152 00000 ------------ C 0.90 1.00 0.95 T 0.10 0.00 0.05 0000 --- --- --- --- 032345 00000 ------------ G 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 032527 00000 ------------ A 1.00 0.98 0.99 C 0.00 0.02 0.01 0000 --- --- --- --- 032588 00000 ------------ T 0.94 0.91 0.92 C 0.06 0.09 0.08 0000 --- --- --- --- 032615 00000 ------------ G 1.00 0.91 0.96 A 0.00 0.09 0.04 0000 --- --- --- --- 032770 00000 ------------ - 0.02 0.00 0.01 + 0.98 1.00 0.99 0000 --- --- --- --- 032818 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 032897 00000 ------------ T 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 033153 00000 ------------ A 0.77 1.00 0.88 G 0.23 0.00 0.12 0000 --- --- --- --- 033252 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 033460 00000 ------------ A 0.94 1.00 0.97 G 0.06 0.00 0.03 0000 --- --- --- --- 033708 00000 ------------ T 1.00 0.98 0.99 C 0.00 0.02 0.01 0000 --- --- --- --- 033722 00000 ------------ - 0.00 0.05 0.02 + 1.00 0.95 0.98 0000 --- --- --- --- 034363 00000 ------------ T 0.78 1.00 0.89 C 0.22 0.00 0.11 0000 --- --- --- --- 034389 00000 ------------ G 0.93 0.91 0.92 A 0.07 0.09 0.08 0000 --- --- --- --- 034399 00000 ------------ T 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 035486* 035773 00000 ------------ C 0.43 0.90 0.66 T 0.57 0.10 0.34 0000 --- --- --- --- 035827 00000 ------------ - 0.06 0.00 0.03 + 0.94 1.00 0.97 0000 --- --- --- --- 036137 00000 ------------ G 0.79 1.00 0.89 A 0.21 0.00 0.11 0000 --- --- --- --- 036184 00000 ------------ A 0.94 1.00 0.97 T 0.06 0.00 0.03 0000 --- --- --- --- 036383 00000 ------------ T 0.50 0.90 0.69 A 0.50 0.10 0.31 0000 --- --- --- --- 037038 00000 ------------ G 0.93 0.91 0.92 A 0.07 0.09 0.08 0000 --- --- --- --- 037050 00000 ------------ T 0.95 1.00 0.98 C 0.05 0.00 0.02 0000 --- --- --- --- 037680 00000 ------------ T 0.95 0.45 0.70 G 0.05 0.55 0.30 0000 --- --- --- --- 038718 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 038983 00000 ------------ A 0.94 1.00 0.97 G 0.06 0.00 0.03 0000 --- --- --- --- 039399 00000 ------------ A 0.96 0.91 0.93 G 0.04 0.09 0.07 0000 --- --- --- --- 039987 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 041000 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 041277 00000 ------------ C 0.50 0.91 0.71 T 0.50 0.09 0.29 0000 --- --- --- --- 041954 00000 ------------ A 0.80 1.00 0.90 C 0.20 0.00 0.10 0000 --- --- --- --- 042399 02694 3' UTR G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 042698 02993 3' UTR - 0.00 0.04 0.02 + 1.00 0.96 0.98 0000 --- --- --- --- 043648 00000 ------------ G 0.45 0.93 0.69 A 0.55 0.07 0.31 0000 --- --- --- --- 044940 00000 ------------ G 0.78 1.00 0.89 A 0.23 0.00 0.11 0000 --- --- --- --- 044953 00000 ------------ T 0.95 0.93 0.94 C 0.05 0.07 0.06 0000 --- --- --- --- NOTE: AD-freq: African Descent frequency ED-freq: European Descent frequency NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 001225: AG 001738: A 003029: TCC 004211: T 010808: T 011244: C 016979: CT 020381: A 023758: T 023889: A 024616: T 026632: T 026904: TTG 032770: A 033722: CTCA 035827: CTTT 042698: TATTT The following site(s) was observed to have three alleles. The frequency for each allele is given below: Site Allele1 AD-freq ED-freq Total-freq Allele2 AD-freq ED-freq Total-freq Allele3 AD-freq ED-freq Total-freq 029995 A 0.85 1.00 0.93 G 0.04 0.00 0.02 T 0.10 0.00 0.05 035486 A 0.91 0.89 0.90 C 0.02 0.00 0.01 G 0.07 0.11 0.09