LOCUS CEBPA 6293 bp DNA linear PRI 23-JUL-2007 DEFINITION Homo sapiens CCAAT/enhancer binding protein (C/EBP), alpha (CEBPA) gene, complete cds. ACCESSION CEBPA VERSION tmp KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 6293) AUTHORS Rieder,M.J., Johanson,E.J., da Ponte,S.H., Hastings,N.C., Ahearn,M.O., Bertucci,C.B., Wong,M.W., Yi,Q. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (23-JUL-2007) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA COMMENT To cite this work please use: SeattleSNPs. NHLBI HL66682 Program for Genomic Applications, UW-FHCRC, Seattle, WA (URL: http://pga.gs.washington.edu). FEATURES Location/Qualifiers source 1..6293 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" variation 59 /frequency="0.02" /replace="T" variation 67 /frequency="0.23" /replace="T" variation 201 /frequency="0.02" /replace="A" variation 257 /frequency="0.01" /replace="G" misc_feature 588..1445 /note="Region not scanned for variation" variation 1618 /frequency="0.02" /replace="A" variation 1662 /frequency="0.01" /replace="G" variation 1739 /frequency="0.01" /replace="T" variation 1747 /frequency="0.01" /replace="T" variation 1861 /frequency="0.01" /replace="T" variation 1878 /frequency="0.05" /replace="T" variation 1949 /frequency="0.01" /replace="A" gene 1988..4372 /gene="CEBPA" mRNA 1988..4372 /gene="CEBPA" /product="CEBPA" CDS 1988..3064 /gene="CEBPA" /codon_start=1 /product="CCAAT/enhancer binding protein (C/EBP), alpha" /translation="MESADFYEAEPRPPMSSHLQSPPHAPSSAAFGFPRGAGPAQPPA PPAAPEPLGGICEHETSIDISAYIDPAAFNDEFLADLFQHSRQQEKAKAAVGPTGGGG GGDFDYPGAPAGPGGAVMPGGAHGPPPGYGCAAAGYLDGRLEPLYERVGAPALRPLVI KQEPREEDEAKQLALAGLFPYQPPPPPPPSHPHPHPPPAHLAAPHLQFQIAHCGQTTM HLQPGHPTPPPTPVPSPHPAPALGAAGLPGPGSALKGLGAAHPDLRASGGSGAGKAKK SVDKNSNEYRVRRERNNIAVRKSRDKAKQRNVETQQKVLELTSDNDRLRKRVEQLSRE LDTLRGIFRQLPESSLVKAMGNCA" variation 2677 /gene="CEBPA" /frequency="0.18" /replace="T" variation 3084 /gene="CEBPA" /frequency="0.01" /replace="T" variation 3133 /gene="CEBPA" /frequency="0.01" /replace="A" variation 3501 /gene="CEBPA" /frequency="0.27" /replace="G" variation 3779 /gene="CEBPA" /frequency="0.24" /replace="G" repeat_region 3825..3953 /rpt_family="L2" /rpt_type=dispersed variation 3901 /gene="CEBPA" /frequency="0.01" /replace="A" variation 4181 /gene="CEBPA" /frequency="0.25" /replace="T" variation 4191 /gene="CEBPA" /frequency="0.01" /replace="G" variation 4280 /gene="CEBPA" /frequency="0.01" /replace="A" variation 4673 /frequency="0.24" /replace="C" variation 4752 /frequency="0.07" /replace="T" variation 4772 /frequency="0.23" /replace="T" misc_feature 4797..4982 /note="Region not scanned for variation" variation 5114 /frequency="0.24" /replace="G" variation 5265 /frequency="0.01" /replace="T" variation 5380 /frequency="0.01" /replace="A" variation 5399 /frequency="0.01" /replace="A" variation 5407 /frequency="0.24" /replace="T" variation 5629 /frequency="0.20" /replace="A" variation 5700 /frequency="0.20" /replace="A" variation 5840 /frequency="0.74" /replace="" variation 5874 /frequency="0.03" /replace="T" variation 5912 /frequency="0.42" /replace="C" variation 6058 /frequency="0.10" /replace="A" variation 6091 /frequency="0.02" /replace="T" repeat_region 6261..6293 /rpt_family="L2" /rpt_type=dispersed BASE COUNT 1122 a 2078 c 1967 g 1126 t ORIGIN 1 atgtacagtg gcgtttcttt gttcctaggt aggaaaagcc attagtttta gcaccgcaga 61 aaaaaacgca aatcgctctt ggtgcttttt gatttccgtc caggtctccc tccacaggtg 121 aatgctatat gaatgggtcc tgcatttggc tcagcaagca gctctccggc tcacatcggg 181 atatttattt aacgtatctg gtttttactc cctcccgtcc aaaagcgtca agctaaaaat 241 atcttgttta tgagctctgg accgaaaacg aagcagttgg gctattaatc actgggacta 301 tgttgaatag gaacttgatt aaagcgcagt gtgcgttgcc cagatgaaac tgcttcttta 361 ctgcgatcgt cgtggaagct cggggctctc cagcggtgtt tttagctgtg ccccctccgg 421 ggctcctggg cgggtcgtgg cgccttgcca ggcctaaggc cactgtcggt gaagggggtc 481 ttccctcacc tgtaggcaag cgcgcctcta gccgggacgc aggcggcgtc aggcctcagc 541 gccagtggcg aggggcggcg cgggcaagga caggagacac ttgagggctc ccaagactcc 601 atctgggccc agctgacggt ccgtagccgc caccccggcc ccggtaaaga atgcgaggga 661 cgcacgtggc tgggggtctc ggtggcaagc tccttccccc gccgcggtga gagcattagc 721 tgccgcactc aaggggcccc agggcctggc cgcctcggtc cctaggatcc cggggactac 781 agcgcccggc gaaccactgg gcagagttct ccctgtgcgt gctcggacct ggcagcccgg 841 cggcctggac accctcgctc ccgccgttgg cgcccacctg aatggggagg cgggggagga 901 agcggtggct tcgggcctcg agggctgcgg cccccgcctc ggaatcccgg ccccagagtt 961 aagtttgtct cctccctcgg tgcgcccctc cccgtgctcg ccccggcgtc cagctccgct 1021 agtctggggg gccccgcggt cccgcaggaa aaaaaatcgg cgactccacg ccgggtaaca 1081 gcgccggccc cgcgcgccta gcaagccgcg cgctccgacc tggagaagta attataaaga 1141 aagttttcca gcccgggcgg atcgaccggc caggtcctcc aggctcccgg gccgaggccg 1201 cctccgctcc ccgcggggtc ctagcgccct gcgcggcgcc gcccatggga ccccggcgtc 1261 ctccgagagg tacctctgcg cggaatcaca ggggtagcct ggagatcaga gctaggagac 1321 gcagagccac cgcgctcagg acctctccgc gcgtcccaaa cggcccccca ccggccccag 1381 ccccgctgct ctgcgctgca gcctccccgg gacgcgggtc cgggacaggc ctggttctgg 1441 ctttgaaaga gaatccgcgc cccagcagct caagaccaag actcgccctc cgccccccac 1501 ccctaccccg tgcagcctcg ggatactcct gggctcccgg ccgtggctgg atacgggcgc 1561 ctagggcagg caggaggagg gggcccccgc taccgaccac gtgggcgcgg gggcgacggc 1621 cgggccgggg gcggagcttg gagcgagcgc cgcggctctg ctgggcgcgc tggaggcggt 1681 gggcgttgcg ccgcggcctg cctggggagc gcggcgctgt gccgcgctgg ttcgccgccc 1741 catgccggcc gcgcgctagg acccagcagg cgccgcgccg ccgcagcccg gggacagagg 1801 ccgcctcgga ctctaggggg cgacgcggcc tgccgggtat aaaagctggg ccggcgcggg 1861 ccgggccatt cgcgacccgg aggtgcgcgg gcgcgggcga gcagggtctc cgggtgggcg 1921 gcggcgacgc cccgcgcagg ctggaggccg ccgaggctcg ccatgccggg agaactctaa 1981 ctcccccatg gagtcggccg acttctacga ggcggagccg cggcccccga tgagcagcca 2041 cctgcagagc cccccgcacg cgcccagcag cgccgccttc ggctttcccc ggggcgcggg 2101 ccccgcgcag cctcccgccc cacctgccgc cccggagccg ctgggcggca tctgcgagca 2161 cgagacgtcc atcgacatca gcgcctacat cgacccggcc gccttcaacg acgagttcct 2221 ggccgacctg ttccagcaca gccggcagca ggagaaggcc aaggcggccg tgggccccac 2281 gggcggcggc ggcggcggcg actttgacta cccgggcgcg cccgcgggcc ccggcggcgc 2341 cgtcatgccc gggggagcgc acgggccccc gcccggctac ggctgcgcgg ccgccggcta 2401 cctggacggc aggctggagc ccctgtacga gcgcgtcggg gcgccggcgc tgcggccgct 2461 ggtgatcaag caggagcccc gcgaggagga tgaagccaag cagctggcgc tggccggcct 2521 cttcccttac cagccgccgc cgccgccgcc gccctcgcac ccgcacccgc acccgccgcc 2581 cgcgcacctg gccgccccgc acctgcagtt ccagatcgcg cactgcggcc agaccaccat 2641 gcacctgcag cccggtcacc ccacgccgcc gcccacgccc gtgcccagcc cgcaccccgc 2701 gcccgcgctc ggtgccgccg gcctgccggg ccctggcagc gcgctcaagg ggctgggcgc 2761 cgcgcacccc gacctccgcg cgagtggcgg cagcggcgcg ggcaaggcca agaagtcggt 2821 ggacaagaac agcaacgagt accgggtgcg gcgcgagcgc aacaacatcg cggtgcgcaa 2881 gagccgcgac aaggccaagc agcgcaacgt ggagacgcag cagaaggtgc tggagctgac 2941 cagtgacaat gaccgcctgc gcaagcgggt ggaacagctg agccgcgaac tggacacgct 3001 gcggggcatc ttccgccagc tgccagagag ctccttggtc aaggccatgg gcaactgcgc 3061 gtgaggcgcg cggctgtggg accgccctgg gccagcctcc ggcggggacc cagggagtgg 3121 tttggggtcg ccggatctcg aggcttgccc gagccgtgcg agccaggact aggagattcc 3181 ggtgcctcct gaaagcctgg cctgctccgc gtgtcccctc ccttcctctg cgccggactt 3241 ggtgcgtcta agatgagggg gccaggcggt ggcttctccc tgcgaggagg ggagaattct 3301 tggggctgag ctgggagccc ggcaactcta gtatttagga taaccttgtg ccttggaaat 3361 gcaaactcac cgctccaatg cctactgagt agggggagca aatcgtgcct tgtcatttta 3421 tttggaggtt tcctgcctcc ttcccgaggc tacagcagac ccccatgaga gaaggagggg 3481 agcaggcccg tggcaggagg agggctcagg gagctgagat cccgacaagc ccgccagccc 3541 cagccgctcc tccacgcctg tccttagaaa ggggtggaaa catagggact tggggcttgg 3601 aacctaaggt tgttccccta gttctacatg aaggtggagg gtctctagtt ccacgcctct 3661 cccacctccc tccgcacaca ccccacccca gcctgctata ggctgggctt ccccttgggg 3721 cggaactcac tgcgatgggg gtcaccaggt gaccagtggg agcccccacc ccgagtcaca 3781 ccagaaagct aggtcgtggg tcagctctga ggatgtatac ccctggtggg agagggagac 3841 ctagagatct ggctgtgggg cgggcatggg gggtgaaggg ccactgggac cctcagcctt 3901 gtttgtactg tatgccttca gcattgccta ggaacacgaa gcacgatcag tccatcccag 3961 agggaccgga gttatgacaa gctttccaaa tattttgctt tatcagccga tatcaacact 4021 tgtatctggc ctctgtgccc cagcagtgcc ttgtgcaatg tgaatgtgcg cgtctctgct 4081 aaaccaccat tttatttggt ttttgttttg ttttggtttt gctcggatac ttgccaaaat 4141 gagactctcc gtcggcagct gggggaaggg tctgagactc cctttccttt tggttttggg 4201 attacttttg atcctggggg accaatgagg tgaggggggt tctcctttgc cctcagcttt 4261 ccccagcccc tccggcctgg gctgcccaca aggcttgtcc cccagaggcc ctggctcctg 4321 gtcgggaagg gaggtggcct cccgccaacg catcactggg gctgggagca gggaaggacg 4381 gcttggttct cttcttttgg ggagaacgta gagtctcact ctagatgttt tatgtattat 4441 atctataata taaacatatc aaagtcaatg tcggtgtctt tttaaaacca gaaagaagct 4501 acttccaagg ttgtctgtgg gccaggtcac atttgtaaat aatacagcat tttccctggc 4561 ggcaatcctg actttcatga gctctccatc catcctgagc ccctcttacc ctaagggggt 4621 gacttacttc ccccaggcaa gacaaataaa tagcagagga caaggctcca aatggagtat 4681 gtccagagcc tgaaggcagt ctcttggggt caggggaggg ggctgaaggg gttactgggc 4741 tgaggccttg gcgaggcttc ttatctgccc cggggaggag gagagggagt cctctgcctg 4801 aggggtaggc ctggctaagc agccctaggc tcaaggagcc ctttgtgcag acttccttgc 4861 aaatcaccta cagctgcagc cctggccact cacacacacc gcagctccag attccagcag 4921 gaccctcggc cagcaggaag aggcctccag tggtaggacc ctccaaccct ctcctctttc 4981 cctagaccat gtggctacac cctacccctg cgaggcccga aggcagcctg aagagagaga 5041 cccctccatc cagccctcca cacctgccca gccccagccc tcacaagaaa gggggctgag 5101 gcaggcctgc aacaggggtc tggtcctgcc ccacacactg gctgttcaag aacccaccca 5161 gcatccacac tccccactgc attcatccca gacccagcag gggactgagt gctggtgtgc 5221 ccccaactcc aatgagcacc ctgtaaggtc aggcactccg gcaccccctt agcagcagtg 5281 acagccaagc aagggagggc agcccttatc cctgaactaa caaggcccgg gagaaagagg 5341 cccaggaggc tgatggtgct tttcagattt taccctcacg gagggtaaaa gataaattgc 5401 acttttcttt tttttttaac tctgtaccga gagaatgttc actgagtggc ttactgtgtg 5461 taccaatgcg ggctggggca ttttcgagaa attacacatt ccttttacac tctggaagct 5521 tagctttacc tgcctgcgtg gttagctggc accccttccg gccccccact ctgtcctgtg 5581 tctggccgcc tcctcaccca cggccgccct tggcagagga gaggccacga gcccagtgag 5641 gaggcggcgc ctgccccgcc accctgggaa cagaggaggc agagccccgc cgcgtgcccc 5701 gaggcctggg gcaggtcgca gcttgctaag ccccagcaaa ccctctgagt tcagtgctaa 5761 ttccagtttt tcttgtttga gggggctgat ccctggcttc cccctttccc cccagaacag 5821 gtcctaggac gggagggggg tggggcgacc ctcctgccct cactccttcc cctcctctct 5881 gctgtgccag cccgctaggg gcttcctctt ttaaagctga tggctcccgg aagggatccc 5941 tcctaccccg agtcctcctc ctggtcctga gttccagggt gggctttgtt agggacaaga 6001 aggatccaat cacatccagc cccaggaaag ggatgaggag ggcgaggccc ccgggggggg 6061 ccaaagtaga ggggaggaag gtcttttggg cggcatgggg tgaacctgcc cagcatgtac 6121 cccgtgtcca gctgtagggg cttcccggga acagagtcac ccttggccac ccaccgcttc 6181 ctgcagggtt cctcacagtt cccctcctga ctacagcctt caggaagaac cattccaaga 6241 gcccagcact gaacacacct caagtattta tcagatgcct actgtatgcc agg //