Site CDNA-Pos Description Allele1 AD-freq ED-freq Total-freq Allele2 AD-freq ED-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 000644 00000 ------------ T 0.93 1.00 0.97 C 0.07 0.00 0.03 0000 --- --- --- --- 000887 00000 ------------ C 0.60 0.93 0.78 T 0.40 0.07 0.22 0000 --- --- --- --- 000914 00000 ------------ G 0.93 1.00 0.96 C 0.07 0.00 0.04 0000 --- --- --- --- 000922 00000 ------------ C 0.97 1.00 0.99 G 0.03 0.00 0.01 0000 --- --- --- --- 000943 00000 ------------ C 0.95 1.00 0.98 G 0.05 0.00 0.02 0000 --- --- --- --- 000950 00000 ------------ C 0.95 1.00 0.98 A 0.05 0.00 0.02 0000 --- --- --- --- 003428 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 003524 00000 ------------ C 0.74 0.70 0.72 T 0.26 0.30 0.28 0000 --- --- --- --- 003596 00000 ------------ A 0.90 1.00 0.95 C 0.10 0.00 0.05 0000 --- --- --- --- 004125 00000 ------------ C 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 004265 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 004679 00000 ------------ T 0.65 0.93 0.80 C 0.35 0.07 0.20 0000 --- --- --- --- 005027 00000 ------------ G 0.71 0.69 0.70 A 0.29 0.31 0.30 0000 --- --- --- --- 005625 00000 ------------ C 0.85 0.74 0.79 T 0.15 0.26 0.21 0000 --- --- --- --- 005723 00000 ------------ G 0.88 1.00 0.94 T 0.12 0.00 0.06 0000 --- --- --- --- 005775 00000 ------------ G 0.95 0.39 0.66 A 0.05 0.61 0.34 0000 --- --- --- --- 005812 00000 ------------ A 0.86 1.00 0.93 C 0.14 0.00 0.07 0000 --- --- --- --- 005829 00000 ------------ A 0.70 0.67 0.69 G 0.30 0.33 0.31 0000 --- --- --- --- 006048 00000 ------------ T 0.83 1.00 0.91 C 0.17 0.00 0.09 0000 --- --- --- --- 006295 00000 ------------ G 0.61 1.00 0.80 A 0.39 0.00 0.20 0000 --- --- --- --- 006409 00000 ------------ T 0.94 0.39 0.67 C 0.06 0.61 0.33 0000 --- --- --- --- 006607 00000 ------------ C 0.95 0.39 0.57 T 0.05 0.61 0.43 0000 --- --- --- --- 007543 00000 ------------ C 0.87 1.00 0.93 A 0.13 0.00 0.07 0000 --- --- --- --- 009355 00000 ------------ G 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 009372 00000 ------------ C 0.75 0.67 0.71 T 0.25 0.33 0.29 0000 --- --- --- --- 009678 00000 ------------ T 0.35 0.93 0.64 C 0.65 0.07 0.36 0000 --- --- --- --- 009836 00000 ------------ C 0.92 1.00 0.96 T 0.08 0.00 0.04 0000 --- --- --- --- 010633 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 010993 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 011674 00000 ------------ G 0.83 1.00 0.91 A 0.17 0.00 0.09 0000 --- --- --- --- 011687 00000 ------------ - 0.73 0.67 0.70 + 0.27 0.33 0.30 0000 --- --- --- --- 012000 00000 ------------ C 0.76 1.00 0.88 G 0.24 0.00 0.12 0000 --- --- --- --- 012111 00000 ------------ C 0.93 1.00 0.97 T 0.07 0.00 0.03 0000 --- --- --- --- 012204 00000 ------------ G 0.73 0.69 0.71 A 0.27 0.31 0.29 0000 --- --- --- --- 012458 00000 ------------ C 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 012753 00000 ------------ C 0.65 0.72 0.68 T 0.35 0.28 0.32 0000 --- --- --- --- 012759 00000 ------------ A 0.92 1.00 0.96 T 0.08 0.00 0.04 0000 --- --- --- --- 013121 00000 ------------ C 0.95 1.00 0.98 T 0.05 0.00 0.02 0000 --- --- --- --- 013183 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 014229 00000 ------------ C 0.71 0.68 0.70 G 0.29 0.32 0.30 0000 --- --- --- --- 014682 00000 ------------ T 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 014868 00000 ------------ A 0.91 1.00 0.96 G 0.09 0.00 0.04 0000 --- --- --- --- 015184 00000 ------------ C 0.90 0.41 0.66 T 0.10 0.59 0.34 0000 --- --- --- --- 015223 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 015536 00000 ------------ A 0.96 1.00 0.98 G 0.04 0.00 0.02 0000 --- --- --- --- 015568 00000 ------------ C 0.82 1.00 0.91 A 0.18 0.00 0.09 0000 --- --- --- --- 015667 00000 ------------ T 0.80 0.93 0.87 A 0.20 0.07 0.13 0000 --- --- --- --- 017328 00000 ------------ C 0.93 1.00 0.96 T 0.07 0.00 0.04 0000 --- --- --- --- 017338 00000 ------------ C 0.93 1.00 0.96 T 0.07 0.00 0.04 0000 --- --- --- --- 017395 00000 ------------ A 0.76 0.93 0.85 G 0.24 0.07 0.15 0000 --- --- --- --- 018055 00000 ------------ T 0.80 0.92 0.85 C 0.20 0.08 0.15 0000 --- --- --- --- 018281 00000 ------------ G 0.69 0.56 0.63 C 0.31 0.44 0.37 0000 --- --- --- --- 018531 00000 ------------ G 0.95 1.00 0.98 T 0.05 0.00 0.02 0000 --- --- --- --- 018994 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 019171 00000 ------------ A 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 019375 00000 ------------ G 0.81 0.43 0.62 A 0.19 0.57 0.38 0000 --- --- --- --- 019405 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 019616 00000 ------------ T 0.83 1.00 0.91 C 0.17 0.00 0.09 0000 --- --- --- --- 019700 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 019705 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 019804 00000 ------------ A 1.00 0.94 0.97 G 0.00 0.06 0.03 0000 --- --- --- --- 020356 00000 ------------ C 0.81 0.43 0.61 T 0.19 0.57 0.39 0000 --- --- --- --- 020480 00000 ------------ T 0.98 0.96 0.97 C 0.02 0.04 0.03 0000 --- --- --- --- 020687 00000 ------------ C 0.66 0.57 0.61 T 0.34 0.43 0.39 0000 --- --- --- --- 020699 00000 ------------ C 0.95 1.00 0.98 T 0.05 0.00 0.02 0000 --- --- --- --- 021245 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 021615 00000 ------------ G 0.90 1.00 0.95 A 0.10 0.00 0.05 0000 --- --- --- --- 021983 00000 ------------ T 0.97 1.00 0.99 C 0.03 0.00 0.01 0000 --- --- --- --- 022162 00000 ------------ T 0.82 1.00 0.92 C 0.18 0.00 0.08 0000 --- --- --- --- 022967 00000 ------------ G 0.92 1.00 0.96 A 0.08 0.00 0.04 0000 --- --- --- --- 022979 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 023854 00000 ------------ C 1.00 0.93 0.96 T 0.00 0.07 0.04 0000 --- --- --- --- 023856 00000 ------------ A 1.00 0.93 0.96 T 0.00 0.07 0.04 0000 --- --- --- --- 023888 00000 ------------ T 0.91 1.00 0.96 C 0.09 0.00 0.04 0000 --- --- --- --- 023948 00000 ------------ C 0.94 1.00 0.97 G 0.06 0.00 0.03 0000 --- --- --- --- 024058 00000 ------------ G 0.97 1.00 0.99 A 0.03 0.00 0.01 0000 --- --- --- --- 024121 00000 ------------ - 0.18 0.00 0.09 + 0.82 1.00 0.91 0000 --- --- --- --- 024311 00000 ------------ T 0.95 1.00 0.98 C 0.05 0.00 0.02 0000 --- --- --- --- 024550 00000 ------------ A 0.97 1.00 0.99 G 0.03 0.00 0.01 0000 --- --- --- --- 024565 00000 ------------ C 0.80 1.00 0.90 G 0.20 0.00 0.10 0000 --- --- --- --- 024677 00000 ------------ G 0.64 0.54 0.59 C 0.36 0.46 0.41 0000 --- --- --- --- 025097 00000 ------------ C 0.97 1.00 0.99 G 0.03 0.00 0.01 0000 --- --- --- --- 025131 00000 ------------ - 0.11 0.00 0.06 + 0.89 1.00 0.94 0000 --- --- --- --- 025205 00000 ------------ G 0.93 0.52 0.72 A 0.07 0.48 0.28 0000 --- --- --- --- 025221 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 025254 00000 ------------ G 0.88 1.00 0.95 A 0.12 0.00 0.05 0000 --- --- --- --- 025277 00000 ------------ G 0.57 0.48 0.51 A 0.43 0.52 0.49 0000 --- --- --- --- 025293 00000 ------------ G 0.97 1.00 0.99 A 0.03 0.00 0.01 0000 --- --- --- --- 025403 00000 ------------ C 0.97 1.00 0.99 G 0.03 0.00 0.01 0000 --- --- --- --- 025572 00000 ------------ C 0.78 1.00 0.90 T 0.22 0.00 0.10 0000 --- --- --- --- 026079 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 026238 00000 ------------ C 0.81 1.00 0.90 T 0.19 0.00 0.10 0000 --- --- --- --- 026741 00000 ------------ C 1.00 0.96 0.98 T 0.00 0.04 0.02 0000 --- --- --- --- 027252 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 028166 00000 ------------ G 0.92 1.00 0.96 A 0.08 0.00 0.04 0000 --- --- --- --- 028266 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 028274 00000 ------------ A 0.92 1.00 0.96 G 0.08 0.00 0.04 0000 --- --- --- --- 028351 00000 ------------ A 0.81 1.00 0.90 G 0.19 0.00 0.10 0000 --- --- --- --- 028919 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 028920 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 029408 00000 ------------ C 1.00 0.93 0.96 T 0.00 0.07 0.04 0000 --- --- --- --- 029547 00000 ------------ G 0.86 1.00 0.93 C 0.14 0.00 0.07 0000 --- --- --- --- 029621 00000 ------------ G 0.65 0.54 0.60 T 0.35 0.46 0.40 0000 --- --- --- --- 029654 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 029761 00000 ------------ A 0.84 1.00 0.93 G 0.16 0.00 0.07 0000 --- --- --- --- 029797 00000 ------------ - 0.03 0.00 0.01 + 0.97 1.00 0.99 0000 --- --- --- --- 029798 00000 ------------ A 0.83 1.00 0.93 C 0.17 0.00 0.07 0000 --- --- --- --- 030242 00000 ------------ C 0.94 1.00 0.97 T 0.06 0.00 0.03 0000 --- --- --- --- 030291 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 030341 00000 ------------ G 0.79 0.47 0.65 A 0.21 0.53 0.35 0000 --- --- --- --- 030359 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 031004 00000 ------------ T 0.81 0.48 0.65 C 0.19 0.52 0.35 0000 --- --- --- --- 031033 00000 ------------ C 0.81 1.00 0.90 G 0.19 0.00 0.10 0000 --- --- --- --- 031250 00000 ------------ - 0.91 1.00 0.96 + 0.09 0.00 0.04 0000 --- --- --- --- 031260 00000 ------------ G 0.82 1.00 0.92 C 0.18 0.00 0.08 0000 --- --- --- --- 031499 00000 ------------ G 0.81 1.00 0.90 A 0.19 0.00 0.10 0000 --- --- --- --- 032226 00000 ------------ C 0.83 0.48 0.67 T 0.17 0.52 0.33 0000 --- --- --- --- 032233 00000 ------------ G 0.96 0.74 0.86 A 0.04 0.26 0.14 0000 --- --- --- --- 032463 00000 ------------ T 1.00 0.95 0.98 G 0.00 0.05 0.02 0000 --- --- --- --- 032758 00000 ------------ T 0.65 0.57 0.61 C 0.35 0.43 0.39 0000 --- --- --- --- 033437 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 033568 00000 ------------ C 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 033682 00000 ------------ - 0.07 0.00 0.03 + 0.93 1.00 0.97 0000 --- --- --- --- 033869 00000 ------------ A 0.74 0.45 0.59 G 0.26 0.55 0.41 0000 --- --- --- --- 034138 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 034438 00000 ------------ T 0.95 1.00 0.98 C 0.05 0.00 0.02 0000 --- --- --- --- 034611 00000 ------------ G 0.93 1.00 0.97 A 0.07 0.00 0.03 0000 --- --- --- --- 034647 00000 ------------ A 0.96 1.00 0.98 G 0.04 0.00 0.02 0000 --- --- --- --- 035291 00000 ------------ G 0.67 0.57 0.62 T 0.33 0.43 0.38 0000 --- --- --- --- 035426 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 035493 00000 ------------ C 0.75 0.95 0.84 T 0.25 0.05 0.16 0000 --- --- --- --- 035911 00000 ------------ C 1.00 0.97 0.99 T 0.00 0.03 0.01 0000 --- --- --- --- 036544 00000 ------------ G 0.91 0.50 0.72 A 0.09 0.50 0.28 0000 --- --- --- --- 036549 00000 ------------ G 0.90 1.00 0.95 A 0.10 0.00 0.05 0000 --- --- --- --- 036756 00000 ------------ C 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 036871 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 037194 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 037195 00000 ------------ C 0.94 1.00 0.97 A 0.06 0.00 0.03 0000 --- --- --- --- 037450 00000 ------------ A 0.87 0.46 0.66 G 0.13 0.54 0.34 0000 --- --- --- --- 037513 00000 ------------ A 0.93 1.00 0.97 G 0.07 0.00 0.03 0000 --- --- --- --- 037569 00000 ------------ C 0.54 0.54 0.54 T 0.46 0.46 0.46 0000 --- --- --- --- 037617 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 037644 00000 ------------ G 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 038126 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 038154 00000 ------------ C 0.60 0.55 0.58 A 0.40 0.45 0.42 0000 --- --- --- --- 038219 00000 ------------ C 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 038343 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 038367 00000 ------------ - 0.05 0.00 0.02 + 0.95 1.00 0.98 0000 --- --- --- --- 038442 00000 ------------ C 0.95 1.00 0.98 T 0.05 0.00 0.02 0000 --- --- --- --- 038757 00000 ------------ C 0.71 0.48 0.60 T 0.29 0.52 0.40 0000 --- --- --- --- 038848 00000 ------------ C 0.86 0.46 0.66 T 0.14 0.54 0.34 0000 --- --- --- --- 038850 00000 ------------ T 0.89 1.00 0.94 C 0.11 0.00 0.06 0000 --- --- --- --- 039236 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 039257 00000 ------------ G 0.79 1.00 0.89 C 0.21 0.00 0.11 0000 --- --- --- --- 040239 00000 ------------ - 0.35 0.52 0.43 + 0.65 0.48 0.57 0000 --- --- --- --- 040265 00000 ------------ G 0.93 1.00 0.97 A 0.07 0.00 0.03 0000 --- --- --- --- 040309* 040512 00000 ------------ T 0.96 1.00 0.98 G 0.04 0.00 0.02 0000 --- --- --- --- 040517 00000 ------------ G 0.67 0.48 0.58 A 0.33 0.52 0.42 0000 --- --- --- --- 040721 00000 ------------ G 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 040932 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 040971 00000 ------------ C 0.88 0.48 0.68 T 0.12 0.52 0.32 0000 --- --- --- --- 041230 00000 ------------ G 0.92 1.00 0.96 A 0.08 0.00 0.04 0000 --- --- --- --- NOTE: AD-freq: African Descent frequency ED-freq: European Descent frequency NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 011687: TCT 024121: GA 025131: G 029797: C 031250: CTC 033682: A 038367: C 040239: G The following site(s) was observed to have three alleles. The frequency for each allele is given below: Site Allele1 AD-freq ED-freq Total-freq Allele2 AD-freq ED-freq Total-freq Allele3 AD-freq ED-freq Total-freq 040309 C 0.76 1.00 0.88 G 0.02 0.00 0.01 T 0.22 0.00 0.11