************************************************************* **** **** **** Output from PHASE v2.0 **** **** Code by M Stephens, with contributions from N Li **** **** **** ************************************************************* BEGIN COMMAND_LINE /usr/local/genome/lib/phase/PHASE2 -d1 cd151.phase.inp cd151.phase.out END COMMAND_LINE BEGIN OUTFILE_LIST cd151.phase.out_freqs : haplotype frequency estimates cd151.phase.out_pairs : most likely haplotype pairs for each individual cd151.phase.out_recom : estimates of recombination parameters cd151.phase.out_monitor : file for monitoring convergence END OUTFILE_LIST BEGIN INPUT_SUMMARY Number of Individuals: 47 Number of Loci: 57 Positions of loci: 331 463 1086 1591 1781 2034 2149 2221 2673 3360 3995 6234 6296 6332 6353 6958 7173 7270 7323 7428 7559 7574 8528 8641 8678 9139 9214 9329 9667 9976 9981 10099 10191 10229 10279 10317 10399 10635 10650 10684 10712 10743 11186 11810 11878 11922 12036 12138 12163 12198 12843 13322 14102 14187 14190 14242 14335 END INPUT_SUMMARY List of haplotypes found in best reconstruction, with counts. (See file cd151.phase.out_freqs for haplotype population frequency estimates) BEGIN LIST_SUMMARY 1 GAGGGTDTTGTDGGGCGACTCTCGCADCTGTTGCTAGACAACGGTTGDGAGCGCTGG 5.000000 2 GAGGGTDTTGTDGGGCGACCCTCGCAICTGTTGCTAGACAACGGTTGDGAGCGCTGG 1.000000 3 GAGGGTDTTGTDGGGCGATTCTCGCAICTGTTGTTACACAACGGTCGDGAGCGCTGG 3.000000 4 GAGGGTDTTGTDGGGTGACTCTCGCAICTGTTGCTAGACAACGGTTGDGAGCGCTGG 7.000000 5 GAGGGTDTTGTDGGGTGACTCTCGCAICTGTTGCCAGACAACGGTTGDGAGCGCTGG 1.000000 6 GAGGGTDTTGTDGGGTGACTCTCGCADCTGTTGCTACACAACGGTCGDGAGCGCTGG 1.000000 7 GAGGGTDTTGTDGGGTGACTCTCGCADCTGTTGCTAGACAACGGTTGDGAGCGCTGG 25.000000 8 GAGGGTDTTGTDGGGTGACTCTCGCADCTGTTGCTAGACAACGGTTGDGAGCGTTGG 1.000000 9 GAGGGTDTTGTDGGGTGACTCTCGCADCTACTGCTAGACAACGGTTGDGAGCGCTGG 1.000000 10 GAGGGTDTTGTDGGATGGCTCTCGCADCTGTTGCTAGACAACGGTTGDGAGCGCTGG 1.000000 11 GAGGGTDTTGTDTCGTGACTCTCGCADCTGTTGCTAGACAACGGTTGDGAGCGCTGG 1.000000 12 GAGGGTDTTGTIGGGTGACTCTCGCAICTGTTGCTACACAACGGTCGDGAGCGCTGG 1.000000 13 GAGGGTDTTGTIGGGTGACTCTCGCAICTGTTGCTAGACAACGGTTGDCAGCGCTGG 1.000000 14 GAGGTTDTTGTDTGGCGATTCTCGCAICTGTTGTTACACAACGGTCGDGAGCGCTGG 5.000000 15 GAGGTTDTTGTDTGGCGATTCTCGCADCTGTTGTTACACAACGGTCGDGAGCGCTGG 2.000000 16 GAGGTTDTTGTDTGGCGATTCTCGCADCTGTTGTTACACAACGGTCGDGAGCGTTGG 1.000000 17 GAAGGTDTTGTDGGGTGACTCTCGCAICTGTTGCTAGACAACGGTTGDGAGCGCTGG 1.000000 18 GAAGGTDTTGTDGGGTGACTCTCGCADCTGTTGCTAGACAACGGTTGDGAGCGCTGG 1.000000 19 GAAGGCDGCTTIGGACGGCCCTGAGGICCACCCCCTCGGGGGAGCCAICTGGCTCAA 1.000000 20 GAAGGCIGCGTIGGACAGCCCTGAGGICCACCCCCTCGGGGGAGCCAICTGGCTCAA 1.000000 21 GAAGGCIGCGCDTCGCAGCCTTGAGGICCACCCCCTCGGGGGAGCCAICTGGCTCAA 1.000000 22 GAAGGCIGCGCIGGACAATCTCGGGGICCACCCCTTCGGGGGACCCAICTGGCTCAG 1.000000 23 GAAAGCIGCGTIGGGCAGCCTTCGCGICCACCCCCTCGGGGGAGCCAICTGGCCCAG 1.000000 24 GAAAGCIGCGTIGGACAATCCCGGGGICCACCCCTTCGGGGGACCCAICTGGCTCAA 1.000000 25 GAAAGCIGCGTIGGACAATCTCGGGGICCACCCCTTCGGGGGACCCAICTGGCTCAA 3.000000 26 GGGGGTDTTGTDGGGCGATTCTCGCAICTGTTGTTACACAACGGTCGDGAGCGCTGG 1.000000 27 GGGGGTDTTGTDGGGTGACTCTCGCADCTGTTGCTAGACAACGGTTGDGAGCGCTGG 2.000000 28 GGGGGTDTTGTDGCGCAGCCTTGAGGICCACCCCCTCGGGGGAGCCAICTGGCTCAA 1.000000 29 GGGGGTDTTGTDTGGCGATTCTCGCAICTGTTGTTACACAACGGTCGDGAGCGCTGG 1.000000 30 GGGAGTDTCGCDTGGCAATCTTCGCGICCGTTGCTTGGGAGGAGCCGDGAGGCCCAG 1.000000 31 GGGAGTDTCGCIGGACAGCCTTCAGGICCACCCCCTCGGGGGAGCCAICTGGCTCAA 1.000000 32 GGGAGCDGCGCIGGACAGCCTTGAGGICCACCCCCTCGGGGGAGCCAICTGGCTCAA 1.000000 33 GGAGGCDGCTTIGGACAGCCTTGAGGITCACCCCCTCGGGGGAGCCAICTCGCTCAG 1.000000 34 GGAGGCDGCTTIGGACAGCCTTGAGGITCACCCCCTCGGGGGAGCCAICTCGCTCAA 1.000000 35 GGAGGCIGCGTDGGACAGCCTTGAGGICCACCCCCTCGGGGGAGCCAICTGGCTCAA 2.000000 36 GGAGGCIGCGTDTGGCGGCCTTGAGGICCACCCCCTCGGGGGAGCCAICTGGCTCAA 1.000000 37 GGAGGCIGCGTDTCGCAGCCTTGAGGICCGTCCCTTCGGGGGAGCCAICTGGCTCAA 1.000000 38 GGAGGCIGCGTIGGACAGCCTTGAGGICCACCCCCTCGGGGGAGCCAICTGGCTCAA 1.000000 39 GGAAGCDGCGCDTCGCAATCTTCGCGICCGTTCCTTCGGAGGAGCCGDGAGGCCCAG 1.000000 40 AGAGGCDGCTTIGGACGGCCTTCAGGITCACCGCCTCGGGGGAGCCAICTCGCTCAA 1.000000 41 AGAGGCDGCTTIGGACAGCCTTGAGGICCACCGCTTCGGGGGAGCCAICTGGCTCAA 1.000000 42 AGAGGCDGCTTIGGACAGCCTTGAGGITCACCGCCTCGGGGGAGCCAICTCGCTCAG 1.000000 43 AGAGGCDGCTTIGGACAGCCTTGAGGITCACCCCCTCGGGGGAGCCAICTCGCTCAG 2.000000 44 AGAGGCDGCTTIGGACAGCCTTGAGGITCACCCCCTCGGGGGAGCCAICTCGCTCAA 5.000000 END LIST_SUMMARY Summary of best reconstruction (numbers refer to the list of haplotypes given above) BEGIN BESTPAIRS_SUMMARY DY01: (4,14) DY02: (4,14) DY03: (11,44) DY04: (10,22) DY05: (27,30) DY06: (14,29) DY07: (4,14) DY08: (28,38) DY09: (15,31) DY10: (7,44) DY11: (7,7) DY12: (7,9) DY13: (7,7) DY14: (5,14) DY15: (32,35) DY16: (7,20) DY17: (4,40) DY18: (7,27) DY19: (7,39) DY20: (8,36) DY21: (7,34) DY22: (16,35) DY23: (15,23) DY24: (21,37) E101: (7,33) E102: (25,43) E103: (7,42) E104: (6,44) E105: (2,3) E106: (7,41) E107: (1,7) E108: (7,7) E109: (7,24) E110: (3,13) E111: (7,19) E112: (7,44) E113: (3,26) E114: (1,25) E115: (1,7) E116: (7,7) E117: (43,44) E118: (1,7) E119: (1,7) E120: (7,25) E121: (4,4) E122: (4,12) E123: (17,18) END BESTPAIRS_SUMMARY Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in []: BEGIN BESTPAIRS1 0 DY01 G A G G G T D T T G T D G G G T G A C T C T C G C A I C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G G A G G T T D T T G T D T G G C G A T T C T C G C A I C T G T T G T T A C A C A A C G G T C G D G A G C G C T G G 0 DY02 G A G G G T D T T G T D G G G T G A C T C T C G C A I C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G G A G G T T D T T G T D T G G C G A T T C T C G C A I C T G T T G T T A C A C A A C G G T C G D G A G C G C T G G 0 DY03 G A G G G T D T T G T D (T) (C) G T G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G [A] [G] A G G C D G C T T I (G) (G) A C A G C C T T G A G G I T C A C C C C C T C G G G G G A G C C A I C T C G C T C A A 0 DY04 G A (G) G G T D T T G (T) D G G A T G (G) C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G G A (A) G G C I G C G (C) I G G A C A (A) T C T C G G G G I C C A C C C C T T C G G G G G A C C C A I C T G G C T C A G 0 DY05 G G G (G) G T D T (T) G (T) D G G G T G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G G G G (A) G T D T (C) G (C) D T G G C A A T C T T C G C G I C C G T T G C T T G G G A G G A G C C G D G A G G C C C A G 0 DY06 G (A) G G T T D T T G T D T G G C G A T T C T C G C A I C T G T T G T T A C A C A A C G G T C G D G A G C G C T G G G (G) G G G T D T T G T D T G G C G A T T C T C G C A I C T G T T G T T A C A C A A C G G T C G D G A G C G C T G G 0 DY07 G A G G G T D T T G T D G G G T G A C T C T C G C A I C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G G A G G [T] T D T T G T D T G G C G A T T C T C G C A I C T G T T G T T A C A C A A C G G T C G D G A G C G C T G G 0 DY08 G G G G G T D T T G T (D) G C G C A G C C T T G A G G I C C A C C C C C T C G G G G G A G C C A I C T G G C T C A A G G [A] G G C I G C G T (I) G G A C A G C C T T G A G G I C C A C C C C C T C G G G G G A G C C A I C T G G C T C A A 0 DY09 G A G G T T D T T G T D T G G C G A T T C T C G C A D C T G T T G T T A C A C A A C G G T C G D G A G C G C T G G G G G A G T D T C G C I G G A C A G C C T T C A G G I C C A C C C C C T C G G G G G A G C C A I C T G G C T C A A 0 DY10 G A G G G T D T T G T D G G G T G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G [A] [G] A G G C D G C T T I G G A C A G C C T T G A G G I T C A C C C C C T C G G G G G A G C C A I C T C G C T C A A 0 DY11 G A G G G T D T T G T D G G G T G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G G A G G G T D T T G T D G G G T G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G 0 DY12 G A G G G T D T T G T D G G G T G A C T C T C G C A D C T (G) T T G C T A G A C A A C G G T T G D G A G C G C T G G G A G G G T D T T G T D G G G T G A C T C T C G C A D C T (A) C T G C T A G A C A A C G G T T G D G A G C G C T G G 0 DY13 G A G G G T D T T G T D G G G T G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G G A G G G T D T T G T D G G G T G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G 0 DY14 G A G G G T D T T G T D G G G T G A C T C T C G C A I C T G T T G C (C) A G A C A A C G G T T G D G A G C G C T G G G A G G T T D T T G T D T G G C G A T T C T C G C A I C T G T T G T (T) A C A C A A C G G T C G D G A G C G C T G G 0 DY15 G G (G) A G C D G C G C (I) G G A C A G C C T T G A G G I C C A C C C C C T C G G G G G A G C C A I C T G G C T C A A G G (A) G G C I G C G T (D) G G A C A G C C T T G A G G I C C A C C C C C T C G G G G G A G C C A I C T G G C T C A A 0 DY16 G A (G) G G T D T T G T D G G G T G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G G A (A) G G C I G C G T I G G A C A G C C C T G A G G I C C A C C C C C T C G G G G G A G C C A I C T G G C T C A A 0 DY17 G A G G G T D T T G T D G G G T G A C T C T C G C A I C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G [A] G A G G C D G C T T I G G A C G G C C T T C A G G I T C A C C G C C T C G G G G G A G C C A I C T C G C T C A A 0 DY18 G A G G G T D T T G T D G G G T G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G G G G G G T D T T G T D G G G T G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G 0 DY19 G A (G) G G T D T T G T D G G G T G A C T C T C G C A D C T G T T (G) C T A (G) A C A A C G G T T G D G A G C G C T G G G [G] (A) A G C D G C G C D T C G C A A T C T T C G C G I C C G T T (C) C T T (C) G G A G G A G C C G D G A G G C C C A G 0 DY20 G (A) (G) G G T (D) (T) (T) G T D G G G T G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G T T G G G (G) (A) G G [C] (I) (G) (C) G T D T G G C G G C C T T G A G G I C C [A] [C] C C C C T C G G G G G A G C C A I C T G G C T C A A 0 DY21 G (A) G G G T D T T G T D G G G T G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G G (G) A G G C D G C T T I G G A C A G C C T T G A G G I T C A C C C C C T C G G G G G A G C C A I C T C G C T C A A 0 DY22 G A G G T T D T T G T D T G G C G A T T C T C G C A D C T G T T G T T A C A C A A C G G T C G D G A G C G T T G G G G A G G C I G C G T D G G A C A G C C T T G A G G I C C A C C C C C T C G G G G G A G C C A I C T G G C T C A A 0 DY23 G A G G T T D T T G T D T G G C G A T T C T C G C A D C T G T T G T T A C A C A A C G G T C G D G A G C G C T G G G A A A G C I G C G T I G G G C A G C C T T C G C G I C C A C C C C C T C G G G G G A G C C A I C T G G C C C A G 0 DY24 G (A) A G G C I G C G (C) D T C G C A G C C T T G A G G I C C (A) (C) C C C (C) T C G G G G G A G C C A I C T G G C T C A A G (G) A G G C I G C G (T) D T C G C A G C C T T G A G G I C C (G) (T) C C C (T) T C G G G G G A G C C A I C T G G C T C A A 0 E101 G (A) G G G T D T T G T D G G G T G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G G (G) A G G C D G C T T I G G A C A G C C T T G A G G I T C A C C C C C T C G G G G G A G C C A I C T C G C T C A G 0 E102 G A A A G C I G C G T I G G A C A A T C T C G G G G I C C A C C C C T T C G G G G G A C C C A I C T G G C T C A A [A] G A G G C D G C T T I G G A C A G C C T T G A G G I T C A C C C C C T C G G G G G A G C C A I C T C G C T C A G 0 E103 G A G G G T D T T G T D G G G T G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G [A] [G] A G G C D G C T T I G G A C A G C C T T G A G G I T C A C C G C C T C G G G G G A G C C A I C T C G C T C A G 0 E104 G A G G G T D T T G T D G G G T G A C T C T C G C A D C T G T T G C T A C A C A A C G G T C G D G A G C G C T G G A G A G G C D G C T T I G G A C A G C C T T G A G G I T C A C C C C C T C G G G G G A G C C A I C T C G C T C A A 0 E105 G A G G G T D T T G T D G G G C G A C (C) C T C G C A I C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G G A G G G T D T T G T D G G G C G A T (T) C T C G C A I C T G T T G T T A C A C A A C G G T C G D G A G C G C T G G 0 E106 G A G G G T D T T G T D G G G T G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G A G A G G C D G C T T I G G A C A G C C T T G A G G I C C A C C G C T T C G G G G G A G C C A I C T G G C T C A A 0 E107 G A G G G T D T T G T D G G G C G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G G A G G G T D T T G T D G G G T G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G 0 E108 G A G G G T D T T G T D G G G T G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G G A G G G T D T T G T D G G G T G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G 0 E109 G A G G G T D T T G T D G G G T G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G G A A A G C I G C G T I G G A C A A T C C C G G G G I C C A C C C C T T C G G G G G A C C C A I C T G G C T C A A 0 E110 G A G G G T D T T G T (D) G G G C G A T T C T C G C A I C T G T T G T T A C A C A A C G G T C G D (G) A G C G C T G G G A G G G T D T T G T (I) G G G T G A C T C T C G C A I C T G T T G C T A G A C A A C G G T T G D (C) A G C G C T G G 0 E111 G A G G G T D T T G T D G G G T G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G G A A G G C D G C T T I G G A C G G C C C T G A G G I C C A C C C C C T C G G G G G A G C C A I C T G G C T C A A 0 E112 G A G G G T D T T G T D G G G T G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G A G A G G C D G C T T I G G A C A G C C T T G A G G I T C A C C C C C T C G G G G G A G C C A I C T C G C T C A A 0 E113 G A G G G T D T T G T D G G G C G A T T C T C G C A I C T G T T G T T A C A C A A C G G T C G D G A G C G C T G G G G G G G T D T T G T D G G G C G A T T C T C G C A I C T G T T G T T A C A C A A C G G T C G D G A G C G C T G G 0 E114 G A G G G T D T T G T D G G G C G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G G A A A G C I G C G T I G G A C A A T C T C G G G G I C C A C C C C T T C G G G G G A C C C A I C T G G C T C A A 0 E115 G A G G G T D T T G T D G G G C G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G G A G G G T D T T G T D G G G T G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G 0 E116 G A G G G T D T T G T D G G G T G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G G A G G G T D T T G T D G G G T G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G 0 E117 A G A G G C D G C T T I G G A C A G C C T T G A G G I T C A C C C C C T C G G G G G A G C C A I C T C G C T C A G A G A G G C D G C T T I G G A C A G C C T T G A G G I T C A C C C C C T C G G G G G A G C C A I C T C G C T C A A 0 E118 G A G G G T D T T G T D G G G C G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G G A G G G T D T T G T D G G G T G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G 0 E119 G A G G G T D T T G T D G G G C G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G G A G G G T D T T G T D G G G T G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G 0 E120 G A G G G T D T T G T D G G G T G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G G A A A G C I G C G T I G G A C A A T C T C G G G G I C C A C C C C T T C G G G G G A C C C A I C T G G C T C A A 0 E121 G A G G G T D T T G T D G G G T G A C T C T C G C A I C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G G A G G G T D T T G T D G G G T G A C T C T C G C A I C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G 0 E122 G A G G G T D T T G T (D) G G G T G A C T C T C G C A I C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G G A G G G T D T T G T (I) G G G T G A C T C T C G C A I C T G T T G C T A C A C A A C G G T C G D G A G C G C T G G 0 E123 G A A G G T D T T G T D G G G T G A C T C T C G C A I C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G G A A G G T D T T G T D G G G T G A C T C T C G C A D C T G T T G C T A G A C A A C G G T T G D G A G C G C T G G END BESTPAIRS1 Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in [] with phase known positions indicated by = BEGIN BESTPAIRS2 0 DY01 ? = = = G = = = = = = = G = = T = = C = = = = = = = = = = = = = = C = = G = = = = = = = = T = = = = = = = = = = = ? = = = T = = = = = = = T = = C = = T = = = = = = = = = = = = = = T = = C = = = = = = = = C = = = = = = = = = = = 0 DY02 ? ? = = G = = = = = = = G = = T = = C = = = = = = = = = = = = = = C = = G = = = = = = = = T = = = = = = = = = = = ? ? = = T = = = = = = = T = = C = = T = = = = = = = = = = = = = = T = = C = = = = = = = = C = = = = = = = = = = = 0 DY03 ? ? ? ? = T = T T G = D (T) (C) G T G A = T C = C G C A D C T G T T G = T A G A C A A C G = T T G D G A G C G C T G G ? ? ? ? = C = G C T = I (G) (G) A C A G = C T = G A G G I T C A C C C = C T C G G G G G A = C C A I C T C G C T C A A 0 DY04 ? ? (G) = = T D T T = (T) D = = = T G (G) C T C T C = C A D = T G T T G = = A G A C A A C G G T T G D G A = C G C T G = ? ? (A) = = C I G C = (C) I = = = C A (A) T C T C G = G G I = C A C C C = = T C G G G G G A C C C A I C T = G C T C A = 0 DY05 = = = (G) = = = = (T) = (T) = G = = T G = C T C = = = = A D = T = = = = = = A = A C = A C G = T T = = = = = ? G = T G = = = = (A) = = = = (C) = (C) = T = = C A = T C T = = = = G I = C = = = = = = T = G G = G G A = C C = = = = = ? C = C A = 0 DY06 = (A) = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (G) = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 DY07 ? ? = ? ? = = = = = = = G = = T = = C = = = = = = = = = = = = = = C = = G = = = = = = = = T = ? = = = = = = = = = ? ? = ? ? = = = = = = = T = = C = = T = = = = = = = = = = = = = = T = = C = = = = = = = = C = ? = = = = = = = = = 0 DY08 = = ? ? = T D T T = = (D) = C G = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = ? ? ? ? = ? = = = = = = = ? ? = C I G C = = (I) = G A = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = ? ? ? ? = ? = = = = = 0 DY09 ? A = G T = = = T = T D T = G = G A T T C = = G C A D = T G T T G T T A = A C A A C G = T = G D G A = C G C T G G ? G = A G = = = C = C I G = A = A G C C T = = A G G I = C A C C C C C T = G G G G G A = C = A I C T = G C T C A A 0 DY10 ? ? G = = T = T T G = D = = G T G A = T C = C G C A D C T G T T G = T A G A C A A C G = T T G D G A G ? G C T G G ? ? A = = C = G C T = I = = A C A G = C T = G A G G I T C A C C C = C T C G G G G G A = C C A I C T C ? C T C A A 0 DY11 ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 DY12 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (G) T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (A) C = = = = = = = = = = = = = = = = = = = = = = = = = = 0 DY13 ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = 0 DY14 ? ? = = G = = = = = = = G = = T = = C = = = = = = = = = = = = = = C (C) = G = = = = = = = = T = = = = = = = = = = = ? ? = = T = = = = = = = T = = C = = T = = = = = = = = = = = = = = T (T) = C = = = = = = = = C = = = = = = = = = = = 0 DY15 = = (G) A = = D = = = C (I) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (A) G = = I = = = T (D) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 DY16 = = (G) = = T D T T = = D = = G T G A = T = = C G C A D = T G T T G = T A G A C A A C G = T T G D G A = ? G C T G G = = (A) = = C I G C = = I = = A C A G = C = = G A G G I = C A C C C = C T C G G G G G A = C C A I C T = ? C T C A A 0 DY17 ? A G = = ? = T T G = D = = G T = A = T C = = G C A = C T G T T = = T A G A C A A C G = T T G D G A G C G C T G G ? G A = = ? = G C T = I = = A C = G = C T = = A G G = T C A C C = = C T C G G G G G A = C C A I C T C G C T C A A 0 DY18 ? A = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = ? G = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = 0 DY19 ? ? (G) G = T = T T = T = G G = T G = C T C = = = = A D = T = = = (G) = = A (G) A C = A C G = T T = = = = = C G = T G = ? ? (A) A = C = G C = C = T C = C A = T C T = = = = G I = C = = = (C) = = T (C) G G = G G A = C C = = = = = G C = C A = 0 DY20 = (A) (G) = = ? (D) (T) (T) = = = G = = T = A = T C = C G C A D = T ? ? T G = T A G A C A A C G = T T G D G A = ? G = T G G = (G) (A) = = ? (I) (G) (C) = = = T = = C = G = C T = G A G G I = C ? ? C C = C T C G G G G G A = C C A I C T = ? C = C A A 0 DY21 = (A) G = = T = T T G = D = = G T G A = T C = C G C A D C T G T T G = T A G A C A A C G = T T G D G A G ? G C T G G = (G) A = = C = G C T = I = = A C A G = C T = G A G G I T C A C C C = C T C G G G G G A = C C A I C T C ? C T C A A 0 DY22 = A G = T T D T T = = = T = G = G A T T C = C G C A D = T G T T G T T A = A C A A C G = T = G D G A = C G = ? G G = G A = G C I G C = = = G = A = A G C C T = G A G G I = C A C C C C C T = G G G G G A = C = A I C T = G C = ? A A 0 DY23 = = G G T T D T T = = D T = = = G A T T C = = = = A D = T G T T G T T A = A C A A C G = T = G D G A = ? G = T G = = = A A G C I G C = = I G = = = A G C C T = = = = G I = C A C C C C C T = G G G G G A = C = A I C T = ? C = C A = 0 DY24 = (A) = = = = = = = = (C) = = = = = = = = = = = = = = = = = = (A) (C) = = = (C) = = = = = = = = = = = = ? = = = ? = = = = = = (G) = = = = = = = = (T) = = = = = = = = = = = = = = = = = = (G) (T) = = = (T) = = = = = = = = = = = = ? = = = ? = = = = = 0 E101 = (A) G = = T = T T G = D = = G T G A = T C = C G C A D C T G T T G = T A G A C A A C ? = T T ? ? G A G ? G C T G = = (G) A = = C = G C T = I = = A C A G = C T = G A G G I T C A C C C = C T C G G G G G ? = C C ? ? C T C ? C T C A = 0 E102 ? A = A = = I = = G = = = = = = = A T = = C = G = = = C = = = = = = T = = = = = = = = C = = = = = = G = = = = = A ? G = G = = D = = T = = = = = = = G C = = T = A = = = T = = = = = = C = = = = = = = = G = = = = = = C = = = = = G 0 E103 ? ? ? ? ? T = T T G = D = = G T G A = T C = C G C A D C T G T T = = T A G A C A A C G = T T G D G A G ? G C T G = ? ? ? ? ? C = G C T = I = = A C A G = C T = G A G G I T C A C C = = C T C G G G G G A = C C A I C T C ? C T C A = 0 E104 G A G = = T = T T G = D = = G T G A = T C = C G C A D C T G T T G = T A = A C A A C G = T = G D G A G C G C T G G A G A = = C = G C T = I = = A C A G = C T = G A G G I T C A C C C = C T = G G G G G A = C = A I C T C G C T C A A 0 E105 = = = = = = = = = = = = = = = = = = C (C) = = = = = = = = = = = = = C = = G = = = = = = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T (T) = = = = = = = = = = = = = T = = C = = = = = = = = C = = = = = = = = = = = 0 E106 G A G = = T = T T G = D = = G T G A = T C = C G C A D = T G T T = = = A G A C A A C G = T T G D G A = ? G C T G G A G A = = C = G C T = I = = A C A G = C T = G A G G I = C A C C = = = T C G G G G G A = C C A I C T = ? C T C A A 0 E107 = = ? ? ? = = = = = = = = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = ? ? ? = = = = = = = = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = 0 E108 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E109 ? ? G G = T D T T = = D = = G T G = C T = T C = C A D = T G T T G = = A G A C A A C ? G T T G D ? ? = ? G C T G G ? ? A A = C I G C = = I = = A C A = T C = C G = G G I = C A C C C = = T C G G G G G ? C C C A I ? ? = ? C T C A A 0 E110 = = = = = = = = = = = (D) = = = C = = T = = = = = = = = = = = = = = T = = C = = = = = = = = C = ? (G) = = = = = = = = = = = = = = = = = = = (I) = = = T = = C = = = = = = = = = = = = = = C = = G = = = = = = = = T = ? (C) = = = = = = = = 0 E111 = = G = = T = T T G = D = = G T = A = T = = C G C A D = T G T T G = T A G A C A A C G = T T G D ? ? = ? G C T G G = = A = = C = G C T = I = = A C = G = C = = G A G G I = C A C C C = C T C G G G G G A = C C A I ? ? = ? C T C A A 0 E112 G A G = = T = T T G = D = = G T G A = T C = C G C A D C T G T T G = T A G A C A A C G = T T G D G A G ? G C T G G A G A = = C = G C T = I = = A C A G = C T = G A G G I T C A C C C = C T C G G G G G A = C C A I C T C ? C T C A A 0 E113 = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = 0 E114 = = G G = T D T T = = D = = G = G = C T C T C = C A D = T G T T G = = A G A C A A C ? G T T G D G A = ? G C T G G = = A A = C I G C = = I = = A = A = T C T C G = G G I = C A C C C = = T C G G G G G ? C C C A I C T = ? C T C A A 0 E115 = = = = = = = = = = ? = = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E116 = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E117 = = ? = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = ? = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = A 0 E118 = = = = = = = = = = = = = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = 0 E119 ? ? = = = = = = = = = = = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E120 = = G G = T D T T = = D = = G T G = C T C T C = C A D = T G T T G = = A G A C A A C G G T T ? ? G A = ? G C T G G = = A A = C I G C = = I = = A C A = T C T C G = G G I = C A C C C = = T C G G G G G A C C C ? ? C T = ? C T C A A 0 E121 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E122 = = = = = = = = = = = (D) = = = = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = T = = = = = = = = = = = = = = = = = = = = = = (I) = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = = = = C = = = = = = = = = = = 0 E123 = = = = = = = = = = = = = = = = = = = = = = = = = = I = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = D = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = END BESTPAIRS2 Phase probabilities at each site with phase known positions indicated by = and missing data positions indicated by ? BEGIN PHASEPROBS ? = = = 0.97 = = = = = = = 0.98 = = 1.00 = = 1.00 = = = = = = = = = = = = = = 1.00 = = 1.00 = = = = = = = = 1.00 = = = = = = = = = = = ? ? = = 0.98 = = = = = = = 0.98 = = 1.00 = = 1.00 = = = = = = = = = = = = = = 1.00 = = 1.00 = = = = = = = = 1.00 = = = = = = = = = = = ? ? ? ? = 1.00 = 1.00 1.00 1.00 = 1.00 0.90 0.85 1.00 1.00 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 ? ? 0.90 = = 0.90 0.90 0.90 0.90 = 0.81 1.00 = = = 1.00 1.00 0.54 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = = = = 0.63 = = = = 0.63 = 0.63 = 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 = = = = 1.00 1.00 = 1.00 = = = = = = 1.00 = 1.00 1.00 = 1.00 1.00 1.00 = 1.00 1.00 = = = = = ? 1.00 = 1.00 1.00 = = 0.81 = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = ? ? = = = = = = = 0.99 = = 1.00 = = 1.00 = = = = = = = = = = = = = = 1.00 = = 1.00 = = = = = = = = 1.00 = ? = = = = = = = = = = = ? ? = 1.00 1.00 1.00 1.00 = = 0.50 = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = ? ? ? ? = ? = = = = = ? 1.00 = 1.00 1.00 = = = 1.00 = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 0.91 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 ? ? 1.00 = = 1.00 = 1.00 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 0.99 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 ? 1.00 1.00 1.00 1.00 1.00 ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.76 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = ? ? = = 1.00 = = = = = = = 1.00 = = 1.00 = = 1.00 = = = = = = = = = = = = = = 1.00 0.51 = 1.00 = = = = = = = = 1.00 = = = = = = = = = = = = = 0.61 1.00 = = 1.00 = = = 1.00 0.60 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.84 = = 1.00 1.00 1.00 1.00 = = 0.94 = = 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = ? 1.00 1.00 1.00 1.00 1.00 ? 1.00 1.00 = = ? = 1.00 1.00 1.00 = 1.00 = = 1.00 1.00 = 1.00 = 1.00 1.00 = = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 ? 1.00 = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = ? ? 0.67 0.93 = 1.00 = 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 = = = = 1.00 1.00 = 1.00 = = = 0.55 = = 1.00 0.67 1.00 1.00 = 1.00 1.00 1.00 = 1.00 1.00 = = = = = 1.00 1.00 = 1.00 1.00 = = 0.87 0.87 = = ? 0.88 0.88 0.88 = = = 0.99 = = 0.99 = 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 ? ? 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = ? 1.00 = 1.00 1.00 1.00 = 0.81 0.99 = = 1.00 = 1.00 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 ? 1.00 1.00 1.00 1.00 1.00 = 0.99 1.00 = 1.00 1.00 1.00 1.00 1.00 = = = 1.00 = 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 0.96 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 1.00 = ? 1.00 1.00 = = 0.93 0.93 0.93 0.93 0.93 0.93 0.93 = = 0.93 0.93 = = = 0.93 0.93 0.93 0.93 0.93 = = = = 1.00 0.90 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 1.00 1.00 1.00 = ? 1.00 = 1.00 1.00 = = 0.78 = = = = = = = = 0.80 = = = = = = = = = = = = = = = = = = 0.79 0.80 = = = 0.75 = = = = = = = = = = = = ? = = = ? = = = = = = 0.88 0.99 = = 1.00 = 1.00 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 ? = 1.00 1.00 ? ? 1.00 1.00 1.00 ? 1.00 1.00 1.00 1.00 = ? 1.00 = 1.00 = = 1.00 = = 1.00 = = = = = = = 1.00 1.00 = = 1.00 = 1.00 = = = 1.00 = = = = = = 1.00 = = = = = = = = 1.00 = = = = = = 1.00 = = = = = 0.96 ? ? ? ? ? 1.00 = 1.00 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 ? 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = = 1.00 = 1.00 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 0.94 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = 1.00 0.61 = = = = = = = = = = = = = 1.00 = = 1.00 = = = = = = = = 1.00 = = = = = = = = = = = 1.00 1.00 1.00 = = 1.00 = 1.00 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = ? 1.00 1.00 1.00 1.00 1.00 = = ? ? ? = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? 1.00 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 = = 1.00 1.00 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 ? 1.00 1.00 1.00 1.00 1.00 ? ? = ? 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = 0.69 = = = 1.00 = = 1.00 = = = = = = = = = = = = = = 1.00 = = 1.00 = = = = = = = = 1.00 = ? 0.50 = = = = = = = = = = 0.91 = = 0.96 = 0.96 0.96 0.96 = 0.96 = = 0.96 0.97 = 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 ? ? = ? 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 = 1.00 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 0.99 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 ? 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = 1.00 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 = = 1.00 = 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 ? 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = ? 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = ? = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = ? ? = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 = = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 ? ? 1.00 1.00 = ? 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.60 = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = END PHASEPROBS