CASR Color FASTA
The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.
*Display courtesy of
GeneSNPs
CAGGAACTTT AAAGCTTCTA GCCACAGCGT TTGAGCTCCC AAGGCTGTCC
50
TTCAGCATCT TCCCAGGCAG CCCTGATTCA
T
TGTGGACTG AAACCTTTCT
100 |
var(81):[C:0.02]
GTCATTCCTT CTATCCACTG GTCATAATAG AGTATGGGCT TGTATTTCCA
150
AA
A
T
T
T
A
A
A
C
A
T
C
A
C
T
G
G
T
C
C
T
A
T
T
A
G
T
T
C
T
T
T
T
A
G
A
T
C
T
T
T
C
T
T
T
C
A
A
G
200 |
REPEAT
T
T
G
C
T
C
A
T
T
T
T
T
C
T
C
A
T
A
T
A
A
G
A
A
A
A
T
T
T
A
C
C
T
T
A
A
A
T
G
G
A
A
A
C
C
A
C
A
T
C
250
A
C
T
T
T
G
T
C
A
G
T
G
G
A
A
A
A
C
T
A
T
G
T
C
A
A
T
T
G
G
A
A
C
T
T
A
A
C
T
G
C
A
T
A
A
G
G
A
A
T
300
A
A
T
A
A
C
A
G
A
T
G
G
A
A
G
A
G
A
A
A
A
C
A
A
T
G
A
T
A
T
T
A
A
A
T
T
C
T
A
C
T
T
A
G
G
A
G
C
T
G
350
T
T
G
C
C
T
A
G
C
A
A
A
G
G
T
T
C
T
G
A
G
T
G
A
G
A
G
G
C
A
A
C
C
T
C
T
G
T
C
T
T
T
G
T
T
A
A
A
A
C
400
A
G
G
A
G
A
T
T
A
G
C
A
A
G
T
G
T
T
A
C
A
G
A
G
G
G
G
T
G
C
A
A
A
G
A
C
A
A
A
T
A
C
T
A
C
A
A
A
A
A
450
T
G
A
T
A
C
T
C
C
T
T
C
C
T
T
G
A
C
A
T
A
A
T
C
C
A
T
A
G
G
A
A
C
A
A
A
A
G
A
A
G
T
A
A
A
A
A
G
G
G
500
C
A
T
A
T
C
T
T
T
T
T
T
C
A
C
C
T
T
G
T
G
A
T
C
C
A
C
T
G
T
T
A
T
C
T
A
A
T
T
G
T
A
T
T
G
T
C
T
G
T
550
G
T
A
C
C
A
C
C
C
A
A
T
A
C
C
A
T
G
C
T
T
C
C
A
A
T
C
T
C
T
A
C
T
G
G
A
A
G
A
T
G
T
A
C
A
C
A
C
T
G
600
G
G
A
C
A
C
A
C
T
G
G
T
A
A
A
G
T
G
A
T
C
A
A
G
C
A
C
C
A
G
G
A
C
T
G
T
A
A
G
T
C
A
A
G
C
T
G
A
T
C
650 |
REPEAT
A
G
G
T
T
C
A
G
C
T
C
T
T
G
G
C
T
C
T
G
C
C
A
A
C
T
C
C
T
A
G
C
C
A
C
C
C
A
A
C
C
C
T
A
A
A
T
A
C
C
700
T
G
A
A
A
C
T
G
T
A
T
G
C
A
T
C
A
G
T
T
T
C
T
T
C
G
T
C
T
T
T
A
A
A
A
T
G
G
A
A
G
C
A
A
T
A
A
T
A
G
750
ATCTTCAGAG TAATA
C
T
T
T
C
T
T
A
A
A
G
A
T
A
G
T
G
C
C
C
A
A
A
T
T
T
G
G
A
C
A
T
T
A
T
800 |
REPEAT
G
C
C
C
A
G
G
T
G
T
A
A
T
C
C
G
A
C
C
A
G
T
G
A
A
G
A
G
C
A
T
C
A
G
T
T
C
A
G
C
C
T
A
A
G
A
T
T
G
C
850 |
var(814):[T:0.02]
A
G
C
C
T
C
A
T
T
C
G
G
G
T
T
T
T
G
A
A
C
T
G
A
A
C
T
C
G
T
T
C
A
G
C
C
T
T
T
G
G
G
T
G
T
T
C
A
C
A
900
A
A
G
C
T
G
T
G
C
T
T
G
T
A
G
C
C
A
A
C
T
A
A
A
A
T
A
A
A
A
T
C
T
A
A
G
G
T
A
T
T
T
T
G
A
T
A
G
G
C
950
A
C
C
A
C
T
A
C
T
G
A
G
C
C
A
C
A
T
C
C
T
C
C
A
T
T
A
C
T
T
A
C
A
T
T
G
C
T
G
G
G
T
G
T
T
T
C
G
G
C
1000
C
T
G
A
G
G
G
A
G
G
A
C
T
T
C
A
C
A
T
T
T
A
T
T
C
C
T
A
T
T
A
A
CCAGATTT TGCCCCCTTC
1050 |
var(1018):[G:0.03]
ACTGGTGCTT TAGCATTTGC TCAGCTCCTT CTCCTACCCT GTATTTGAGG
1100
GAAAGGAAGC CAAATGGGCA GAACTTGGCC ATAATGAGGA TGTGTTTGAC
1150
ATGCTGGATT TGAGTCTGTG TTCCATTGAA GAAAAGAAAT GGAAAC
T
T
T
G
1200 |
REPEAT
|
var(1197):[C:0.01]
T
T
G
A
G
T
A
T
C
C
A
T
T
C
T
A
T
A
C
A
G
G
G
C
A
C
T
T
T
C
C
T
T
G
A
C
T
A
T
T
T
C
A
T
T
T
A
A
C
A
1250
C
T
C
C
A
A
G
G
A
C
C
C
C
C
T
G
A
G
G
T
A
G
A
T
G
T
T
A
T
C
A
C
C
A
T
T
T
T
G
C
A
G
A
G
A
A
G
A
A
A
1300 |
var(1257):[A:0.01]
|
var(1258):[T:0.01]
|
var(1281):[G:0.35]
T
C
T
G
CATTTT TATTTGAAGT TCTTAAACAT GGTAAACGAC CCAATTTTCT
1350
GCTTTTTGCT TAACAGTATT TTGCAAACAT TTTATCATGT TACTTCATGT
1400
TTTCCTATTT TTTTTTTGCT TTATAAATAA ATACATACTC CCTCCTTATT
1450
CT
A
AAAAGAA TTTGAAGCAC TTCTGTCTTG ATGTTTATCA
T
T
T
T
A
A
C
G
G
T
1500 |
var(1453):[G:0.17]
|
REPEAT
|
var(1497):[T:0.12]
T
G
T
A
T
A
A
T
G
T
C
C
C
A
T
T
A
A
G
T
C
A
C
C
C
T
A
A
T
T
T
A
T
T
C
A
A
C
A
A
A
T
T
T
C
C
T
A
C
T
1550
G
T
T
G
A
C
A
G
T
T
T
G
G
C
T
C
T
G
T
T
T
G
C
T
T
T
T
T
G
T
G
G
T
T
T
T
T
A
A
A
A
T
T
A
T
T
T
T
C
T
1600
G
T
A
A
C
A
A
A
T
G
A
T
C
C
T
G
C
T
A
A
A
A
A
A
A
A
A
A
T
C
T
C
C
G
C
A
C
G
A
A
T
A
T
T
A
T
T
T
T
G
1650
T
T
C
T
G
G
A
A
A
T
T
T
C
C
G
C
A
A
G
G
G
T
G
G
A
A
T
A
C
T
G
C
A
T
T
A
A
A
G
G
G
G
A
T
A
A
T
A
T
T
1700
T
T
T
G
G
T
G
T
T
T
C
T
T
T
A
T
A
G
A
G
C
C
T
A
G
C
A
A
A
T
T
G
C
C
CACCCA AAGGAGTATG
1750
CTTTATTTGA GAGTAAAAAG CCAAAAACA
A
A
C
A
AACACAT ACAAAAAAAC
1800 |
var(1780):[:0.64]
TGGTTTTCTA CAAAAGAAAT TAATTT
T
C
C
A
C
T
T
A
T
T
C
A
T
A
A
A
A
T
A
T
T
C
T
A
1850 |
REPEAT
|
var(1836):[G:0.01]
G
T
G
C
T
G
T
G
A
T
G
G
G
T
G
G
C
A
G
G
C
A
C
C
G
T
G
C
C
A
G
G
G
G
C
T
A
G
G
G
A
C
A
A
G
G
A
T
A
A
1900
G
C
A
A
G
G
C
C
A
G
G
T
C
C
G
G
G
C
C
T
C
C
A
A
G
C
A
G
C
G
C
G
C
T
G
T
G
G
A
G
T
C
G
G
G
T
A
G
A
G
1950 |
var(1938):[A:0.02]
T
A
G
A
C
C
A
A
G
T
G
C
A
A
C
A
G
G
C
A
C
C
T
G
G
C
T
G
C
A
G
C
C
A
G
G
A
A
G
G
A
C
C
G
C
A
C
G
C
C
2000 | Exon 1 |
UTR
C
T
T
T
C
G
C
G
C
A
G
G
A
G
A
G
T
G
G
A
A
G
G
A
G
G
G
A
G
C
T
G
T
T
T
G
C
C
A
G
C
A
C
C
G
A
G
G
T
C
2050
T
T
G
C
G
G
C
A
C
A
G
G
C
A
A
C
G
C
T
T
G
A
C
C
T
G
A
G
T
C
T
T
G
C
A
G
A
A
T
G
A
G
T
A
A
G
A
G
T
T
2100
TGGGCACGCG ATTTGTATTT ATTTTACTGT GAATCTCTGG CCTTATATCA
2150
GAAAAAAAAA AATTGTGCCA CCCTCGGCAC AGAGAACGTT GGTGGCGTCG
2200
TAAGCGCCCT AAGCTTCTTT CCATCGCCAA GGAGTAGGGG TCAGGGAAGA
2250
GGACAGCGGG AACAGGATTT GAGAGCCGGG AACCCCTGGC TCGGCACGGG
2300
AGAGGGCAGG AGAGGACCTA AGCGCGGGGC TCGCCGTC
T
G CTGGGGACCC
2350 |
var(2339):[C:0.14]
GAGCCGGCCT GTGGCCCTCG GGGAAC
A
GAA GACGCGCCCT CAGCGACCCT
2400 |
var(2377):[C:0.34]
GAAGAGTCAG CTAAGCTCTC TGCGGGCTAA GGAGACGGTG AAGGAACCGG
2450
GACTAACT
G
G GGTAGGGGTT AGAAGGCAGC CCGCGAGTGG GCTACGAGGG
2500 |
var(2459):[A:0.03]
GAGCTGGGCT CGGCAGTTGG GGACCCCGAG GGGGCAAGCG GGCGGGGAGC
2550
AGGAGAGGGG CGGAGCTCCG GGGCCGGGGC CGGGGCCGCA GCGGCCGCCC
2600
AGAGGGTCTG CGGGGGCTGC TGTGGC
C
GGA CCCGAAGGCG GGCGCCGGGA
2650 |
var(2627):[G:0.07]
GCGCAGCGAG CCAGACGCGC CTCTCCAAGA CCGTGACCTT GGCATAG
G
GA
2700 |
var(2698):[A:0.17]
GCGGGGCTGC GCGCAGTCCT GAGATCAGAC CAGAGCTCAT CCTCGTGGAG
2750
ACCCACGGCC GAGGGGCCGG AGCTGCCTCT GTGCGAGGGA GCCCTGGCCG
2800
CGGCGCAGGT AGGACCGGGG AACCCAAGGA GGGCGGGAGG AAAGCGCCCC
2850
TGGTGGGGGA GGGGCCGTGG CGGGGTCTGG GGGCCAAGGG CTCCGGGCCG
2900
AACGAGGGGC ACACGCCGGA GCAGCTCCAG CCTGGGAGCA TTGGGCGTGA
2950
AC
G
T
G
GGGGA AAGTAGGGAC CAGATTACAG GATCAAGGCT TTCCCCGGCT
3000 |
var(2953):[A:0.01]
|
var(2955):[A:0.06]
CAGAACTGGA TTGTTCAGTG CCCCTAGAAG GGGCAGCGGG TCGCCCACGC
3050
GAATGAACGG GAGCGCGCAC CAAAACGCCT GCTGTTGGTA GTTTCTTGTG
3100
CCTCTGCCTT GTTTCTGCCT GTGATATAGT CAGAAAGGAC TCGCTTGCCA
3150
CGTGTTAACA AGGGGACAGG TAGCTTTTAC AGAGTGTATG AATATGGAGG
3200
GGAGGGCCAC AGAGTCAGCT CTGGCCCCAG GGGCCGTCAG TGCCCCCACA
3250
GGATTCCTGG TCCAAGC
T
AC CAG
C
TGTCTT GGGAACTTTG CTTCAGTGGC
3300 |
var(3268):[A:0.13]
|
var(3274):[A:0.18]
ATCAAATTAG ATTGTCAGTT CCCGGGGCCT GAGCACCAGC CTCCATGTGT
3350
ATTTCCTGGG GAGAAAA
A
AA AAAGGCATAC CAGACTGATG GAGTCTTATC
3400 |
var(3368):[T:0.16]
ATTATTTTAA CATTATAGCT TTCAATAGAT AACATGCATA TGTTTCTTTT
3450
TTTAAGTCAA ATAATACAAA CATTTATCTT CTACA
G
GCAA TGCGTGCACT
3500 |
var(3486):[A:0.05]
AGCATGTGTG TCTATTGCTG T
C
TCCTTTCT ACACCCATAG CCTTTCCCAC
3550 |
var(3522):[A:0.02]
TCTACGTGTT CTGTCGCCGT CTTTTGATTC TTTATCCAGA AAATGATGTC
3600
ACCACCACTG CCCACATCCC TTAATCTCCA GTGTTCCTCC TT
G
CAACGCC
3650 |
var(3643):[T:0.14]
TCTCTTGTCC TCAAATATTT TTCACAAGGT GGTCCTCAGG GTAGGGAGCC
3700
TACTAACGAG AAGACATTTC GTTTACTTGC TTCAATTATC CCAGAGATTT
3750
GAAGAAAAGG CACATTGGGG AAGAGTCCAT GTCAAGTTCT AAACACACTT
3800
ATCTTTCCCC TTAAACTGGA TCTTCCAAGT GCAGTTTAGG TAGTCTGTTA
3850
CTGAGAGAAA TAATGCAGGC TGTTTTCTGA AATGCTCTGG ATTTCCAGAA
3900
CTTAACACCA CAGTAGTTC
C
T
A
T
T
C
C
T
T
A
A
A
A
C
A
G
A
A
C
T
T
C
A
T
C
A
G
T
C
A
C
3950 |
NOT SCANNED
A
C
C
T
T
G
C
T
G
T
T
G
C
T
T
T
T
C
C
C
A
T
C
T
C
C
A
C
T
C
C
A
G
G
A
T
T
C
C
C
T
A
A
C
T
G
G
C
A
T
4000
G
C
C
T
A
G
G
A
T
T
T
T
T
C
C
T
C
T
G
T
A
G
G
A
A
C
C
T
G
G
G
A
G
A
G
C
G
G
G
T
G
C
T
T
T
A
T
A
C
C
4050
T
G
C
C
T
C
C
C
A
G
G
T
G
T
CCAATG AAGGGGCTGA GGGACAAAGC TTTGTGGTGG
4100
ACAAAAGGGG AGGGGAAGAT GTAGGAGAAG TTGGAGGGGA AGTAGGAAGG
4150
AAGAAGCAGG CCAAGACCCT TGAGTAGAGA AGACTCCTCA AGCACAGAGC
4200
CCTGTCATTT GGGAACAGTC TCCATATAAT TTCTAAGAGA CCACACATGC
4250
GAGTTACTTC CTGCCAATA
A
T
CAGCACAGT CAGCTCTGTT CCAAGACTTC
4300 |
var(4270):[:0.17]
TATGCTAGAC CAAAACATAG TAAGTGAAAA AAAAAAATCA GCAAATCAAC
4350
CAGTTTTTGT CTCTATGATA AAAC
A
G
AGTG GTTGAAATTA AATTAGTTAA
4400 |
var(4375):[:0.16]
AAATTTTCTT TTTTACTGAA TTAGCAGGTT CTTTAGGAGC TGTGTCCATT
4450
GTTTAAAATC ACCTAATAGG TACTCCAGTC TCCACATTTT TCCTTTATTT
4500
TGTTTATCTT TTCATATTGC ATAACCTTGA ACTGGATCCC AACCATGTCA
4550
GAAAGTTCAG GCTGATTAGA AGCTGCCACT TCTAAGACTT TTTGGTGGAA
4600
GAGAGTGGGG AGGAGAGGGT GAGAAAATAA TGACTGATCC TTGTGATAGG
4650
GTAGGGGTAT AATGAAGAGG AAGAAGTTAA CTACAAGTTT GAGACTGGTG
4700
AGGAGTTGCA TATAATTCTT AAGATAACAC GGCAATAAGT AAGTAAGAGG
4750
TAAAAAAATC ATTCATC
A
T
T
C
A
T
C
A
T
T
C
A
A
A
A
T
G
T
T
T
A
T
A
G
A
G
T
G
C
C
T
G
G
4800 |
REPEAT
C
T
A
T
G
T
G
C
C
A
G
T
C
A
C
T
G
G
G
A
A
C
T
A
A
C
T
G
G
T
A
T
A
T
A
A
A
A
C
C
A
G
G
T
G
A
G
G
T
C
4850
C
C
T
G
C
T
C
T
C
C
T
G
G
A
G
C
T
T
A
C
A
G
A
T
G
C
T
T
T
G
G
G
G
T
G
G
C
A
G
C
T
G
T
T
A
G
G
A
A
A
4900
A
T
A
A
A
T
A
T
T
G
A
C
T
A
T
A
T
G
T
T
A
T
T
A
C
A
A
A
C
T
A
A
G
A
T
A
A
A
C
T
G
T
C
T
G
A
A
G
G
A
4950
A
A
G
A
A
A
C
G
A
A
G
T
T
C
T
T
T
G
A
G
G
G
T
G
T
A
T
A
C
A
G
A
C
T
G
A
A
C
T
G
T
G
A
G
A
C
C
A
G
G
5000
G
A
A
G
C
C
T
T
T
C
T
C
A
A
G
G
A
G
A
T
C
T
C
C
C
T
T
G
A
G
C
C
A
A
G
A
T
T
C
A
A
A
G
A
T
G
G
A
G
A
5050
G
G
A
A
G
GTTGA GGATATATTT GTTGTTTACG TAGGACCAGA
G
TGTATCCAC
5100 |
var(5091):[A:0.35]
TAGGAATGGT GTTTGGCTGC TAGTCATTAA GAAGACTAAC TGCCATGTGA
5150
CATTTGCTGT ACTACATGAG CACATGTGCC AACTTGGCAT TTTT
G
GCACT
5200 |
var(5195):[C:0.31]
TTGGGAAAGA ATGCTTTGTT ATCACAGTAT CAGTTGCATT GTCTTCAGTT
5250
GGTCATGGTT TGCCATTGCT GTATTCTTGC TTTATAATTA AATGTTTCAA
5300
TTAACTTTAT GCTTATCCAC TTATTTTATT GTGTACAATA AAATGTGTGC
5350
ATTGCAGTTC AAATGTGAAT CATCCATATT CCCATTAATA AGGTAAATAT
5400
ATATATAACC CTGATACCAA ATGTGGTTTA TACACTG
A
CT GTTCAATGTT
5450 |
var(5438):[T:0.15]
ATCACTAAAT AGATTCTTTA GGTGAAAATA
G
G
T
G
T
G
G
C
A
G
G
T
G
G
G
C
T
G
T
A
5500 |
NOT SCANNED
A
T
A
T
C
T
T
C
C
T
T
C
C
A
T
C
C
C
T
A
G
C
C
A
C
T
G
C
T
C
T
A
A
T
T
G
G
G
A
G
G
A
T
G
C
C
A
G
A
A
5550
T
T
T
T
T
C
A
A
T
T
A
T
T
C
T
A
A
A
G
C
T
G
C
A
T
G
A
T
C
C
T
T
T
T
C
A
A
A
G
A
T
T
C
A
T
A
T
A
T
A
5600
G
C
T
C
T
T
T
A
G
T
A
A
A
G
A
A
A
A
A
A
A
A
T
C
A
C
C
A
A
T
T
G
C
A
C
T
G
A
A
G
C
A
A
C
A
T
A
T
T
T
5650
A
A
C
A
T
T
C
A
A
A
C
A
A
A
T
A
T
T
T
T
T
A
T
T
C
A
T
T
C
G
A
C
A
G
T
G
T
T
T
A
C
A
G
T
A
A
A
C
C
T
5700 |
REPEAT
T
G
T
A
T
G
T
G
C
T
C
A
G
A
G
C
T
G
T
G
C
T
A
G
A
C
A
G
T
A
T
A
A
T
T
A
A
A
A
C
T
G
A
T
T
A
C
T
A
G
5750
G
A
C
A
G
A
G
T
C
C
C
A
A
C
A
T
T
T
A
A
G
G
A
G
T
T
C
A
T
A
G
A
A
G
T
C
T
G
A
G
A
G
G
G
A
G
T
C
A
T
5800
G
C
T
C
A
T
C
C
A
T
G
T
G
C
A
G
G
T
A
G
T
A
T
T
G
T
G
T
T
C
A
T
T
A
C
A
A
T
T
A
A
A
G
C
A
T
A
A
T
C
5850
A
G
G
G
T
A
C
G
T
T
C
A
T
G
T
A
T
A
A
G
G
G
A
A
G
G
G
A
G
T
G
G
T
C
A
A
T
T
C
T
A
C
C
A
A
A
G
G
A
G
5900
G
A
A
G
G
G
T
C
A
G
G
G
A
A
A
G
G
T
T
C
T
T
G
G
A
G
G
A
G
G
T
A
A
C
G
C
T
T
G
A
G
T
T
G
A
A
T
C
T
T
5950
G
A
A
A
G
A
T
G
A
G
G
A
G
T
G
A
C
A
C
C
A
G
G
T
A
G
A
C
A
A
A
A
G
A
A
G
A
A
G
G
T
A
T
A
A
T
G
G
G
A
6000
G
A
G
A
G
A
T
T
C
A
T
G
T
G
C
A
A
A
A
A
C
A
A
G
C
A
A
T
T
A
A
C
A
A
C
A
A
C
T
A
A
A
C
C
A
G
A
G
G
C
6050
A
T
G
A
A
A
C
A
T
C
A
T
G
T
C
A
A
G
T
T
C
T
A
G
G
A
C
C
T
G
C
A
A
G
T
G
G
T
T
C
A
A
G
G
A
G
C
T
G
A
6100
A
G
C
A
T
A
A
G
G
A
G
C
C
A
A
G
A
G
G
T
A
G
G
G
A
G
G
C
T
A