Site Allele1 AD-pop ED-pop Total-pop Allele2 AD-pop ED-pop Total-pop 000103 A 0 5 5 G 46 41 87 000434 C 0 1 1 T 48 45 93 001568 G 2 0 2 C 46 46 92 002210 + 19 10 29 - 27 34 61 002730 A 11 4 15 G 35 42 77 002815 C 2 0 2 T 46 46 92 005343 C 22 10 32 T 26 36 62 005484 T 0 22 22 G 46 24 70 005663 - 2 0 2 + 44 46 90 006185 T 0 5 5 G 48 41 89 006198 G 0 2 2 C 48 44 92 006227 A 22 10 32 G 26 36 62 006909 G 0 1 1 A 40 45 85 007065 C 0 1 1 T 40 43 83 007222 G 6 0 6 A 34 46 80 007388 C 1 0 1 T 39 46 85 007426 G 3 0 3 A 39 46 85 007711 G 11 3 14 T 33 43 76 007744 T 0 2 2 C 44 44 88 007793 G 2 0 2 A 42 46 88 007929 A 2 0 2 G 42 46 88 008899 G 1 0 1 A 41 46 87 009671 A 0 3 3 G 48 43 91 013809 T 0 2 2 C 48 40 88 013960 C 1 0 1 G 45 46 91 014047 G 1 0 1 A 43 44 87 014229 A 12 4 16 G 32 40 72 014342 A 0 1 1 T 44 43 87 014353 T 0 20 20 A 44 24 68 014615 G 2 0 2 T 40 44 84 014673 C 2 0 2 T 40 44 84 014683 A 2 1 3 C 40 45 85 014729 - 23 13 36 + 17 31 48 014769 A 4 8 12 G 22 34 56 014938 G 0 1 1 A 46 43 89 016132 A 0 19 19 G 32 21 53 016741 A 2 0 2 T 44 46 90 016762 G 18 10 28 A 28 34 62 016882 G 1 0 1 T 43 46 89 016910 G 18 10 28 A 26 36 62 016977 - 1 0 1 + 43 42 85 017025 - 19 10 29 + 27 34 61 017130 A 17 11 28 T 29 35 64 017232 A 2 0 2 T 38 44 82 017724 T 5 0 5 C 37 42 79 018068 A 2 0 2 G 44 40 84 018106 T 1 0 1 C 41 40 81 018270 - 20 10 30 + 26 32 58 018274 G 1 0 1 A 45 42 87 018317 C 0 2 2 A 48 40 88 018415 T 5 3 8 C 43 39 82 018608 G 0 1 1 A 48 43 91 018760 A 19 10 29 G 29 34 63 019101 + 6 0 6 - 34 34 68 019251 G 12 6 18 C 26 34 60 019633 C 0 1 1 T 46 45 91 019700 G 0 2 2 A 46 44 90 020917 - 9 25 34 + 37 19 56 021467 C 0 7 7 T 48 37 85 021550 T 14 10 24 C 34 34 68 021987 G 0 7 7 A 46 39 85 022451 A 7 25 32 C 41 21 62 022520 G 19 10 29 T 29 36 65 022537 A 6 0 6 G 42 46 88 023324 A 17 9 26 G 25 35 60 023583 A 0 1 1 G 42 45 87 023657 A 3 0 3 T 39 46 85 023835 C 2 0 2 A 7 24 31 G 31 20 51 024438 T 5 3 8 C 39 43 82 024603 C 3 0 3 G 41 46 87 024754 G 3 0 3 A 41 46 87 024822 A 0 22 22 G 44 22 66 024838 T 1 0 1 A 43 44 87 025893 A 18 9 27 G 28 35 63 025920 C 2 0 2 T 44 44 88 026064 A 19 10 29 G 29 36 65 026457 T 0 2 2 C 44 40 84 026891 C 8 23 31 T 36 21 57 026935 T 2 0 2 C 44 44 88 027077 G 7 0 7 A 41 46 87 027366 A 10 4 14 G 32 42 74 027402 T 2 0 2 G 40 46 86 028912 T 19 11 30 C 29 35 64 029879 + 18 10 28 - 26 28 54 029959 A 2 18 20 G 46 20 66 030109 C 11 6 17 A 37 36 73 030150 T 5 0 5 A 43 42 85 030230 T 5 0 5 A 43 44 87 030464 C 19 10 29 T 25 34 59 030523 G 19 10 29 A 27 34 61 031401 A 26 20 46 C 22 26 48 031402 A 1 0 1 G 47 46 93 031935 T 2 0 2 A 44 46 90 032042 G 7 0 7 A 39 46 85 032158 T 6 7 13 C 42 39 81 032179 T 6 0 6 C 42 46 88 032319 G 19 13 32 A 29 33 62 032607 G 3 0 3 A 45 46 91 032687 C 25 20 45 T 23 26 49 032694 C 6 7 13 G 42 39 81 032773 G 1 0 1 T 47 46 93 032810 G 6 7 13 T 42 39 81 033022 C 25 20 45 T 23 26 49 033039 + 6 7 13 - 42 39 81 034453 T 0 22 22 C 48 22 70 034556 C 0 1 1 G 48 45 93 034677 A 6 0 6 G 38 46 84 035338 A 6 0 6 G 40 44 84 035770 G 6 7 13 T 40 37 77 036310 G 25 20 45 A 23 26 49 036353 G 2 0 2 A 46 46 92 037543 C 5 0 5 T 43 46 89 038068 G 6 7 13 C 40 39 79 038411 A 0 1 1 G 46 43 89 038451 + 6 7 13 - 40 37 77 038699 C 14 9 23 G 20 25 45 038886 T 2 0 2 C 44 44 88 038946 T 6 7 13 C 40 37 77 038999 G 2 0 2 A 44 44 88 039570 G 0 7 7 A 48 39 87 042858 C 1 0 1 T 41 44 85 042932 C 1 0 1 T 41 44 85 042966 G 5 7 12 A 37 37 74 043286 A 11 4 15 G 31 40 71 043341 G 0 5 5 A 42 39 81 043457 G 5 7 12 A 37 37 74 044031 T 19 12 31 G 21 30 51 044231 C 1 0 1 T 43 46 89 044473 A 2 0 2 G 44 46 90 044625 A 23 14 37 T 21 32 53 045267 A 0 20 20 G 44 24 68 045351 C 2 0 2 T 42 44 86 045802 C 0 1 1 T 48 43 91 047068 A 1 0 1 G 45 46 91 047206 - 10 8 18 + 36 38 74 047463 A 1 0 1 G 45 44 89 047469 C 24 14 38 G 22 30 52 047664 A 23 14 37 G 21 30 51 047679 A 19 14 33 G 19 30 49 053992 T 5 0 5 C 43 42 85 054145 A 0 22 22 G 38 22 60 054295 A 6 22 28 G 32 22 54 054361 G 0 22 22 C 38 22 60 054381 - 5 22 27 + 33 22 55 054636 A 2 0 2 G 46 46 92 054711 - 0 1 1 + 48 45 93 055108 T 2 0 2 G 44 46 90 055216 T 15 27 42 C 31 19 50 055424 T 9 22 31 C 35 24 59 055463 T 1 0 1 C 43 46 89 055598 A 6 0 6 C 42 46 88 055651 A 7 0 7 G 41 46 87 055836 C 2 5 7 T 46 41 87 055897 T 1 0 1 G 47 46 93 056043 G 0 19 19 A 44 23 67 056117 A 0 1 1 G 44 43 87 056269 A 4 0 4 G 40 42 82 056848 G 0 5 5 C 48 41 89 057056 T 15 27 42 C 33 19 52 060254 C 2 0 2 T 44 46 90 060624 A 8 0 8 G 40 44 84 060868 A 1 5 6 C 47 41 88 060893 G 7 0 7 A 39 46 85 061192 T 2 0 2 C 42 44 86 061215 G 4 5 9 A 40 39 79 061607 G 2 0 2 A 46 44 90 061611 A 1 0 1 G 47 44 91 061672 A 3 0 3 G 45 46 91 061827 T 1 0 1 C 39 44 83 062566 C 2 0 2 T 46 46 92 062577 A 1 0 1 G 47 46 93 062594 A 4 0 4 G 44 46 90 062595 A 4 0 4 C 44 46 90 062668 C 7 27 34 T 41 19 60 062752 A 4 0 4 C 44 46 90 062807 C 6 5 11 T 42 41 83 062820 A 0 5 5 G 48 41 89 063534 T 1 0 1 C 47 46 93 063546 A 1 0 1 C 47 46 93 063613 G 5 0 5 C 43 46 89 068652 G 1 4 5 A 47 36 83 068778 T 2 0 2 A 46 42 88 068852 G 0 1 1 A 48 41 89 069751 G 3 0 3 A 43 46 89 069934 A 1 0 1 G 45 46 91 069971 A 5 5 10 G 41 41 82 070216 C 0 5 5 T 46 37 83 070392 T 0 1 1 A 44 39 83 070413 T 0 1 1 C 44 39 83 070547 A 6 5 11 G 40 41 81 070756 A 4 0 4 C 42 46 88 070788 T 2 0 2 C 44 46 90 071062 T 1 0 1 C 43 42 85 071129 A 0 2 2 G 44 40 84 071160 G 3 0 3 A 43 42 85 071432 + 1 0 1 - 43 42 85 071450 T 1 0 1 C 43 42 85 071532 A 11 6 17 G 31 36 67 071606 G 1 0 1 T 45 44 89 071651 C 18 16 34 T 28 28 56 071773 G 2 0 2 C 44 46 90 071853 C 2 0 2 G 44 46 90 072647 A 0 3 3 C 46 43 89 074476 A 10 19 29 G 38 27 65 074909 A 0 5 5 G 46 37 83 075132 T 0 1 1 A 46 41 87 075661 G 2 0 2 A 46 46 92 075874 T 6 0 6 C 42 44 86 076106 A 0 1 1 G 48 45 93 076157 G 1 0 1 A 47 44 91 076274 C 1 0 1 T 47 44 91 076354 G 17 6 23 A 31 38 69 076367 C 1 0 1 T 47 44 91 076749 T 11 6 17 C 37 40 77 077324 A 7 0 7 G 41 46 87 077429 G 30 11 41 C 18 35 53 077451 A 17 6 23 G 31 40 71 077732 A 7 0 7 G 41 46 87 078218 + 17 6 23 - 31 34 65 078340 T 6 0 6 C 42 42 84 078385 C 0 1 1 T 48 41 89 078402 A 2 0 2 G 46 42 88 078767 G 3 0 3 C 45 42 87 078915 A 6 0 6 T 42 46 88 080151 C 2 0 2 T 46 44 90 080179 - 28 5 33 + 20 39 59 080466 A 3 0 3 G 37 44 81 080629 T 2 0 2 C 44 44 88 080691 A 2 0 2 G 44 44 88 080830 G 0 2 2 A 48 42 90 080840 A 0 5 5 G 48 39 87 081045 A 1 0 1 C 45 44 89 081163 C 11 5 16 T 37 39 76 081299 G 11 5 16 A 37 39 76 081337 G 28 11 39 T 20 33 53 081918 C 4 0 4 T 44 46 90 082642 - 1 0 1 + 45 44 89 082886 + 9 4 13 - 33 38 71 083092 T 26 4 30 C 22 36 58 083262 C 1 0 1 T 47 40 87 083313 T 8 0 8 G 40 46 86 083755 - 3 0 3 + 41 44 85 083811 A 7 2 9 G 37 42 79 083866 A 4 0 4 G 40 44 84 083932 G 9 0 9 A 35 44 79 083946 C 23 6 29 T 21 38 59 087747 + 0 3 3 - 48 43 91 087775 A 6 0 6 G 42 46 88 087824 T 2 0 2 C 46 46 92 087843 G 1 0 1 A 47 46 93 087916 A 1 0 1 G 47 46 93 088355 G 7 2 9 A 41 44 85 088471 C 5 4 9 T 39 40 79 088529 A 5 2 7 G 37 42 79 088574 C 0 4 4 A 42 40 82 088724 A 4 4 8 G 42 40 82 088872 + 10 0 10 - 34 44 78 088962 G 10 0 10 A 36 44 80 088977 T 15 4 19 C 31 40 71 089993 C 26 6 32 T 22 40 62 090122 G 3 0 3 A 45 46 91 090263 T 4 0 4 C 44 46 90 090487 - 2 0 2 + 46 46 92 090890 C 12 0 12 G 34 44 78 090967 T 5 4 9 C 41 40 81 091022 G 2 0 2 T 44 44 88 091091 T 17 4 21 C 31 42 73 091111 T 26 6 32 G 22 40 62 091150 G 0 24 24 A 48 22 70 091389 G 8 0 8 A 38 46 84 091451 A 0 4 4 G 48 42 90 091489 C 8 0 8 G 40 46 86 091720 - 2 0 2 + 44 44 88 092073 - 1 0 1 + 47 46 93 092142 + 26 6 32 - 22 40 62 092307 C 0 4 4 T 48 42 90 092354 C 6 12 18 T 38 32 70 092775 T 5 2 7 C 39 42 81 092853 T 0 4 4 C 44 40 84 092932 - 21 6 27 + 19 38 57 093614 A 26 6 32 T 22 40 62 093657 + 12 0 12 - 36 46 82 093963 T 12 0 12 A 36 46 82 094020 G 8 0 8 A 34 46 80 094188 G 1 0 1 A 43 44 87 094245 T 2 0 2 G 42 44 86 094666 A 3 0 3 G 43 46 89 095168 T 26 6 32 C 22 40 62 095180 G 2 0 2 A 46 46 92 095489 T 17 4 21 G 31 40 71 095920 T 11 0 11 A 31 46 77 095932 C 11 0 11 G 31 46 77 095940 A 5 4 9 G 37 42 79 096332 T 0 1 1 C 44 45 89 096663 T 34 6 40 G 14 40 54 097114 T 33 6 39 G 13 40 53 097220 - 1 0 1 + 45 46 91 097663 G 22 6 28 A 20 38 58 097762 T 6 0 6 A 36 44 80 097822 G 26 6 32 A 22 40 62 097954 T 0 1 1 C 48 45 93 098280 T 2 0 2 C 44 46 90 098346 G 1 0 1 A 45 46 91 098400 G 5 4 9 A 41 42 83 098552 G 0 1 1 A 46 45 91 098597 C 0 1 1 A 48 45 93 098799 G 3 0 3 T 45 42 87 099007 A 0 21 21 G 48 21 69 099016 A 12 0 12 G 36 42 78 099065 T 3 0 3 C 45 42 87 099167 T 5 0 5 C 37 38 75 099213 A 1 0 1 G 41 34 75 099216 G 30 2 32 A 12 32 44 099293 + 5 4 9 - 43 38 81 099337 G 0 1 1 A 48 45 93 100024 A 1 0 1 G 47 46 93 100064 A 0 1 1 G 48 45 93 100109 C 9 0 9 T 29 42 71 100507 T 16 3 19 C 26 39 65 101022 + 0 2 2 - 48 44 92 101173 G 12 0 12 C 36 46 82 101324 C 1 0 1 A 43 44 87 101344 G 5 2 7 C 39 42 81 101596 - 2 0 2 + 42 44 86 101622 A 3 0 3 G 41 44 85 Note: ED : European Descent AD : African Descent pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 002210: T 005663: C 014729: AGCTAC 016977: TGTT 017025: A 018270: GGAA 019101: GT 020917: GTAA 029879: AT 033039: T 038451: A 047206: T 054381: A 054711: G 071432: A 078218: T 080179: GTTT 082642: CCT 082886: TAATTATTTAAGTTAATTATTTAAAGACTT 083755: G 087747: TTTG 088872: T 090487: G 091720: A 092073: A 092142: T 092932: C 093657: A 097220: CT 099293: A 101022: G 101596: T