C3AR1 Color FASTA
The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.
*Display courtesy of
GeneSNPs
A
C
A
A
A
A
C
A
A
T
A
T
G
C
G
T
A
G
T
A
G
A
A
T
A
T
G
C
G
T
A
T
T
T
A
A
G
A
G
A
G
A
G
A
C
T
A
C
A
T
50 |
NOT SCANNED
C
T
G
G
A
A
A
G
T
G
G
A
A
A
G
A
G
G
A
T
A
G
C
T
A
G
G
T
G
T
T
T
A
G
G
A
A
A
T
T
T
T
G
G
T
T
T
T
T
A
100
C
T
T
T
A
A
T
C
T
T
C
T
C
A
T
A
T
T
T
A
A
T
T
T
T
T
A
C
C
A
T
G
G
G
G
A
A
T
T
A
A
T
T
G
T
T
T
T
T
A
150
T
A
A
A
A
T
A
T
A
T
T
T
T
A
A
T
T
A
G
A
T
A
T
A
T
A
T
G
T
A
C
A
T
A
T
A
T
G
A
T
A
A
T
C
C
T
A
C
A
T
200
T
T
T
ATATGCT TTCTGGATAC CTATATTATT CAATATTTCC AAATATTGGA
250
GGAAAGAAAA CCC
A
A
A
A
T
A
A
T
C
A
A
T
A
G
G
A
T
T
A
T
A
T
G
T
A
C
T
A
A
C
A
T
G
G
A
A
G
300 |
REPEAT
|
var(275):[C:0.01]
T
A
T
G
T
T
T
T
G
A
T
A
T
A
T
T
G
T
T
A
A
G
T
A
A
A
A
A
A
G
C
A
A
G
A
C
A
T
A
A
A
A
T
C
A
C
A
C
A
T
350 |
var(310):[G:0.01]
A
A
A
T
T
A
C
C
A
T
C
C
C
A
T
T
T
A
T
G
T
T
C
A
A
A
A
C
T
A
C
C
T
T
T
T
A
G
A
A
A
A
A
T
G
T
G
T
G
T
400
T
A
G
G
C
C
G
G
G
T
G
G
G
G
T
G
G
C
T
C
A
C
A
C
C
G
G
T
A
A
T
C
A
C
A
G
C
A
C
T
T
T
G
G
G
A
G
G
C
T
450 |
REPEAT
G
A
G
G
C
A
G
G
T
G
G
A
T
C
A
C
C
T
G
A
G
C
T
C
A
G
G
A
G
T
T
C
A
A
G
A
C
C
A
G
C
C
T
G
C
C
C
A
A
C
500
A
T
G
G
C
A
A
A
A
C
C
C
C
A
T
C
T
C
T
A
C
C
G
A
A
A
A
A
A
T
A
T
A
A
A
A
A
T
T
A
G
C
C
G
G
T
T
G
T
G
550 |
var(546):[C:0.24]
|
var(548):[T:0.03]
G
T
G
G
C
A
C
A
T
G
C
C
T
G
T
A
G
T
C
C
C
A
G
C
T
A
C
T
A
A
G
G
A
G
G
A
T
G
A
G
G
T
G
G
G
A
G
A
A
T
600 |
var(563):[G:0.01]
T
G
C
T
T
G
A
A
C
C
T
A
G
G
A
G
G
C
A
G
A
G
G
T
T
G
C
A
G
T
G
A
G
C
C
A
A
G
A
T
G
G
T
G
G
C
A
C
T
G
650
C
A
C
T
C
C
A
G
C
C
T
G
G
G
C
G
A
C
A
G
A
C
T
G
A
G
G
C
C
C
T
G
T
C
T
C
C
A
A
C
A
A
A
C
A
A
A
A
T
G
700 |
REPEAT
T
G
T
G
C
T
A
T
A
T
T
C
A
G
A
A
A
A
A
A
A
A
A
A
A
T
C
A
G
G
A
A
G
A
A
T
G
A
A
C
A
C
T
A
A
C
C
T
A
T
750
T
A
A
A
A
A
T
A
G
T
T
A
C
T
T
C
G
A
G
C
A
G
T
G
G
A
A
T
T
G
A
A
A
A
GAAAAT CTTTCATTTT
800
TTTTACCCAT TATAATTCTG TATTATTTCA ATTTATCTCT TCTAG
A
ACAA
850 |
var(846):[G:0.01]
AGTATGTTCT ATTTTTGTAA TTAGATGATG ACAATGGAAA TAAACTAATA
900
AATACTACTC AACTCTTGGC ATTTTTCTTT TGATCTTTCT GCCTCAAAAA
950
TATTCCGTGG TGACTTGACT GCAAACAAGC AGAGGAGCAG ATATTATGGT
1000
TTGGACAAGT TGATTAATAT AGACTGAAGC CTATATCA
C
A GACAACAGTG
1050 |
var(1039):[T:0.11]
TTCAAATACA TTTGACCCAA ATAAACTTTA TTTTATATGC ATATATCTAA
1100
AAGAGTATAT GCATATATCT AAAAGAATAA TATAAGAATT ATTTACAGCA
1150
TAGTATTCAT TAAGCAGGAA TTACCTTCAG TCTTCTGTAC TCCTTCCTGA
1200
TGAAACAGCA CCTAGACTCC AGCCTGTTCT CCAGTGACCA CTAAGCTCTC
1250
CCACCTACCT CCCCACCTAC CTGCCCTCTA CCACCTACCT GCCTTTGACT
1300
AGGCTCCACT TATAGCCTAA GCAGCTTTTC ACCTTTTTCT GTCTCTAGAA
1350
TTCCTACAGG TACTTAATTA AGTACTTGCC CACATCTTAT TTCTATCTTA
1400
AGACTCTCCT AGATTGCCCT GGGTTATATA TACCCCTGGC TAGAGTGTTC
1450
TATTATTTTA CTT
C
TATTGT TACTTCTATT ATTATAGCCT AGTTTGTATT
1500 |
var(1464):[T:0.03]
ACAGCTTTGT GTGTATATGT ATGGGTACAT ATTCCCACTC GATTGTGAAT
1550
CTCTGGAGAT TAGAATATAG CTTAATTCAT CCTGATTTTG ACATGGCACC
1600
GTTTTTCACA TATATCAAGC ATTTCAGATA TGTTATTTGA GATTAATTAA
1650
ATGAGTTTAT TCAGGTCATT CCTCCCCAAC CACTCCCCAC TCCAACCCTC
1700
ACATCTCATA GAGTCTTTTT TTTTTCATTT CTAAACAAAA CCTATAAAGT
1750
TGAACCCTAT GTACAGAGGT ACCCTCTCTC TAACCATTCT CTGTGTGCTG
1800
CAGAAAATGT CTCAGGATTA TAAACTCCTA CTTCTGTTTT CCTGCTTTGC
1850
CTTTCTAAGC CATTTAGAAA TGACTCACTT TGAAACTCTT CCTGTGAGGT
1900
CAGATAGTGG TCTAGAGCAT AAGACTTAAC TTATTGCCGG AAACAGAGAG
1950
AGAACAGAAG AAGAGAAAGC TCAGCAAATT TTCTTGCCAT ACTTCATGAC
2000
TTC
A
C
T
G
T
G
G
C
T
A
A
G
T
G
T
G
G
G
G
A
C
C
A
G
A
C
A
G
G
A
C
T
C
G
T
G
G
A
G
A
C
A
T
C
C
A
G
2050 | Exon 1 |
UTR
G
T
G
C
T
G
A
A
G
C
C
T
T
C
A
G
C
T
A
C
T
G
T
C
T
C
A
G
T
T
T
T
T
T
G
GTAAG AAAACCTAGA
2100
CCTACCTGAT GACTTGTGCT TAGCCTGTTT TGCTCATTAT AGGTAATGAG
2150
TTTGAGTGTC ACTATCTTCT ATTTCCCCTA TTCCTTCTCT GACTTTGAAT
2200
TCTTTTATCT TATCTCTATG
T
CTAACTTCC TTTTTCTAAA TATTCCACAT
2250 |
var(2221):[C:0.01]
TGCATTTGTC TTTGCTTTTA ATATTTTCAT AGTGGAATTA ATAGTGAATT
2300
TTTAC
A
TCAT TTCTTTCCTT TCTTTGAATT GGCTATGTAT TTCACCCTGA
2350 |
var(2306):[G:0.11]
ACTTTGATTC CAGCTGTCCC CATTAATTTG TTTTTCAAAT AATTGATTGC
2400
ACTTTTTTTC CCTTTCCATT TCCTCTTTCT TTTTTTTATT
C
TTTTGCCCA
2450 |
var(2441):[A:0.01]
TTCCTTATTG CTACTGACTC TGTTATCCTA TTACTACAAT TTGATTCTGG
2500
GGTCCACTTT TCTTTCTCTA TCACAGTGGA ATTTTAGTTT CAGGATATTA
2550
ATTACCTTTA AATTAC
G
GCT GGTCAACTTA GTAATAATTT TTTT
T
AATCC
2600 |
var(2567):[T:0.25]
|
var(2595):[:0.02]
TCTACTAATC TTAAACACAT AAAGGTATGG TATTTTTAGC CAAATTAACT
2650
TGAAGAAATG TAAAAAGTAA TCTTGCTCTG CAGGAC
T
T
T
T
T
T
T
T
T
T
T
T
T
T
2700 |
REPEAT
T
T
T
T
T
T
T
T
T
G
A
G
A
C
A
G
A
G
T
C
T
C
A
C
T
C
T
G
T
T
G
C
C
C
A
G
G
C
T
G
G
A
G
T
A
C
A
G
T
A
2750
G
C
A
T
G
A
T
C
T
C
A
G
C
T
C
A
C
T
G
C
A
A
C
C
T
C
C
G
C
C
T
C
C
C
A
G
G
T
T
C
A
A
G
C
G
A
T
T
C
T
2800
C
C
T
G
C
C
T
C
A
G
C
C
T
C
C
T
G
A
G
T
A
G
G
T
G
G
G
A
T
T
G
C
A
G
G
C
A
C
G
T
G
C
T
A
C
C
A
C
A
C
2850
C
C
A
G
T
T
A
A
A
T
T
T
T
T
T
T
G
T
A
T
T
T
T
T
A
G
T
A
G
A
G
A
C
A
G
G
G
T
T
C
C
A
C
C
A
T
G
T
T
G
2900
G
C
C
A
G
G
T
T
G
G
T
C
T
C
A
A
A
C
T
C
C
T
G
A
C
C
T
C
A
G
G
T
G
A
T
C
T
A
C
C
C
G
C
C
T
C
T
G
C
C
2950
T
C
C
C
A
A
A
G
T
G
C
T
G
G
G
A
T
T
A
C
A
G
G
C
G
T
G
A
G
C
C
A
C
C
A
C
A
C
C
C
A
G
C
C
TTGTTC
3000
TAAAGGACTT TTAATCCCTG ACTCCTAC
A
T ACTTTCATTT CAAAACAGAT
3050 |
var(3029):[G:0.04]
AATAACAATA TTTAACATAT AGCTCATGAC AGATAACTCT ATTTTTATT
A
3100 |
var(3100):[G:0.02]
AAATTTTGCT GTTTGCAGTC CCTGCTACTT CAGTTCATGC AGTTCTCGGC
3150
AG
C
T
T
C
C
C
C
T
T
T
A
T
T
A
G
C
A
A
T
A
C
C
A
T
A
T
A
T
C
T
T
T
T
T
T
T
T
T
T
T
A
A
T
G
T
G
A
T
3200 |
NOT SCANNED
T
T
T
T
T
T
T
T
T
T
T
T
T
T
G
G
T
A
G
T
A
A
A
A
A
C
A
G
C
A
T
T
T
G
C
C
T
A
A
C
A
G
T
C
C
T
C
G
G
A
3250
C
C
T
G
A
A
A
T
C
C
A
A
G
A
A
C
C
T
C
C
C
T
A
G
T
A
A
T
G
A
T
T
A
T
A
TGCTT GTAATCTAAT
3300
TTGCTGAGTT TCACTGTCAA ACTTGAGAAA TAAAAGCAGA GAAAACGTAG
3350
G
C
T
G
G
G
C
A
C
A
G
T
G
G
C
T
C
A
T
G
T
C
T
G
T
A
A
C
C
C
C
A
G
C
A
C
A
C
T
G
T
G
A
G
G
C
C
A
A
C
3400 |
REPEAT
A
T
G
G
G
A
G
G
A
T
T
G
C
T
T
G
A
G
T
C
C
A
G
G
A
G
T
T
T
G
A
G
A
G
C
A
G
C
T
T
G
G
G
C
A
A
C
A
T
A
3450
G
C
A
A
G
A
C
C
C
T
A
T
C
T
C
T
ACAA ACA
A
A
C
A
A
A
C
A
A
A
C
A
A
A
C
A
A
C
A
A
C
A
A
C
A
A
C
3500 |
NOT SCANNED
|
REPEAT
A
A
C
A
A
A
A
T
G
A
G
G
A
G
A
G
G
A
G
A
G
A
T
G
A
T
T
A
C
C
A
A
G
T
T
T
T
C
T
T
T
C
A
G
C
C
C
T
A
G
3550 |
REPEAT
C
A
T
C
C
C
A
T
G
A
C
T
C
T
A
T
T
C
T
T
C
T
C
T
C
A
A
T
A
T
T
T
T
A
G
G
G
G
G
G
T
A
C
C
G
T
G
A
T
A
3600
G
T
A
T
T
T
A
A
A
T
A
T
C
T
G
A
G
T
A
G
A
C
A
A
G
G
C
C
A
T
G
G
A
A
A
G
G
G
G
A
A
T
G
A
G
A
A
T
A
A
3650
T
T
T
C
T
T
C
T
T
C
T
T
T
T
T
T
T
T
T
T
T
T
T
G
A
G
A
T
G
G
A
G
T
T
T
T
G
C
T
T
T
T
G
T
T
G
C
C
C
A
3700 |
REPEAT
G
G
C
T
G
G
A
G
T
G
T
A
G
T
G
G
C
G
C
A
A
C
C
T
C
G
G
C
T
C
A
C
C
A
C
A
A
C
C
T
C
T
G
C
C
T
C
C
C
A
3750
G
G
T
T
C
A
A
G
C
G
A
T
T
C
T
C
C
T
G
C
C
T
C
A
G
C
C
T
C
C
T
G
A
G
T
A
G
C
T
G
G
G
A
T
T
A
C
A
G
G
3800
C
A
T
G
T
G
C
C
A
C
C
A
T
G
C
C
C
G
C
C
T
A
A
T
T
T
T
G
T
A
T
T
T
T
T
A
G
T
A
G
A
G
A
C
A
G
A
G
T
T
3850 |
var(3818):[A:0.34]
T
C
T
C
C
A
T
G
T
T
G
G
A
T
A
G
G
C
T
G
G
T
C
T
C
A
A
A
C
T
G
A
C
C
T
C
A
G
G
T
G
A
T
C
T
G
C
C
T
G
3900
C
C
T
T
G
G
C
T
T
C
C
C
A
A
A
G
T
G
C
T
G
G
G
A
T
A
A
C
A
G
G
T
G
T
G
A
G
C
C
A
C
T
G
T
G
C
C
C
A
G
3950
C
C
CATGTCTT CTTTTTTATT ATTTTGTTGA CTTGCTATTT TAACTTCTGC
4000
TAATCATATG AGGCCCTATG GCAATATTTG GCTGACTCAG CAGAACTACT
4050
TTCAAGTCAC AAAAATATTT TGAGCCTCTA TAAAA
T
GTAA AATGTTATTT
4100 |
var(4086):[:0.40]
TATCC
A
GTAA AAATTAGGAA TTTCACAAAA AGAAAGTTAA AAGGGACAGC
4150 |
var(4106):[G:0.03]
ATGGGAATTA AGGAAGAGGC CTGGGTAAGG ATTACATGGA TACAAATTAG
4200
AATTTTAGAT GTAATTGCAA AAGAAAAAAA AAGTCAACCC CCAAAATGGG
4250
CATCCATCTA TTCAAGTAA
T
T
T
T
T
T
T
T
T
T
C
T
T
T
T
T
T
T
T
T
C
T
T
T
T
G
A
G
A
C
A
4300 |
REPEAT
|
NOT SCANNED
G
A
G
T
C
T
C
T
T
T
G
T
C
A
T
G
C
A
G
G
C
T
G
G
A
G
T
G
C
A
G
T
G
G
T
G
C
A
A
T
C
T
C
A
G
C
T
C
A
C
4350
T
G
C
A
A
C
C
T
C
C
A
C
C
T
C
T
C
C
A
G
T
T
C
A
A
G
C
G
A
T
T
C
T
C
G
T
G
C
C
T
C
A
G
C
C
T
C
C
C
A
4400
A
G
T
A
G
C
T
G
G
G
A
T
T
A
C
A
A
G
T
G
T
G
A
G
C
T
A
C
C
A
C
A
C
C
C
A
G
C
T
A
A
T
T
T
T
T
G
T
A
T
4450
T
T
T
T
G
G
T
A
G
A
G
A
T
G
G
G
A
T
T
T
T
G
C
C
A
T
G
T
T
A
G
C
C
A
G
G
C
T
G
G
T
C
T
T
G
A
A
C
T
C
4500
C
T
A
G
C
C
C
C
A
A
G
C
G
A
T
C
T
T
C
T
C
C
C
C
T
C
G
G
C
C
C
C
C
C
A
A
A
G
T
G
C
T
G
C
G
A
T
T
A
C
4550 |
var(4544):[T:0.09]
A
G
G
C
A
T
G
A
G
C
C
A
C
T
G
C
G
C
C
C
A
G
C
C
TTTCCA CATAATCTTT AACCTTGGTG
4600
TCTCATAAGG CATTATGTTA AATTATGTGA AATGAGCATT TATGAATAAG
4650
A
C
TCCTTTTT ACCATCATAA AGTTTAAATC CAGAATAATA GATTAGACAG
4700 |
var(4652):[G:0.05]
CCATTATAAT TATTGTACAA GATAAAATGT GTCATTGCAT ATAGAATATG
4750
AAAAAAAGGT TCAAACATGC GCACACACAC AAATTAAGAA G
C
TGAAGACT
4800 |
var(4792):[G:0.05]
TG
G
TGAAGGG CATAATTCCA GAT
A
GAAGTA AACAGCATTA GCCATGGAAC
4850 |
var(4803):[A:0.02]
|
var(4824):[C:0.03]
GGAAAATGGC ATTAAGTTGG AATAGTGAAT TGTTCAGGAA AGCTATAAAG
4900
CAGGGTACAT TTACGAGCAT GTTCACAGTT AGGGGAAGGT AATATCACAG
4950
AGGCCAAGAG AAGAGAGTGT TAAGAAGTCA GTGTATCTAA TGACACATAT
5000
TGTGGAAGGT GACTGAGAAA CAAACGTTTG GATTTGGTTT TTAGAAGTAA
5050
TTTTAGCAGA ATTATGGAAG CAGAAGATAC ATTACAAAGA ATTAAGAAGT
5100
TGGTGGCC
G
G
C
C
G
G
G
C
C
T
G
G
T
G
G
C
T
C
A
C
A
T
C
T
G
T
A
A
T
C
C
C
G
G
G
A
C
T
T
T
G
G
5150 |
REPEAT
G
A
G
G
C
C
G
A
G
G
C
G
G
G
C
G
G
A
T
C
A
C
C
A
G
G
T
C
A
G
G
A
A
A
T
C
A
A
G
A
T
C
A
T
C
C
T
G
G
C
5200 |
var(5153):[T:0.01]
|
var(5157):[A:0.01]
|
var(5161):[A:0.01]
|
var(5191):[C:0.03]
T
A
A
C
A
T
G
G
T
G
A
A
A
C
C
C
C
G
T
C
T
C
T
A
C
T
A
A
A
A
A
T
A
C
A
A
A
A
A
T
T
A
G
C
C
G
G
G
C
G
5250 |
var(5206):[C:0.01]
T
G
G
T
G
G
T
A
C
A
C
G
C
C
T
G
T
A
A
T
C
C
C
A
G
C
T
C
C
T
C
G
G
G
A
G
G
C
T
G
A
G
G
C
A
G
A
A
G
A
5300 |
var(5258):[G:0.02]
A
T
T
G
C
T
T
A
A
A
C
C
C
G
G
G
A
T
G
C
G
G
A
G
G
C
T
G
T
A
G
T
G
A
G
C
C
G
A
G
A
T
C
G
C
A
C
C
A
T
5350 |
var(5337):[G:0.02]
T
G
C
A
C
T
C
C
A
G
C
C
T
G
G
G
A
G
A
C
A
G
A
G
C
G
A
G
A
C
T
C
C
A
T
C
A
C
A
A
A
A
A
A
A
A
A
A
A
A
5400
A
A
A
A
A
A
A
A
A
A
A
A
A
A
G
G
G
C
C
G
G
G
C
G
C
G
G
T
G
G
C
T
C
A
C
G
C
C
T
G
T
A
A
T
C
C
C
A
A
C
5450 |
REPEAT
A
C
T
T
T
G
G
G
A
G
G
C
C
G
A
G
G
C
G
G
G
C
G
G
A
T
C
G
C
C
T
G
A
G
G
T
C
G
G
G
A
G
A
T
C
A
A
C
A
T
5500
C
A
T
C
C
T
G
G
C
C
A
A
C
A
T
G
G
A
G
A
A
A
C
C
C
C
G
T
T
C
T
C
T
A
C
T
A
A
A
A
A
T
A
C
A
A
A
A
A
A
5550
A
A
A
T
T
A
G
C
C
G
G
G
C
A
T
G
G
T
G
G
C
G
C
A
T
G
C
C
T
G
T
A
A
T
C
C
C
A
G
C
T
A
C
T
G
G
G
A
G
G
5600
C
T
G
A
G
G
C
A
G
G
A
G
A
A
T
C
A
C
T
T
G
A
A
C
C
C
G
G
G
A
G
G
A
G
G
A
G
G
T
T
G
C
A
G
T
G
A
G
C
C
5650
A
A
G
A
T
C
G
C
G
C
C
A
C
T
G
C
A
C
T
C
C
A
G
C
G
T
G
G
G
C
A
A
C
A
A
G
A
G
C
G
A
A
A
C
T
C
C
A
T
C
5700
T
C
A
A
G
A
A
A
A
A
A
G
A
A
A
A
A
A
A
G
A
A
G
A
A
GTTAG TGTTCAGAAC AGTAGGCGTA
5750
GGCCCCAAAA CAAAGCAGTA TCCTTGAAAA AGAGAAATTA TGCTAAATTA
5800
AGAGACTTAA GAAGAAAGTG CGATCTGAAG TAGATATTGT CGT
G
GACAAG
5850 |
var(5844):[C:0.01]
CCAGCTATAA AAGATGTCTT AGGGACAGTT GAAAAATAAT CATATAAAAG
5900
GGG
G
G
G
C
A
T
G
G
T
G
G
T
T
C
G
T
G
C
C
T
G
T
A
A
T
C
T
C
A
G
C
A
C
T
T
C
G
G
G
A
G
G
C
C
G
A
G
5950 |
REPEAT
G
A
A
G
A
A
T
C
A
G
T
A
G
A
G
C
C
C
A
G
G
A
G
T
T
G
G
A
G
A
C
C
A
G
C
C
T
G
A
G
C
A
A
C
A
T
A
G
C
A
6000 |
NOT SCANNED
A
G
A
C
C
C
C
A
T
C
T
T
T
A