C3 Color FASTA
The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.
*Display courtesy of
GeneSNPs
T
C
A
T
T
G
C
A
A
C
G
A
C
A
A
C
T
C
T
A
T
G
A
A
G
C
A
G
G
T
G
G
T
A
A
G
G
G
T
T
T
C
C
T
T
T
T
C
C
A
50 |
NOT SCANNED
|
REPEAT
T
G
A
A
C
A
A
A
C
T
G
A
G
G
C
T
C
A
G
G
G
C
G
G
T
A
A
T
C
A
G
T
A
G
C
T
T
A
C
C
C
A
A
A
G
A
T
C
A
C
100
A
G
C
T
A
G
T
T
T
C
A
G
A
G
C
T
A
G
A
A
A
A
T
A
A
C
G
C
A
G
G
T
T
C
A
A
G
C
T
T
A
T
T
C
A
C
T
G
C
A
150 |
REPEAT
G
A
G
A
G
C
C
T
G
G
T
G
T
G
A
A
G
C
C
A
C
A
G
A
T
G
T
C
A
G
T
C
T
C
T
C
C
A
T
C
A
A
G
A
A
G
A
G
G
C
200
T
G
G
T
G
G
C
T
G
G
A
C
A
C
A
G
C
G
G
C
T
C
A
C
G
C
C
T
G
T
A
A
T
T
C
C
A
A
C
A
C
T
T
T
G
G
G
A
G
G
250 |
REPEAT
C
C
A
A
G
G
T
A
G
G
T
G
G
G
T
C
A
C
T
T
G
A
A
G
T
C
A
G
G
A
G
T
T
C
A
A
G
A
C
C
A
G
C
C
T
G
G
C
C
A
300
A
C
A
T
G
G
T
G
A
A
A
C
C
C
C
T
T
G
T
C
C
A
C
T
A
A
A
A
A
T
A
C
A
A
A
A
A
T
T
G
C
C
A
G
A
C
G
T
G
G
350
T
G
G
T
G
C
T
C
A
C
C
T
A
T
A
A
T
T
T
C
A
G
C
C
A
T
T
C
C
G
G
A
G
G
C
T
G
A
G
G
C
A
G
G
A
G
A
A
T
T
400
G
T
T
T
G
A
A
C
C
C
A
G
G
A
G
G
T
G
G
A
G
G
G
T
G
C
A
G
T
G
A
G
C
T
G
A
G
A
T
A
G
C
G
C
C
A
C
T
G
C
450
C
C
T
C
C
A
G
C
C
T
G
G
G
T
G
A
C
A
G
G
G
C
A
A
G
A
C
T
C
T
A
A
A
A
A
A
A
A
A
A
C
A
C
T
C
A
A
A
C
A
500
A
A
C
A
A
A
A
T
A
T
C
C
C
C
C
A
A
A
A
A
G
T
A
G
G
A
G
G
C
T
G
G
T
T
A
C
T
T
T
C
T
C
A
C
A
A
T
A
T
A
550 |
REPEAT
A
C
A
A
G
A
G
G
C
C
T
G
T
A
A
C
C
T
G
T
A
A
G
A
A
T
G
A
G
G
C
A
G
T
T
C
T
T
T
G
C
T
C
A
C
T
G
A
G
G
600
T
G
A
A
A
T
A
G
C
C
T
C
T
G
A
G
G
T
A
T
A
T
T
G
T
T
C
A
T
G
A
A
A
A
A
A
C
G
A
A
A
C
A
A
A
A
C
G
A
A
650
A
C
C
C
A
A
G
A
T
T
T
A
A
C
T
G
A
A
G
A
G
A
C
C
A
G
G
A
A
G
A
A
T
A
G
T
A
T
G
T
G
C
T
A
T
G
T
G
C
T
700
G
T
C
C
A
C
A
G
G
G
C
A
C
A
G
T
A
G
T
T
C
A
C
A
C
C
A
G
C
A
C
T
T
T
G
T
G
A
G
G
C
T
G
C
T
G
C
G
G
G
750 |
REPEAT
A
G
G
A
T
C
A
C
T
T
G
A
G
C
C
C
A
G
G
A
G
T
T
C
A
A
G
A
C
T
G
G
A
C
T
G
G
G
C
A
A
C
A
T
C
G
T
G
G
G
800
A
C
C
C
C
C
A
T
C
T
C
C
A
C
A
A
A
A
A
T
A
A
A
A
A
A
A
T
T
A
T
C
C
G
G
G
C
A
T
G
G
T
G
G
C
G
G
C
C
A
850 |
var(834):[A:0.02]
|
var(836):[A:0.02]
C
C
C
G
T
A
G
T
C
C
C
G
G
C
T
A
C
T
T
G
G
G
T
G
G
T
T
G
A
G
C
C
A
G
G
A
T
G
A
T
C
A
C
T
T
G
A
C
C
C
900
C
A
G
G
A
G
G
T
T
G
A
G
G
C
T
G
C
A
G
T
G
A
G
C
T
G
T
G
A
T
T
G
C
A
C
C
A
C
T
G
C
A
A
T
T
T
A
G
C
C
950
T
G
A
G
T
G
A
C
A
G
A
A
T
G
A
A
A
A
A
A
A
A
A
T
T
T
T
T
T
T
A
A
A
G
G
A
A
A
A
C
A
C
A
A
A
A
A
G
A
A
1000 |
var(963):[G:0.29]
TATGCTGTCA ACA
G
GGATGG GAGGAAGACC ACCTTTACTG CTATACACAT
1050 |
var(1014):[A:0.05]
TTGTACCTTT TAGATGTTGA TCAATATGAA TATATTATAC ACACAGACAC
1100
ACACACAGAC ACACACACAC ACACAAACAA TACAATTTAA TATCCTAAGA
1150
GGATATTGAC ATTAGACAGG TACAAAAGCT CTAGAAATGA GGACTTTCCT
1200
CAGTGATGAC TTTTTTCACC ACCAAAGTCA CTCAGGCATC CTGACAAGGG
1250
TAAGTGAGGG GAGCCTCCTT GGAAAATAAA CTCACTTGGA
T
A
G
T
G
A
A
C
T
C
1300 |
REPEAT
C
T
G
C
A
C
A
T
A
C
C
T
C
A
A
A
G
C
C
C
A
T
C
T
G
A
A
A
T
G
T
C
C
C
C
T
C
C
T
A
C
A
G
G
A
A
G
T
T
T
1350
T
C
C
C
T
G
A
C
C
C
T
C
C
A
A
G
AAGC AGAGTTCTAT TTCACTGGGG AAAACATTTC
1400
TTCTTCTTCT TTTTTTTCCC TGCCCTGCAC ATGAGCTAGA AAACATTTCA
1450
TGAAACTGGG AGTTTCTGTG CTGGGCTCTG TCCCTCCCCC ATTCTACTTC
1500
CCCTCCCTCA GCATGGAAGC CTCTGGAAGT GGGGCTCTGA CTCCCAGCCT
1550
ACAGAGAGAT TCCTAGGAAG TGTTCGACTG ATAAACGCAT GGCCAAAAGT
1600
GAACTGGGGA TGAGGTCCAA GACATCTGCG GTGGGGGGTT CTCCAGACCT
1650
TAGTGTTCTT CCACTACAAA GTGGGTCCAA CAGAGAAAGG TCTGTGTTCA
1700
CCAGGTGGCC CTGACCCTGG GAGAGTCCAG GGCAGGGTGC AGCTGCATTC
1750
ATGCTGCTGG GGAACATGCC CTCAGGTTAC TCACCCCATG GACATGTTGG
1800
CCCCAGGGAC TGAAAAGCTT AGGAAATGGT ATTGAGAAAT CTGGGGCAGC
1850
CCCAAAAGGG GAGAGGCCAT GGGGAGAAGG GG
G
GGCTGAG TGGGGGAAAG
1900 |
var(1883):[A:0.01]
GCAGGAGCCA GATAAAAAGC CAGCTCCAGC AGGCGCTGCT CA
C
T
C
C
T
C
C
C
1950 | Exon 1 |
UTR
C
A
T
C
C
T
C
T
C
C
C
T
C
T
G
T
C
C
C
T
C
T
G
T
C
C
C
T
C
T
G
A
C
C
C
T
G
C
A
C
T
G
T
C
C
C
A
G
C
A
2000 |
var(1975):[G:0.02]
C
C
A
T
G
G
G
A
C
C
C
A
C
C
T
C
A
G
G
T
C
C
C
A
G
C
C
T
G
C
T
G
C
T
C
C
T
G
C
T
A
C
T
A
A
C
C
C
A
C
2050
M G P T S G P S L L L L L L T H 16
C
T
C
C
C
C
C
T
G
G
C
T
C
T
G
G
G
G
A
G
T
C
C
C
A
T
GTGA GTGGTTATGA CTCTACCCAC
2100
L P L A L G S P M 25
AAACAGGGCT GGTTCTGGGG TGGAAGCAGA CATTTGGGGG TCCAGGTCCC
2150
TGTAGAATTC AGGGTGCATT TGGGTGTTTG TGGATTCAG
G
GGTTAGCAGG
2200 |
var(2190):[T:0.09]
TTGGGAATGA TTATATATAT TTGGGCTGCC TGTGAGTTTG GGTGTTTGTG
2250
GTTGGGTGTT TGTGGAATCC AGGTATC
A
TG GAATTGGAGT TTATATACAT
2300 |
var(2278):[G:0.01]
T
T
GGGCTGCC TG
T
GAGTTTG GGTGTTTGTG GTTGGGTGTT TGTGGAATCC
2350 |
var(2302):[C:0.02]
|
var(2313):[A:0.01]
AGGTATCGTG GAATTGGAGT TTATATACAT TTGGGCTGCC TGAGAGTTTG
2400
GGTGTTTATG GGTTGGGTGT T
T
GTGGAATC CAGGTATGGT GGAATTGGAG
2450 |
var(2422):[C:0.01]
TTTGGGATGT TTCTAGAATT GAGGTCATCT GTTGGTTTAG GGTGTATGTG
2500
GTGTTCATTG ATGGTGCGGT TGGGG
T
G
A
TT TGGAGACTCG GAGGTTTGGA
2550 |
var(2526):[G:0.36]
|
var(2527):[T:0.36]
|
var(2528):[G:0.36]
CTTTACAAGA TTTGGGAGTT TGCAGCTTGG GGACTTGCAA TTTTCAGT
G
T
2600 |
var(2599):[C:0.01]
GGGTTTAAAG ATTGGCTACT TCGGGTTCAT GTATAGTTGG GGCATTTGGA
2650
ATTGATTGTA TTTATTAGGA CTGGGGTGTT GGAGGTTTAG GCTGGGTTTG
2700
GGGTGCTCTA AGATTTGAGG TTTAGAGGTT TTGGCGTATG TGGGTTTGGG
2750
TAGGTAGAGT TGAGGGTGTC CGGGAGTTTG AGTGTTTACA TATTTGGAGT
2800
GTTTAGAGAG GTAGAGGTTT AGGGTTTGGG GCATGTGTGG GTTTAGGCGA
2850
TTGTGGGTCT GGAAGTCCAG AGACTTGGAG GAGTTGCTGA CGCTGGTTGG
2900
AAGGTTCAGG GTTTGGTGGG ATGTGTGGCC CC
C
TCG
T
TGC CCAG
G
CTTTC
2950 |
var(2933):[:0.28]
|
var(2937):[C:0.27]
|
var(2945):[C:0.06]
AAAGGCCAGG CCCAGCTGGC TGAGA
G
TGGG AGTCATGGTG GCTGCTGTCC
3000 |
var(2976):[A:0.09]
TGCCCATGTG GTTGAGACGG TGGCAGTGCC CAGAGAAGAT AATGGCATTG
3050
GCAAGTGCGC CGGCAGTCAC TGGATCCTCT CCAGGACCAG AGGCTGGGGC
3100
ACACAGCCTG CCAGGCGCTG ACTCCAGTGA GGACTGGCGT CTCACATCCG
3150
TGGAATGACA AGCCCACTCC CGTGCCCCAC TCCGACAG
G
T
A
C
T
C
T
A
T
C
A
T
3200 | Exon 2
Y S I I 29
C
A
C
C
C
C
C
A
A
C
A
T
C
T
T
G
C
G
G
C
T
G
G
A
G
A
G
C
G
A
G
G
A
G
A
C
C
A
T
G
G
T
G
C
T
G
G
A
G
G
3250
T P N I L R L E S E E T M V L E 45
C
C
C
A
C
G
A
C
G
C
G
C
A
A
G
G
G
G
A
T
G
T
T
C
C
A
G
T
C
A
C
T
G
T
T
A
C
T
G
T
C
C
A
C
G
A
C
T
T
C
3300
A H D A Q G D V P V T V T V H D F 62
C
C
A
G
G
C
A
A
A
A
A
A
C
T
A
G
T
G
C
T
G
T
C
C
A
G
T
G
A
G
A
A
G
A
C
T
G
T
G
C
T
G
A
C
C
C
C
T
G
C
3350
P G K K L V L S S E K T V L T P A 79
C
A
C
C
A
A
C
C
A
C
A
T
G
G
G
C
A
A
C
G
T
C
A
C
C
T
T
C
A
C
G
GTGAGTGCA GACTGGCGCA
3400
T N H M G N V T F T 89
GGACCCGGCT GA
C
ACCCACA GCCACGCCCA CTCCCCCCCT CCTCCTGAGC
3450 |
var(3413):[T:0.01]
CCCTCCCCTT CTGTCTTCTC CCTTTCTAAG CCCTGCCCTT CCCTGAGACT
3500
CCACCCCTTC GGAGTCGCCT CTCCTTCTAA GCCCCTCCCT TCTCTGAGAC
3550
TCCACCCCTT CTGAGTCTCC TCCCCTTATA AGCCCCTCCC TTTTCTGAGA
3600
CCCCCCCCCC ACCCCTTCTG AATCTCCTCC CCTTCTAAGC CCTGA
C
C
T
T
C
3650 |
var(3646):[:0.86]
C
C
T
G
A
G
A
C
C
C
C
A
C
C
C
C
T
T
C
T
G
A
G
A
C
T
C
C
T
C
C
C
C
T
T
C
T
G
A
G
T
C
C
C
T
C
CCTT
3700
CCCTGAGACC CCACCCCTTC TGAGAC
T
CCT CCCCTTCT
G
A GTCCCTCCCT
3750 |
var(3727):[C:0.13]
|
var(3739):[A:0.09]
TCCCTGAGAC CCCACCCCTT CTGAGGTTCC TCCCCTTCTC TGAGACTCCA
3800
CCCCTTCTGA GTCTCCTCCC CCTCTAAGTC CCTCCCACTG AATTCCTTTT
3850
CCAAGCCCCT CCCCCTCGAA GTCTCCTCTT CTGAACTCCT CCCCTCTTAG
3900
TCTCCATCAC TTTCTAAGTT CCCTCACCTG AGTCCCTCCC CCTTTCTGAG
3950
CCCCTCCCAT GTCAGCCCCT TCCCTTTCTG AGTCCCCGCC CCTTCTGAGC
4000
CCCTCCTCCT ATAAGCTCTC TCCTCCTTGT GAGCTCTTCT TTTTGAGTTC
4050
CCTCCCTGGT CCCCCCTCTC CCCTCGCACC TCCTTCACAT GCCCCTCCCT
4100
CCCCAAAACG GCCACCTCGG
A
AGACCAAGA ATAATGGGCA GGCAAGGAGG
4150 |
var(4121):[G:0.24]
GACCCAGCCC AAGATCCGGA AGCTGGACCG TGGGCATGGG GCCTTGGAAC
4200
AGACCCCTGA CAATGCCCTG CCCACGCCTA G
A
T
C
C
C
A
G
C
C
A
A
C
A
G
G
G
A
G
T
4250 | Exon 3
I P A N R E 95
T
C
A
A
G
T
C
A
G
A
A
A
A
G
G
G
G
C
G
C
A
A
C
A
A
G
T
T
C
G
T
G
A
C
C
G
T
G
C
A
G
G
C
C
A
C
C
T
T
C
4300 |
var(4268):[G:0.13]
F K S E K G R N K F V T V Q A T F 112
G
G
G
A
C
C
C
A
A
G
T
G
G
T
G
G
A
G
A
A
G
G
T
G
G
T
G
C
T
G
G
T
C
A
G
C
C
T
G
C
A
G
A
G
C
G
G
G
T
A
4350
G T Q V V E K V V L V S L Q S G Y 129
C
C
T
C
T
T
C
A
T
C
C
A
G
A
C
A
G
A
C
A
A
G
A
C
C
A
T
C
T
A
C
A
C
C
C
C
T
G
G
C
T
C
C
A
C
A
G
GTG
4400
L F I Q T D K T I Y T P G S T 144
AGGCTGGGGG CGGCTGGAGA GGGCGGGGCA CCGGCGTGGG CGGGCTAGGG
4450
TC
T
CACGAGG CCTCTTTGTC TCTCCCCAG
T
T
C
T
C
T
A
T
C
G
G
A
T
C
T
T
C
A
C
C
G
4500 |
var(4453):[C:0.02]
| Exon 4
V L Y R I F T 151
T
C
A
A
C
C
A
C
A
A
G
C
T
G
C
T
A
C
C
C
G
T
G
G
G
C
C
G
G
A
C
G
G
T
C
A
T
G
G
T
C
A
A
C
A
T
T
G
A
G
4550
V N H K L L P V G R T V M V N I E 168
GTGCCAGCCA GAGGGGGCCC CAGGGG
A
AGC AGGGGCACAG GCTTAGGAGA
4600 |
var(4577):[C:0.12]
GGCAAAGAGA TC
G
AGAGAGA CAGAGAAAGA CACACCGGAA GGGGTGCAGT
4650 |
var(4613):[A:0.15]
GGCAGAGACA CAGAGGCAAA GAGATATGCA GACACACACC CACACAACAC
4700
ACACACATAC AGCACACAAC
G
TGCACACAC ACAGCACACA ATACACACAC
4750 |
var(4721):[A:0.07]
AGAGGCAAAG AGATATGCAG ACACATGTGC ACACACAATG CACACACACA
4800
ATGCAACACA CACAAACACA CAACATACAC GACCACACAA CACACACAAC
4850
ACAACACACA ACACAATACA CACAGCACAA CGTGCATGAC CACACCACAC
4900
ACAACACACA ACACACACAA CACAATACAC AACATACACA ACCACGCAAT
4950
ACACACAAAA CACACACAAC ACAACACAAC ATACATAACC ACACCACACA
5000
CAACACACAA CCACACAACA CTATCACACA ACACACACAA ACACACACAA
5050
CACACAACAC ACACAACACA CACAAAACAC AACACACACA CAACATACAC
5100
AACCACACAA CACACAACCA CACAACATAC ACGACCACAC AACACAGTGC
5150
ACACAAACAT AGCACACACA ACACACAACC CAACACACAA CCACACAATA
5200
CACCATATGG CGCGCACACA CACACACACA CACACACAGG CTGAGAGACA
5250
AGGTGGAGAT CCAGGGAGAC CCCAGGGAGC AGTGCAGGTG TCCGTGGATT
5300
CTGCTTTCAG TTAAACCCCT GA
T
C
A
C
T
T
C
A
C
C
T
C
C
C
T
G
A
G
C
C
T
C
A
G
T
T
A
C
5350 |
REPEAT
C
T
T
A
T
C
T
G
A
A
T
A
T
C
G
G
G
A
T
C
A
T
G
A
CGGATA ATTGTATGTC A
T
C
T
A
T
T
C
T
A
5400 |
REPEAT
C
C
G
A
C
G
G
C
A
G
C
C
A
G
A
G
G
A
C
G
C
C
T
G
T
G
A
G
C
A
C
C
T
G
A
G
T
C
A
G
G
G
C
C
C
A
T
C
C
C
5450
T
G
C
T
C
T
G
C
C
T
A
C
A
G
C
C
C
T
C
C
A
T
G
G
C
T
C
C
C
A
C
C
T
T
C
C
T
A
T
G
C
G
T
C
A
A
A
G
C
C
5500
C
A
A
G
T
C
C
T
C
C
C
T
G
C
A
G
T
C
C
A
C
A
A
G
G
C
C
C
T
G
C
A
C
A
C
C
T
T
G
C
C
C
T
G
T
C
C
C
T
T
5550
C
C
C
T
G
C
C
C
T
C
C
C
C
T
C
C
T
C
C
C
T
C
T
C
T
C
C
C
C
C
T
C
G
T
T
C
A
C
T
C
T
T
C
T
G
G
A
G
C
C
5600
A
C
A
C
G
G
G
C
C
A
T
C
C
T
C
C
C
T
G
T
T
C
C
T
C
C
A
A
C
A
C
C
C
A
G
G
T
G
C
A
G
T
C
C
T
G
C
C
T
T
5650
G
G
C
G
C
C
T
T
G
G
C
A
C
G
G
G
C
T
G
T
G
C
C
C
T
C
T
T
C
T
C
A
A
G
A
A
A
A
C
C
C
T
C
T
T
C
T
T
C
C
5700
A
A
A
T
A
T
C
C
A
C
A
C
A
G
C
T
T
G
T
T
C
T
C
T
C
T
C
C
T
C
C
T
T
T
A
A
G
T
C
T
T
T
G
C
T
C
A
A
A
T
5750
G
T
C
A
C
C
A
A
T
G
T
C
T
C
A
A
T
T
T
T
A
C
A
A
T
G
A
G
G
T
C
T
C
T
C
T
G
A
G
T
A
A
C
C
T
A
T
A
A
A
5800
G
T
C
G
C
A
A
A
T
A
C
C
C
A
C
C
C
T
G
A
G
C
G
T
C
C
C
C
C
C
T
C
C
C
C
G
C
T
A
C
A
C
A
C
A
C
T
C
C
T
5850 |
var(5815):[:0.06]
C
C
T
T
C
C
T
G
C
C
A
T
G
T
C
C
T
G
C
A
A
A
T
G
A
G
A
T
T
T
A
T
T
C
A
T
T
T
G
A
T
A
A
T
T
G
C
T
T
C
5900
T
C
C
C
A
T
C
G
C
C
T
C
G
C
C
C
T
C
T
A
T
T
G
A
A
C
C
T
A
A
A
T
C
C
C
T
C
C
A
G
G
A
A
G
G
A
A
T
T
G
5950
T
T
A
T
G
T
T
T
G
T
T
G
A
G
G
G
T
T
T
T
G
T
C
A
C
C
T
G
A
A
C
T
C
A
G
C
A
C
A
A
T
G
C
T
G
G
T
A
T
A
6000
T
A
G
T
T
G
G
G
T
T
T
A
A
T
A
A
A
A
A
A
C
T
T
A
C
T
G
G
A
A
G
A
A
GCGAGAA GGATGGGAGG
6050
AGAGAAGGGG AAGGAGGGTG TTCTCATAGA ATTATCATGA GGATGTGTTG
6100
AAATCATACA A
G
G
C
T
A
G
G
T
G
C
A
G
T
G
G
C
T
C
A
C
A
C
T
T
G
T
A
A
T
C
C
C
A
G
C
T
G
T
T
6150 |
REPEAT
T
G
G
G
A
G
G
C
C
A
A
G
G
C
G
G
G
A