C2 Color FASTA
The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.
*Display courtesy of
GeneSNPs
TGTGATTGAA AGAAGACAAG GCTACAGTAT TTGTGAACAT CCTTAAATAC
50
CCCCCACCTT TACGAT
A
G
T
T
T
A
T
T
T
C
T
C
T
C
T
T
G
T
A
A
C
A
A
T
C
T
A
A
G
T
G
G
C
T
100 |
REPEAT
G
T
G
C
A
G
G
G
C
T
G
G
T
A
T
G
A
C
A
T
C
A
A
C
A
C
T
G
T
G
T
C
A
G
A
C
A
C
C
C
A
G
G
C
T
C
C
T
C
T
150
G
T
C
T
G
T
T
T
G
C
T
C
T
G
T
C
A
T
C
C
C
C
A
G
C
A
T
G
T
T
G
C
C
C
T
C
A
T
C
C
T
C
C
T
G
G
T
G
G
A
200
A
G
A
C
G
G
A
T
C
T
C
C
G
C
T
A
G
G
T
T
T
A
T
A
T
T
C
C
A
G
C
C
C
A
T
G
A
A
A
A
G
A
A
A
A
G
G
C
A
C
250
A
C
T
G
C
C
T
T
T
T
T
A
T
T
T
T
A
G
G
G
A
C
A
T
A
A
C
T
T
G
G
A
A
A
T
G
A
C
A
T
A
C
A
T
A
A
G
T
T
C
300
T
A
C
T
A
A
C
A
T
C
C
C
A
T
T
A
G
C
C
A
G
A
A
C
C
A
A
G
T
C
A
C
C
T
G
G
C
T
A
C
C
T
A
G
C
T
G
C
A
A
350
G
G
G
A
A
G
C
T
A
G
G
A
A
A
T
A
T
G
G
T
C
T
T
T
A
G
C
T
G
G
G
T
G
A
C
T
G
T
G
T
G
T
T
C
C
C
C
T
A
A
400 |
var(389):[A:0.46]
C
C
A
T
C
T
C
T
T
A
C
T
G
T
G
G
A
A
G
G
A
G
G
G
A
G
A
A
A
A
G
A
T
A
C
T
T
G
A
G
G
G
G
C
A
G
G
G
G
A
450
G
G
C
A
C
T
A
G
C
A
G
C
T
C
T
G
C
C
A
C
A
GCAGCCACT TTGGAGTCCC TAACACCAGG
500
ATGTCCTGAT TTTCATGCAC TTAGCCCTGT CCAAGGGGAG TCTCAATTTG
550
TGTAC
T
C
T
T
T
T
T
T
T
T
T
T
T
T
T
T
G
A
G
A
C
A
G
A
G
T
C
T
T
G
C
T
C
T
T
G
T
C
A
C
C
C
A
G
G
600 |
REPEAT
C
T
G
G
A
A
T
G
C
A
G
T
G
G
C
A
T
G
A
T
C
T
T
G
G
C
T
C
A
C
T
G
C
A
A
C
C
T
C
T
G
C
C
T
C
C
C
G
G
G
650
T
T
C
A
A
G
T
G
A
T
T
C
T
C
C
T
G
C
C
T
C
A
G
C
C
T
C
C
C
G
A
G
T
A
G
C
T
G
G
G
A
T
T
A
C
A
G
G
C
C
700
C
C
T
G
C
C
A
C
C
A
C
A
C
C
C
G
G
C
T
A
A
T
T
T
T
T
T
G
T
A
A
T
T
T
T
A
G
T
A
G
A
G
A
C
G
G
G
G
T
T
750 |
var(744):[T:0.01]
T
C
A
C
C
A
T
G
T
T
G
G
C
C
G
G
G
C
T
G
G
T
C
T
C
A
A
A
T
T
C
C
T
G
A
C
C
T
C
A
T
G
A
T
C
C
A
C
C
C
800 |
var(800):[T:0.13]
G
C
C
T
C
A
G
C
C
T
C
C
C
A
A
A
A
T
G
C
T
G
G
G
A
T
T
A
C
A
G
G
C
G
T
G
A
G
T
C
A
C
T
G
T
G
C
C
C
G
850
G
T
C
T
T
A
T
T
T
T
T
T
T
T
T
T
T
T
C
T
T
T
T
T
G
A
G
A
T
G
T
A
G
T
C
T
T
A
C
T
C
T
G
T
T
G
C
C
C
A
900 |
REPEAT
G
G
C
T
G
G
A
G
T
G
C
A
G
T
G
G
C
A
C
A
A
T
C
T
T
G
G
C
T
C
A
C
T
G
C
A
A
C
C
T
C
C
A
T
C
T
T
C
T
A
950
G
G
T
T
C
A
A
T
C
A
G
T
T
C
T
C
T
AAG GACTCACTTA TAAATCAAAA GGGTTTTTAC
1000
GAACCTAAAT GATCACTTCA GAGAGGTTTC ATGTTCATTT TTTTATTGGT
1050
CTTATTTATT TTTACCCTAC
A
TTGTTCAAA AAGGTATTGA AAAGACTTCT
1100 |
var(1071):[G:0.27]
GTGGGTCAGG GAGACTAACA CACTAGCTTC AAGTTTCTTT GCTTCCTGCA
1150
TTTCATACAA GTGTAGGTTA TGATTTAAAG GCATATCCCA GCCCCCGCAA
1200
AAGTTTTATT CCTTTGAGTA ACCAACCCCA AATGTATTTA CTTTGCCAGT
1250
TGGGAATTTC AT
C
TACTAGA CTTTCCGTAA AAATGTTGTA AACATTTTTC
1300 |
var(1263):[G:0.01]
CTGTCTCCAA AACTAAGTGT TGATTTCATT TTTTCCACCT AGATTATCTC
1350
TAGGGAAGGA TTGTAGGGAA TAAAAAAGTA TTGTCAATCT TCCTATTTAT
1400
CAAGAAGTTC TAAAAAAATT AGTTTCACCC CCCTCGGAAG TTTATCTTCA
1450
AGAAGACAGA ACTGTTCTAG GCTCTCAGGA AGTAAAACCC ACTTGGTACA
1500
ACCCAAAAGA ACA
C
TAAAAC TTTACTTAAA TGAAAT
A
TTT TGCAATATCT
1550 |
var(1514):[A:0.01]
|
var(1537):[G:0.01]
TGGATGGTTT GTGGGTTTGT GTGCTTTAGA CTATTGACTA TTCACACAAG
1600
AGCAAGGTGC ATGTGTGCAC ACACGAGCCC AAATATGTGT TTGCCTGCGT
1650
GTTTGTGAGC
A
TGCGTGTAT GGTGCACATG TGCACGCATG GGTGGGTGGA
1700 |
var(1661):[T:0.01]
GCGTGGGGGC AGTACACAAA GCCTGTGGGG GAGATCTATT GACCCTATAG
1750
ATATATTAGC ATCAGGGAGA CAGGGCAAAG GTTTCACCCT TCAGTTCAGT
1800
CCCCAATCCC TGCTTATTAT TTCCCTAACA GAAGACCATC CCCCTTGCCA
1850
CTCCCTGGTT TTTCTTCTCT GGCAGCAATG AAGCAGCTGC TGACCCAGCT
1900
CTAGTTTTCG GGAAGTCAGA TGACCTTTTC CCTCCCGC
G
G
C
T
C
T
C
T
A
C
C
T
1950 | Exon 1 |
UTR
C
T
C
G
C
C
G
C
C
C
C
T
A
G
G
G
A
G
G
A
C
A
C
C
A
T
G
G
G
C
C
C
A
C
T
G
A
T
G
G
T
T
C
T
T
T
T
T
T
G
2000
M G P L M V L F C 9
C
C
T
G
C
T
G
T
T
C
C
T
G
T
A
C
C
C
A
G
GTAGGAGGCA GGGAAGGGGG AACGTCAGGG
2050
L L F L Y P 15
TCCTGTGTGT GAG
G
TTGGTG CTCCCAGCTT GAATTCCCAT GTGTGAAACA
2100 |
var(2064):[T:0.02]
GTCTCTTTTG CTTTCCTTTT CTCATCTGTG TCTTCCTTCT TTCTCCATTG
2150
CTGTCTCCTT GTTCCCACGG CTCTAG
G
T
C
T
G
G
C
A
G
A
C
T
C
G
G
C
T
C
C
C
T
C
C
T
2200 | Exon 2
G L A D S A P S 23
G
C
C
C
T
C
A
G
A
A
C
G
T
G
A
A
T
A
T
C
T
C
G
G
G
T
G
G
C
A
C
C
T
T
C
A
C
C
C
T
C
A
G
C
C
A
T
G
G
C
2250
C P Q N V N I S G G T F T L S H G 40
T
G
G
G
C
T
C
C
T
G
G
G
A
G
C
C
T
T
C
T
C
A
C
C
T
A
C
T
C
C
T
G
C
C
C
C
C
A
G
G
G
C
C
T
G
T
A
C
C
C
2300
W A P G S L L T Y S C P Q G L Y P 57
A
T
C
C
C
C
A
G
C
A
T
C
A
C
G
G
C
T
G
T
G
C
A
A
G
A
G
C
A
G
C
G
G
A
C
A
G
T
G
G
C
A
G
A
C
C
C
C
A
G
2350
S P A S R L C K S S G Q W Q T P 73
G
A
G
C
C
A
C
C
C
G
G
T
C
T
C
T
G
T
C
T
A
A
G
G
C
G
G
T
C
T
G
C
A
A
A
C
GTGA GGCTCCCTGT
2400
G A T R S L S K A V C K 85
GGGCTTTGCT CAGGGTG
C
TA CACCAGGGGC CACCCCAGAA CTTTTGTTTA
2450 |
var(2418):[G:0.28]
GGAGTTGCTC AGGGTGGGAC TTAACCTGAC TAGATGGCAA AGTTGCTTTT
2500
GCAGAGGGCT TTTCAAAATA TCCAGAAAAT GTCAATTGCC AGTAGCAAGG
2550
AATTGG
G
AAC AGGTCTTGAT GGAGACTGTG GGGTACTAAA GCCAGGGATG
2600 |
var(2557):[A:0.01]
ACTTTTTATG TACAATTGAC TGCCTAGTAG TGACCATTCA GAACAGATGC
2650
TGAATGGTCC TGGAGTCCTC TAGACATCTG AGGATCCCAA GGGGAGTGTC
2700
TGGGGAGGCC ACGGCCCTCA GGAGACTGAG GGAAGTGGCT ATTTATCAAT
2750
CAGTTCGC
T
T
A
G
A
C
T
C
T
G
T
G
A
A
A
T
T
G
G
C
A
A
T
A
T
T
C
A
A
T
C
A
G
T
T
G
C
C
A
A
A
A
2800 |
REPEAT
A
C
A
G
C
A
A
T
T
T
C
A
C
A
T
G
T
T
G
C
A
A
C
C
T
A
A
TAT TTCAGTGTTT TGACAGCCAG
2850
TTGACCATTC CCATGCATTC CAGCATAAAA TCACCTGCTT AATCCCCAGC
2900
CCAGGTGTTA TCCATCCAGT CCTATATTCC CCACCCACTT CCTCTCTCTC
2950
CAG
C
T
G
T
G
C
G
C
T
G
T
C
C
A
G
C
C
C
C
T
G
T
C
T
C
C
T
T
T
G
A
G
A
A
T
G
G
C
A
T
T
T
A
T
A
C
C
3000 | Exon 3
P V R C P A P V S F E N G I Y T 101
C
C
A
C
G
G
C
T
G
G
G
G
T
C
C
T
A
T
C
C
C
G
T
G
G
G
T
G
G
C
A
A
T
G
T
G
A
G
C
T
T
C
G
A
G
T
G
T
G
A
3050
P R L G S Y P V G G N V S F E C E 118
G
G
A
T
G
G
C
T
T
C
A
T
A
T
T
G
C
G
G
G
G
C
T
C
G
C
C
T
G
T
G
C
G
T
C
A
G
T
G
T
C
G
C
C
C
C
A
A
C
G
3100
D G F I L R G S P V R Q C R P N 134
G
C
A
T
G
T
G
G
G
A
T
G
G
A
G
A
A
A
C
A
G
C
T
G
T
G
T
G
T
G
A
T
A
A
T
G
G
G
G
G TGAGTTCTCT
3150
G M W D G E T A V C D N G 147
GGCTGATGGG CTACACAGGG GGCTGGGGTC TCCTGGGGAA CCCTGGGGCC
3200
CAATGTGCAT C
C
AGGAAGCC TCTGTGGGGA TAGGAGTCTG TTGTTCAGTG
3250 |
var(3212):[T:0.01]
TGCCATAATA ATATTCCTGG ATTTTGGTAA ATTGAGGTCT ACAGGTCACA
3300
CATCACAAGT CTGCAAGGGC CAGGCCCCAG GCAGCTGGTG CTAAGCTTCA
3350
GATGTAGCAT AAAGCCTCCA CACACTCTGC CTGGCTTTTC TAAGTGCCTC
3400
AAAGCAAGAC TTCATATTCA GGCCCCACAG ATTGTTGTAG GGAAGATATG
3450
CTGGGAGAG
A
G
T
C
A
A
G
T
A
C
T
G
T
G
C
T
T
T
A
A
T
G
C
C
T
T
G
C
C
T
T
T
A
A
A
G
C
C
A
G
G
3500 |
REPEAT
T
T
T
G
G
G
T
T
C
C
A
A
G
C
C
C
T
A
C
T
C
T
G
A
C
T
T
T
G
A
C
A
G
A
C
T
T
T
G
G
G
A
A
G
G
C
T
A
T
T
3550
T
A
A
C
C
T
T
T
C
T
A
G
C
C
C
T
C
A
G
T
T
T
T
C
C
C
A
T
C
T
G
T
A
A
G
A
C
A
A
G
G
A
T
A
G
T
G
A
G
T
3600
G
C
T
G
A
C
C
T
G
A
G
A
T
T
G
C
C
A
T
C
T
G
G
A
T
T
A
A
A
T
G
A
G
T
T
G
A
C
A
T
T
A
G
T
A
A
G
C
A
T
3650
A
T
A
C
A
A
C
A
G
C
C
C
T
G
G
A
G
T
G
C
G
G
T
G
G
C
T
C
A
C
G
C
C
T
G
T
A
A
T
C
C
C
A
G
C
A
C
T
T
T
3700 |
var(3664):[A:0.07]
|
REPEAT
|
var(3668):[C:0.01]
G
G
G
A
G
G
C
C
A
A
G
G
G
G
G
G
T
G
G
A
T
C
A
C
A
A
G
G
T
C
A
G
G
A
G
T
T
T
G
A
G
A
C
C
A
G
C
T
T
G
3750 |
var(3743):[T:0.09]
G
C
C
A
A
C
A
T
G
G
T
G
A
A
A
C
C
C
C
G
T
C
T
C
T
A
G
T
A
A
A
A
A
T
A
C
A
A
A
A
A
T
T
A
G
C
C
G
G
G
3800
T
G
C
G
G
T
G
G
C
G
C
A
T
G
C
C
T
G
T
A
A
T
A
C
C
A
G
C
T
A
T
T
C
A
G
G
A
G
G
C
T
G
A
G
G
C
A
G
G
A
3850
G
A
A
T
C
A
T
T
T
G
A
A
C
C
A
G
G
A
A
G
T
G
G
A
G
A
T
T
G
C
A
G
T
G
A
G
C
C
G
A
G
A
T
T
G
C
A
T
C
A
3900
T
T
G
C
A
C
T
C
C
A
G
C
C
T
G
A
G
T
G
A
C
A
G
A
G
T
A
A
G
A
C
T
C
T
G
T
C
T
C
A
A
A
A
A
A
A
A
A
A
A
3950
A
A
A
A
A
A
A
A
A
A
A
A
A
T
G
C
C
A
G
C
C
T
C
G
G
T
G
C
C
T
C
A
C
G
C
C
T
G
T
A
A
T
C
C
C
A
G
C
A
C
4000 |
REPEAT
|
var(3969):[:0.01]
|
var(3988):[A:0.08]
T
T
T
G
G
G
A
G
G
C
T
G
A
G
G
T
G
G
G
T
G
G
A
T
C
A
C
C
T
G
A
G
G
T
C
A
G
G
A
G
A
T
T
G
A
G
A
C
C
A
4050
G
C
C
T
G
G
T
C
A
A
C
G
T
G
G
T
G
A
A
A
C
C
T
C
G
T
C
T
A
T
A
C
T
A
A
A
A
A
T
A
C
A
A
A
A
A
T
T
A
G
4100 |
var(4072):[G:0.01]
C
T
G
G
G
C
G
T
G
G
T
T
A
A
T
C
C
C
A
G
C
T
A
C
T
C
A
G
G
A
G
G
C
T
G
A
G
G
C
A
G
G
A
G
A
A
T
C
A
C
4150
T
T
G
A
A
C
C
T
G
G
G
A
G
G
C
A
G
A
G
G
T
T
G
C
A
G
T
G
A
G
C
C
G
A
G
A
T
C
G
T
G
C
C
A
C
T
G
C
A
C
4200 |
var(4196):[C:0.03]
T
C
C
A
G
C
C
T
G
G
G
T
G
A
C
A
G
A
G
T
G
A
G
A
C
T
C
T
G
T
C
T
C
A
A
A
C
C
A
A
A
C
A
A
A
C
A
A
A
C
4250 |
var(4235):[:0.93]
A
A
A
C
A
A
A
C
A
A
A
C
A
A
A
A
A
A
C
A
A
A
A
A
A
A
A
C
A
G
C
C
C
C
T
G
G
A
A
T
C
T
G
A
T
A
A
A
T
G
4300 |
NOT SCANNED
C
C
A
T
G
T
A
C
A
C
T
T
T
T
T
T
T
T
T
T
T
T
T
T
G
A
G
A
C
G
G
A
G
T
C
T
A
G
C
T
C
T
T
G
T
T
G
C
C
C
4350 |
REPEAT
A
G
G
C
T
G
G
A
G
T
G
C
A
A
T
G
G
C
G
C
A
A
T
C
T
C
A
G
C
T
C
A
C
C
G
C
A
A
C
A
T
C
T
G
C
C
T
C
C
C
4400
G
G
G
T
T
C
A
A
G
T
G
A
C
T
C
T
C
C
T
G
C
C
T
C
A
G
C
C
T
C
C
C
A
A
G
A
A
G
C
T
G
G
G
A
T
T
A
C
A
G
4450
G
C
A
T
G
C
G
C
C
A
C
C
A
T
G
C
C
T
C
G
G
T
A
A
T
T
T
T
C
T
A
T
T
C
T
T
A
G
T
A
G
G
G
A
C
A
G
G
G
T
4500
T
T
C
T
C
C
A
T
G
T
T
G
G
C
C
A
G
G
C
T
G
G
T
C
T
C
A
A
A
C
T
C
C
T
G
A
C
C
T
C
A
G
G
G
G
A
T
T
C
T
4550
G
C
C
C
A
C
C
T
T
G
G
C
C
T
C
C
C
A
A
A
G
T
G
C
T
G
G
G
A
T
T
A
C
A
G
G
C
G
T
G
A
G
C
C
A
C
G
G
C
A
4600
T
C
C
G
G
C
C
T
T
G
T
T
T
T
T
G
T
T
T
C
T
T
T
A
A
G
A
G
A
C
A
G
G
A
T
C
T
C
G
C
T
G
T
G
T
T
G
C
C
A
4650 |
REPEAT
A
G
G
C
T
G
G
C
T
T
C
A
A
A
C
T
C
C
T
G
A
G
C
T
C
A
A
G
T
G
A
T
C
T
T
C
C
T
A
C
C
T
C
A
G
C
C
T
C
C
4700
T
C
A
G
T
A
G
C
T
G
G
G
A
A
T
G
C
A
G
G
C
A
T
G
T
G
C
C
A
C
C
A
C
A
C
C
T
G
G
C
CATAAGCACT
4750 |
var(4734):[G:0.08]
TTTGTCATAG TTATTGCTGC CCCTGTGAAT GGTGAGGGGC TCTGCTTGGC
4800
AGAAGTAGGG CTCCTAGGAT TCCCTGGAGC TGCATTTGCC TGTGGGTTTG
4850
GGAGCTTCTT GGATCATGGT TCTTAGCACA TCATACAGAA GACACGGAGT
4900
CCACAAGATG GCAGGACCAC CTTCACCTAG TGGCCCAGAC CATGGATCCC
4950
CACTCATGCC CTTGGGTTTT GGCAAATGGC CATTTATTCT GTAGGAGGGT
5000
GAAGTAGATG CCTGGTAAGA CTGTGATAAG TAATGCTTGA ATTATTAGAC
5050
GTGACTCTAA CTTA
T
T
T
T
A
A
A
A
T
T
G
A
G
G
C
A
T
A
A
T
T
T
A
C
C
T
A
T
T
G
T
A
A
A
A
T
5100 |
REPEAT
G
T
A
C
A
A
A
T
C
T
T
A
A
C
T
A
T
T
C
A
G
C
T
C
A
A
T
G
A
T
T
T
G
T
T
A
C
A
A
T
G
C
A
T
C
C
A
C
T
C
5150 |
var(5122):[T:0.01]
A
T
C
T
A
A
T
C
A
C
C
A
C
C
C
A
A
G
A
C
A
G
A
A
T
G
A
G
G
T
T
C
C
C
T
C
T
T
G
T
C
C
C
C
T
C
C
C
A
C
5200 |
REPEAT
A
A
G
G
T
A
A
C
T
G
C
T
C
T
T
C
T
G
A
C
C
T
C
T
G
T
C
T
C
C
A
T
G
G
A
C
T
A
G
G
T
A
C
C
T
T
G
T
G
C
5250
T
T
A
C
A
T
T
T
C
C
T
G
T
A
A
A
T
G
G
A
A
T
C
A
T
G
C
G
G
G
A
T
G
T
G
G
T
C
T
G
T
T
G
C
T
T
C
T
G
G
5300
C
A
T
C
C
T
T
T
G
T
T
C
T
A
T
A
T
T
C
T
G
C
C
T
G
T
G
A
G
A
T
T
T
A
T
C
C
A
T
G
C
T
G
T
T
G
T
G
T
G
5350
T
A
T
C