Site      Genotype1 AD-pop    ED-pop    Total-pop Genotype2 AD-pop    ED-pop    Total-pop Genotype3 AD-pop    ED-pop    Total-pop AD-chi2   ED-chi2   Total-chi2
000596    CC        22        22        44        CT        2         0         2         TT        0         0         0         0.045     0.000     0.023     
001163    CC        21        19        40        CT        3         2         5         TT        0         0         0         0.107     0.053     0.156     
001927    AA        0         0         0         AG        4         0         4         GG        20        22        42        0.198     0.000     0.095     
002573    AA        18        20        38        AG        6         3         9         GG        0         0         0         0.490     0.112     0.527     
002602    GG        22        19        41        GT        2         3         5         TT        0         0         0         0.045     0.118     0.152     
002698    CC        0         0         0         CT        10        9         19        TT        14        14        28        1.662     1.361     3.016     
003083    CC        22        23        45        CT        2         0         2         TT        0         0         0         0.045     0.000     0.022     
003382    CC        0         0         0         CT        0         3         3         TT        21        20        41        0.000     0.112     0.055     
003397    CC        22        21        43        CG        0         2         2         GG        0         0         0         0.000     0.048     0.023     
003447    CC        0         0         0         CT        0         1         1         TT        23        22        45        0.000     0.011     0.006     
003455    --        0         0         0         +-        2         0         2         ++        20        23        43        0.050     0.000     0.023     
003561    CC        21        23        44        CT        1         0         1         TT        0         0         0         0.012     0.000     0.006     
003634    AA        19        16        35        AG        4         7         11        GG        0         0         0         0.209     0.741     0.848     
003643    CC        19        21        40        CG        4         2         6         GG        0         0         0         0.209     0.048     0.224     
003644    AA        0         0         0         AG        0         1         1         GG        23        22        45        0.000     0.011     0.006     
003948    CC        22        21        43        CG        0         1         1         GG        0         0         0         0.000     0.012     0.006     
005783    AA        0         0         0         AG        1         0         1         GG        19        21        40        0.013     0.000     0.006     
005987    GG        0         0         0         GT        0         2         2         TT        20        19        39        0.000     0.053     0.026     
006132    --        0         0         0         +-        3         4         7         ++        18        16        34        0.124     0.247     0.357     
006954    CC        19        21        40        CT        1         0         1         TT        0         0         0         0.013     0.000     0.006     
007310    CC        21        16        37        CG        3         4         7         GG        0         0         0         0.107     0.247     0.329     
007656    AA        0         0         0         AC        3         5         8         CC        21        18        39        0.107     0.342     0.407     
007853    GG        16        23        39        GT        8         0         8         TT        0         0         0         0.960     0.000     0.407     
008232    --        24        21        45        +-        0         2         2         ++        0         0         0         0.000     0.048     0.022     
008238    AA        21        18        39        AG        3         5         8         GG        0         0         0         0.107     0.342     0.407     
008260    CC        0         0         0         CT        3         5         8         TT        21        18        39        0.107     0.342     0.407     
008390    CC        21        18        39        CT        3         5         8         TT        0         0         0         0.107     0.342     0.407     
010206    AA        0         0         0         AT        1         0         1         TT        23        23        46        0.011     0.000     0.005     
010213    CC        0         0         0         CG        2         1         3         GG        22        22        44        0.045     0.011     0.051     
010262    CC        22        23        45        CG        2         0         2         GG        0         0         0         0.045     0.000     0.022     

Note:

AD: African_Descent
ED: European_Descent
Total: All_population
pop : population

Diallelic insertion/deletion polymorphisms are represented as:

+ : insertion allele
- : deletion allele

The + (inserted) allele for each site is listed below:

003455: A
006132: GCCTTGTCTGTTTT
008232: A