Site Genotype1 AD-pop ED-pop Total-pop Genotype2 AD-pop ED-pop Total-pop Genotype3 AD-pop ED-pop Total-pop AD-chi2 ED-chi2 Total-chi2 000781 -- 21 23 44 +- 2 0 2 ++ 0 0 0 0.048 0.000 0.023 000784 GG 0 0 0 GT 0 2 2 TT 23 21 44 0.000 0.048 0.023 000839 CC 22 22 44 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 000855 CC 22 23 45 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 000875 AA 0 0 0 AG 0 2 2 GG 23 20 43 0.000 0.050 0.023 000989 AA 0 0 0 AG 0 1 1 GG 23 21 44 0.000 0.012 0.006 000991 GG 21 22 43 GT 2 0 2 TT 0 0 0 0.048 0.000 0.023 001367 AA 0 0 0 AG 0 2 2 GG 16 14 30 0.000 0.071 0.033 001454 AA 0 0 0 AG 2 0 2 GG 15 16 31 0.066 0.000 0.032 001482 GG 14 20 34 GT 5 2 7 TT 0 0 0 0.436 0.050 0.357 001711 AA 1 0 1 AG 6 0 6 GG 17 15 32 0.240 0.000 1.053 001773 CC 22 15 37 CG 2 0 2 GG 0 0 0 0.045 0.000 0.027 001797 CC 9 1 10 CG 10 8 18 GG 5 6 11 0.490 0.600 0.227 001825 AA 0 0 0 AG 1 0 1 GG 23 15 38 0.011 0.000 0.007 001966 -- 0 0 0 +- 0 1 1 ++ 24 15 39 0.000 0.017 0.006 002064 -- 0 0 0 +- 2 0 2 ++ 22 16 38 0.045 0.000 0.026 002076 AA 23 16 39 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 002291 GG 24 19 43 GT 0 4 4 TT 0 0 0 0.000 0.209 0.093 002340 AA 0 0 0 AG 0 1 1 GG 23 22 45 0.000 0.011 0.006 002358 CC 0 0 0 CT 5 1 6 TT 18 22 40 0.342 0.011 0.224 002423 -- 0 0 0 +- 5 1 6 ++ 18 22 40 0.342 0.011 0.224 002468 AA 1 0 1 AG 5 0 5 GG 13 22 35 0.294 0.000 1.967 002478 CC 1 0 1 CG 0 2 2 GG 18 20 38 19.000 0.050 9.226 002549 -- 18 22 40 +- 5 1 6 ++ 0 0 0 0.342 0.011 0.224 002574 -- 5 1 6 +- 0 0 0 ++ 18 22 40 23.000 23.000 46.000 002710 CC 0 0 0 CT 6 1 7 TT 18 22 40 0.490 0.011 0.304 002992 CC 0 0 0 CT 0 1 1 TT 24 22 46 0.000 0.011 0.005 003203 CC 12 23 35 CG 10 0 10 GG 1 0 1 0.374 0.000 0.080 003218 -- 0 0 0 +- 6 1 7 ++ 18 21 39 0.490 0.012 0.312 004360 -- 0 0 0 +- 2 0 2 ++ 22 22 44 0.045 0.000 0.023 004432 CC 18 22 40 CT 6 1 7 TT 0 0 0 0.490 0.011 0.304 004478 GG 1 0 1 GT 1 0 1 TT 22 23 45 9.967 0.000 20.206 004588 CC 0 0 0 CG 6 1 7 GG 18 22 40 0.490 0.011 0.304 004664 AA 0 0 0 AG 6 1 7 GG 18 22 40 0.490 0.011 0.304 004760 AA 0 0 0 AG 8 3 11 GG 14 20 34 1.086 0.112 0.872 004950 CC 24 21 45 CT 0 2 2 TT 0 0 0 0.000 0.048 0.022 005179 AA 0 0 0 AG 1 0 1 GG 22 23 45 0.011 0.000 0.006 005203 -- 0 0 0 +- 5 1 6 ++ 18 22 40 0.342 0.011 0.224 005259 CC 0 0 0 CT 0 5 5 TT 22 18 40 0.000 0.342 0.156 005310 GG 18 22 40 GT 5 1 6 TT 0 0 0 0.342 0.011 0.224 005391 AA 0 0 0 AG 1 0 1 GG 22 23 45 0.011 0.000 0.006 005403 CC 0 0 0 CT 0 1 1 TT 23 22 45 0.000 0.011 0.006 005426 AA 22 20 42 AG 0 3 3 GG 0 0 0 0.000 0.112 0.054 005447 CC 12 18 30 CT 6 5 11 TT 4 0 4 3.035 0.342 3.187 005469 CC 18 22 40 CT 5 1 6 TT 0 0 0 0.342 0.011 0.224 005882 GG 22 20 42 GT 0 1 1 TT 0 0 0 0.000 0.012 0.006 006180 CC 20 5 25 CT 0 10 10 TT 0 8 8 0.000 0.306 8.658 006221 AA 0 10 10 AG 0 10 10 GG 20 3 23 0.000 0.040 10.244 006265 AA 14 17 31 AG 8 4 12 GG 0 0 0 1.086 0.233 1.131 006268 AA 0 0 0 AG 7 0 7 GG 15 21 36 0.787 0.000 0.338 006276 AA 0 0 0 AG 5 0 5 GG 17 21 38 0.362 0.000 0.164 006469 -- 11 1 12 +- 9 9 18 ++ 0 13 13 1.686 0.130 1.133 007101 CC 23 22 45 CG 1 0 1 GG 0 0 0 0.011 0.000 0.006 007169 CC 0 0 0 CG 2 0 2 GG 22 22 44 0.045 0.000 0.023 007170 AA 0 0 0 AG 2 0 2 GG 22 22 44 0.045 0.000 0.023 007265 CC 0 0 0 CT 6 1 7 TT 18 21 39 0.490 0.012 0.312 008173 GG 22 23 45 GT 2 0 2 TT 0 0 0 0.045 0.000 0.022 008231 AA 0 0 0 AG 0 1 1 GG 24 22 46 0.000 0.011 0.005 008265 GG 22 23 45 GT 1 0 1 TT 0 0 0 0.011 0.000 0.006 008291 CC 19 2 21 CT 4 11 15 TT 0 10 10 0.209 0.179 4.371 008300 AA 0 8 8 AG 0 10 10 GG 23 5 28 0.000 0.306 9.898 008482 CC 23 22 45 CT 0 1 1 TT 0 0 0 0.000 0.011 0.006 008516 AA 23 3 26 AG 0 10 10 GG 0 10 10 0.000 0.040 11.749 008541 CC 10 14 24 CT 8 8 16 TT 5 1 6 1.675 0.011 1.467 008663 CC 0 0 0 CT 5 1 6 TT 18 22 40 0.342 0.011 0.224 008756 AA 0 0 0 AG 1 1 2 GG 22 22 44 0.011 0.011 0.023 008761 -- 0 0 0 +- 6 1 7 ++ 18 22 40 0.490 0.011 0.304 008857 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 008938 CC 0 0 0 CG 6 2 8 GG 18 21 39 0.490 0.048 0.407 008956 AA 0 0 0 AG 6 1 7 GG 18 22 40 0.490 0.011 0.304 009133 CC 18 22 40 CT 6 0 6 TT 0 0 0 0.490 0.000 0.224 009205 CC 17 22 39 CT 7 0 7 TT 0 0 0 0.700 0.000 0.312 009219 CC 18 22 40 CT 6 0 6 TT 0 0 0 0.490 0.000 0.224 009413 AA 0 0 0 AG 0 1 1 GG 24 22 46 0.000 0.011 0.005 009518 AA 0 0 0 AC 6 1 7 CC 18 22 40 0.490 0.011 0.304 009660 AA 0 10 10 AG 0 10 10 GG 24 3 27 0.000 0.040 12.245 009670 -- 24 5 29 +- 0 10 10 ++ 0 8 8 0.000 0.306 10.308 009774 CC 5 1 6 CG 10 8 18 GG 9 14 23 0.490 0.011 0.663 009839 AA 5 1 6 AG 10 8 18 GG 9 14 23 0.490 0.011 0.663 009855 AA 22 23 45 AG 2 0 2 GG 0 0 0 0.045 0.000 0.022 009894 CC 18 22 40 CG 6 1 7 GG 0 0 0 0.490 0.011 0.304 010081 CC 18 22 40 CT 6 1 7 TT 0 0 0 0.490 0.011 0.304 010171 CC 5 1 6 CT 10 8 18 TT 9 14 23 0.490 0.011 0.663 010299 AA 0 10 10 AC 6 11 17 CC 18 2 20 0.490 0.179 2.759 010316 CC 24 5 29 CT 0 10 10 TT 0 8 8 0.000 0.306 10.308 010317 AA 5 1 6 AG 9 8 17 GG 10 14 24 1.119 0.011 1.090 010328 GG 1 0 1 GT 6 3 9 TT 17 20 37 0.240 0.112 0.253 010343 AA 18 20 38 AG 6 3 9 GG 0 0 0 0.490 0.112 0.527 010347 CC 18 22 40 CT 6 1 7 TT 0 0 0 0.490 0.011 0.304 010376 AA 17 21 38 AC 5 2 7 CC 0 0 0 0.362 0.048 0.320 010393 CC 10 14 24 CG 8 8 16 GG 5 1 6 1.675 0.011 1.467 010422 AA 6 13 19 AC 7 8 15 CC 8 1 9 2.249 0.027 2.962 011130 AA 0 0 0 AG 1 0 1 GG 23 22 45 0.011 0.000 0.006 011139 AA 3 0 3 AG 12 1 13 GG 9 21 30 0.107 0.012 0.872 011289 AA 23 22 45 AC 1 0 1 CC 0 0 0 0.011 0.000 0.006 011321 CC 9 16 25 CT 10 5 15 TT 5 1 6 0.490 0.499 2.100 011426 CC 23 22 45 CG 1 0 1 GG 0 0 0 0.011 0.000 0.006 011450 CC 18 22 40 CT 6 1 7 TT 0 0 0 0.490 0.011 0.304 011462 CC 18 22 40 CT 6 1 7 TT 0 0 0 0.490 0.011 0.304 011480 CC 18 22 40 CT 6 1 7 TT 0 0 0 0.490 0.011 0.304 011583 AA 13 22 35 AG 10 0 10 GG 1 0 1 0.296 0.000 0.080 011598 CC 24 20 44 CG 0 2 2 GG 0 0 0 0.000 0.050 0.023 011759 CC 24 10 34 CT 0 10 10 TT 0 2 2 0.000 0.050 1.141 011973 -- 0 0 0 +- 0 1 1 ++ 24 21 45 0.000 0.012 0.006 011974 AA 0 10 10 AG 0 9 9 GG 24 3 27 0.000 0.177 13.753 012011 AA 6 1 7 AG 9 8 17 GG 9 14 23 1.361 0.011 1.553 012199 CC 9 14 23 CT 10 9 19 TT 5 0 5 0.490 1.361 0.130 012281 AA 0 8 8 AG 0 10 10 GG 24 5 29 0.000 0.306 10.308 012433 AA 8 1 9 AT 11 8 19 TT 5 14 19 0.114 0.011 1.102 012774 AA 0 0 0 AG 1 2 3 GG 23 21 44 0.011 0.048 0.051 012924 CC 0 0 0 CT 6 1 7 TT 18 22 40 0.490 0.011 0.304 012956 CC 24 19 43 CT 0 4 4 TT 0 0 0 0.000 0.209 0.093 012966 AA 0 0 0 AG 6 1 7 GG 18 22 40 0.490 0.011 0.304 013106 AA 22 23 45 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 013168 AA 17 22 39 AG 6 1 7 GG 0 0 0 0.517 0.011 0.312 013204 AA 0 0 0 AG 6 1 7 GG 17 22 39 0.517 0.011 0.312 013217 AA 0 0 0 AG 6 1 7 GG 17 22 39 0.517 0.011 0.312 013233 -- 0 0 0 +- 2 0 2 ++ 21 23 44 0.048 0.000 0.023 013250 AA 15 22 37 AG 8 1 9 GG 0 0 0 1.019 0.011 0.541 013266 AA 23 22 45 AT 0 1 1 TT 0 0 0 0.000 0.011 0.006 013318 CC 18 23 41 CG 5 0 5 GG 0 0 0 0.342 0.000 0.152 Note: AD: African_Descent ED: European_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 000781: ccttcgcgttcggc 001966: g 002064: ggc 002423: GAGCCCGGCCTC 002549: Ttcccggcggaggttgaggatctcg 002574: GA 003218: g 004360: atag 005203: g 006469: gt 008761: gtgccttcccgaagggg 009670: a 011973: gg 013233: ag