BSG Color FASTA

The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.

*Display courtesy of GeneSNPs

GTCCAGCGGG GATGTGGGTG GCAAGGTCCA GGTGGTTCTA TAGGGGAGGG 50 | NOT SCANNED ATGGAGGGGC GGAGGAGCGG GTGGGGGAGG GGCGGAGGGG CGAGGGGTGG 100 GTGGGAGGGG CGGAGGGGCG GGTTGGGGAG GGGCGGAGGG GTGGGGTGGG 150 TGGGTGGGGG GGGCGGAGGG GTGGGTTGGG AGGGGCGGAG GGGGTGGGTT 200 GGGAGGGGCG GAGGGGGTGG GTTGGGAGGG GCGGAGGGGG TGGGTTGGGA 250 GGGGCGGAGG GGGTGGGTTG GGAGGGGCGG AGGGGTGAGT GGGGGAAGGT 300 GGTCTAGAGG ATCCCACCCT TCTTTAGATA TGGGGCGTCT CTGCTAAAAA 350 | REPEAT TACAAAAATT AGCCGGGCGT GGTGGTGCGC GCCTGTAATC CCAGCTACTC 400 AGGAGGCTGA GGCAGGAGAA TCGCTTGAAC CCGGGAGGCG GAGGTTGCAG 450 AGAGTCGAGA TCGCGCCGCT GCACTCCAGC CTGGGTGACA CAGCGAGACT 500 CCAACACACA CACACACAAA AGATATGGCG CGTCTCATTC ATTCACAAGT 550 | REPEAT TCCTCTTCAA AGGTTTGGCT CGTTCAGCGC CCTCGTTCTT CGTTTCCTAC 600 TTCCAAGGCC AACCTGACTT CCTCACCCTC TGGGCCTCCC CGTCTGAGTC 650 TCAGTAAACA AGTTTCCCGC CGGTCCTGAT CTGCAGAGAT GGCACCTGCC 700 ACCCACTCTG CACATCCCCC TCCCGTCGCC ACGGGCTCTT CCCGCCAGTG 750 TAGCCACATT CCTGCCCCTT TCCAGTTAGC CCTTCGCGTT CGGCCCTTCG 800 | var(781):[:0.98] | var(784):[G:0.02] CGTTCGGCTT AGTCTGCGGT CCTCTTGCAT TGCGACTCCG AGTTTAACTT 850 | var(839):[T:0.01] CCAACACACA CTTTCAACCT CCAAGAGACG CCCCCACCTG TGTCGCCCCA 900 | var(855):[T:0.01] | var(875):[A:0.02] ATAGCGACTT TTCTCACCGT GGTCGCCGCG GAACTTCAAG GGTCCTTCCT 950 | REPEAT ACCCGCGTTG CTGAGAGTCT GGGTTTACGC GTCACCTCGG GCGGGACCCG 1000 | var(989):[A:0.01] | var(991):[T:0.02] ATCCTCCGCT CCTGAGGCCC CCACAATGAA GCAGTCGGAC GCGTCTCCCC 1050 AAGAAAGGTA ACCGCCAGCC TCTCCTGAAA CAGAATGGGA TCCAAATGGG 1100 ATATTTGGGG GCGGCGAGTC GGTCCCGCAA AGAGAAACCA GCACTTAGAA 1150 | REPEAT AATTTCTCAG CGAGACCACT TTACTTGTAC GGAAGGGGGC TGCCTGCGTG 1200 GGATGCAATC TCCAGAGCAC ACGGGACAAA GGAAGGGAGC TTCTGTTCCT 1250 CTGTCCTTTC CCTGTTGGCT GGGGTTGGAC GCCCACAATC TAAGCTGATC 1300 CCGGTTGGCT AAAACTTAAA ACTTTTTTAA AATAGGGTAA ACGCGCCACC 1350 TGCGAGGAAA GAAGAAGGGG GTAAGGTTGA TTGACAACTT TAGACCTGGA 1400 | var(1367):[A:0.03] AGTTGAGTTT CTGAAGAGGA ACTTACTTGT CCCAACCAAA TGGTGCACAG 1450 | REPEAT GACGTTTATA CTAAGAAATT ATTCATTTTC TGAGATCCAG ATTCAAGTGC 1500 | var(1454):[A:0.03] | var(1482):[T:0.09] CCTTTAAGTA TTTTTATTTG GGCGGAGGAG GTCACTTCCT CCCACCTAAT 1550 TTATTAATAC GTTCATATAT ATATATATAT ATATGTACAT TTTTAAAGGC 1600 AGAGATGTGC GTCTCGCCAT GTTGCCGCGT CTGGTCTCGA GCTCCCGGGC 1650 | REPEAT TCAAGCGATC TTCCCGCCTC GACCTCCCAA GGCTCTGGGA GTACAGACGT 1700 GAGCCACAGC GGCCGGCCCG TGTTTAACTC AGATAAAATC TGGGTAACAC 1750 | var(1711):[A:0.10] ACTTTCAACG CTTCAACCCC CTCGGGCGCA CCGCTCTGCG CTCATTGCAA 1800 | var(1773):[G:0.03] | var(1797):[C:0.49] CTTTGAAAGC AGGAAGGAAG AAATGCGCAG GCTCCAGCCG CGTCCCCGCA 1850 | var(1825):[A:0.01] GGCCCCACTC CCGTTTCCTA GCAACGCCGG GTCACGTGCG CCGCCGCCCG 1900 GATTCCGTAG CGTGAGCCTG CCGGAGCCGG CGCGTACATG CGAGCGTGTG 1950 CGCGCGTGCG CAGGCGGGGC GACCGGCGTC CCCGGCGCTC GCCCCGCCCC 2000 | var(1966):[:0.01] CGAGATGACG CCGTGCGTGC GCGCGCCCGG TCCGCGCCTC CGCCGCTTTT 2050 | Exon 1 | UTR TATAGCGGCC GCGGGCGGCG GCGGCAGCGG TTGGAGGTTG TAGGACCGGC 2100 | var(2064):[:0.03] | var(2076):[G:0.01] GAGGAATAGG AATCATGGCG GCTGCGCTGT TCGTGCTGCT GGGATTCGCG 2150 M A A A L F V L L G F A 12 CTGCTGGGCA CCCACGGAGC CTCCGGGGCT GGTGAGGAGC GGGTAGGGGG 2200 L L G T H G A S G A 22 CGGGGGTGCG GTCCTGCAGG GGCCGGGAAT GGAGGCCGCG GTGCCGACCC 2250 GAAGCCGACG GGAGCCTGGG GCCTCGGCGC GGGGCGGCCT GGGGTGCGAA 2300 | var(2291):[T:0.04] AGGCCGGCCC CGGGGGCTTC CCGCGCCAGC ATGGAGCTTG GGGGTGAAGT 2350 | var(2340):[A:0.01] CCCAGGGTTT GAGGGGGGAC TAGAGGTTCC TCCCGGCGCG GCCTGCCGGG 2400 | var(2358):[C:0.07] CTCCCCCGGG CGCTCCGGCC TCGAGCCCGG CCTCTGTGTG TGGGCGTGAA 2450 | var(2423):[:0.07] GCTCCCTGCT TGGAGGCGGG AGCCAGGGGG TCCTGGCCAG GCCGGTCTTG 2500 | var(2468):[A:0.09] | var(2478):[C:0.05] GTCAGGGGAG GTGGGCGTCT TGCTTTTCGG TCACCTGGGG TTGGGGGTTT 2550 | var(2549):[:0.93] CCCGGCGGAG GTTGAGGATC TCGGACCTGC TTCCTGGGTG AGGGCGTCTG 2600 | var(2574):[:0.13] CGAAGGCGGT TGGAGGTGGC CCGCCCGCCG GTCCCATCGG CCAGGAGAAG 2650 GGAGACCCAA AGCCTGGGTG AGCGTCCCCT TTGGCCTGGA GCCAGGGGTC 2700 AGGGGCTGGT TGGTGCCTGC CCAACCCGTC CTGCTGGGGC TGGACTCCGC 2750 | var(2710):[C:0.07] AGGACCTGGG GAAAGCGGCC TGGGCGTGGA ATCTGGAGAC GGGTCCACCC 2800 TGCCTGCGAG TGTTAGGGTC AGAGACCCTC CCCTGAGACT CTCTGGGGCC 2850 CCCGCAAGGG CCCGTGCGGC CTGGAGCGAT CATCTTGGCG CTCCCTTCTG 2900 GAAAAGGGGC TTTTGTCCTC CAAGAGCACA TGGAGGCTCT GAGTGGGTCA 2950 GCCCTCCGGA TCGGGAAGGG ATTACCGTTC TTCACGGGAT TTAGCCCTGG 3000 | var(2992):[C:0.01] CGTCTTGCCT AGGGCGTGCA CCTGCCCCCG GGTGTTCTCC CAGACTCTTA 3050 AGACCTCGCA GGCTCCCTCG AGGGGCCCTG CGTGGAAGGG AAGGCGGAAT 3100 CTCCCTCTGA TTCTGCCTGG ATTCAGCACC CAGAATGAGG TGGTCTCTGA 3150 ACGCCCCTCC TCCTTTACAG GCGAGGAAAC AGCCCTGTGG GAAGTCGAGG 3200 TTCCAAGGTC ACAGTGAGGG GGCCCTGGCC ACCCGATTCA GCGCAGGAAA 3250 | var(3203):[G:0.13] | var(3218):[:0.08] TAGTGAGAAA GTCGTTTTTA GCCGACTCTG ACCCGCATTC GGTTTCCAGT 3300 | NOT SCANNED GCTGTCTTAG GAGGGCCGTG TGTTGAGGGT GGGCAAACGT GGTTTGGAGA 3350 GCGCATTTGG GAAATGGATT GAGGTGTGTT TTTCCGGGAG AAAAGCATGA 3400 CATCCTTTCT TGCTTCATAG AAAATTTCTT CCTTTGTTGA GACCCCCATT 3450 TGGTTCTGGG TTAAAGATTT ATAGTGAGGC CGGGCGTGGT GGCTCACACC 3500 | REPEAT TGTAATCCCA GCACTTTGGG AGGCTGAGGC GGGTGGATCA CCTGAGGTCA 3550 GGAGTTCAAG ACCAGCCTGG CCAACATGGT GAAACCCCAT CTCTACTAAA 3600 AATACAAAAA TTAGCTGGGC GTGTTGGCGC ACGCCTGTAA TCCCAGCCAC 3650 TCAGGAAGCT GAGGCAAGAG AATCGCTTGA ACCTGGGAGG TGAAGGTTGC 3700 AGTGAGCTGA TATCATGCCA CTGCACTCCA GCCTGGGTAA CAGGGAGACT 3750 CTGTCTTTAA AAAAAAAAAA AAAAGAGGTC GGGCATGGTG GCTCACGCCT 3800 | REPEAT GTAATCCCAG CACTTTGGGA GGCCGAGGCG GGCGGATCAC GAGGTCAAGA 3850 GATCAAGACC ATCGTGGCTA ACACGGTGAA ACCCCGTCTC TACTAAAAAT 3900 ACAAAAAATT AGCCTGGCGT GGTGGCGGGC GCCTGTAGTC CCAGCTGCTA 3950 GGGAGTCTGA GGCAGGAGAA TGGTGTGAAC CAGGGAGGCG GAGCTTGCAG 4000 TGAGCCGAGA TCGCGCCATT GCACTCCAGC CTGGGCGACA GAGCGAGACC 4050 CCGTCTCAAA AAAAAACAAA AAAAAAATTT ATTGTGACCG ATGTGTTGGG 4100 AACAAGGTGC AGAGCTGGAG GGTCTGGCCT CCTGAAGGGT CAAGAGCAAG 4150 GGCTTCGAGC CTCTGTCCTG GGCATTGAGC CGTAGGGGGC CTTGGGCAGA 4200 GGCTGGGGAG GGGGCTCCTT CTTCCAGAGG CTTTGCCAGC TAACTCCTGA 4250 CCTACGTCTG AGATTTCGTC TTCCTGGTAA CCAAAGTGGC CCTTTATCGA 4300 ATGTCTCCTG GGCAAGGGCC TGGCCCCAGC ACTGCGGCCA GCTCTCTGGG 4350 GAGACACAGA TAGGAGCCCA TGGGTGAGGT GAGCGCGGAA GATAAGCCGC 4400 | var(4360):[:0.02] CCCCGCCAGC CCTGTGGAAA CCCAGCCAGG CCTGACTGGG TTTCAAGCAC 4450 | var(4432):[T:0.07] AGCACGAGGT TCCCACATTG AGCTAATTTG GACAGCCAAG TGGGTGAAAG 4500 | var(4478):[G:0.03] ACCTTTGGTC TCTCCCTGCT GGGTAGGGTG GTTCACAGTT TTGTTCCTTT 4550 TGTGCATTTG TGCAGGAGAC TGAGAAGGGT TTCTTCTGAG CAGAAAGCTT 4600 | var(4588):[C:0.07] AGCCTGGGGC TTACTGGCCA GAGCTGCCTG CAGCCTGGGA AGCAGGTGGA 4650 GTCTGCAGTG CTGGCAGCGC CGCCGTGCAG CGGTGTAGCC GTGTGTGCGC 4700 | var(4664):[A:0.07] GTGTGTGTGT GTGGTGAGAA ACCCCACTTT TGCTGGGGAC TGACTCGTGA 4750 AGACCACAAG GTCTGGGCAA CACAGCCTTG GCCCGTGTGG GGTGGACACT 4800 | var(4760):[A:0.12] GCTGTTTGCT CTGTGAATTC GTGACTGTGT TTGCCTCTCC TGAAACTTGC 4850 TTCAGGGGCG TCTGCGGGTT GGTGGGGCAC AGCCGGGTGG GGTGAGTGCC 4900 CAAGGTTGGC CGTCCGCGTC TCCTGTGGGC TTGTCGGGGA CCGGAGGGCC 4950 | var(4950):[T:0.02] GGGGTGTGCT AGCTGGGTCC CGAGGGTGGA GGGCTTCACC CCCGAGCCTC 5000 AGATGAGAGG AGTGGGAGTG CCTGGCTGCG GCCGGTGGGG GTGGGTGGGG 5050 GAGGTGCCCG AGGCTGCTTC CCAGAGCTGT TCTCGCTGGC TGCTGTCTGA 5100 GCACTGGGGT GGGTGGGGAG GAGGGCGGGT GGGGGCGGGC AGCCTTATCC 5150 TGCGGGGCTG CTTGTGTACA AGTACCACGC GGCCTGCCTG GCCCTGAGCC 5200 | var(5179):[A:0.01] CTGGGCAAGG AGGCGGAGGC TGTTTTTAGA TGAAGGTGAC TTTACTTGAG 5250 | var(5203):[:0.07] AACATGGGTT ACGTCTCATG TGGCCAGAAT CGAATTCTAA CCTTTCTGGG 5300 | var(5259):[C:0.06] GCTGTGGCCG AGGGTCAGGC GCCGTCCCTC CTCCTGCTGC TCATGGGTGG 5350 | var(5310):[T:0.07] AGGCTCCTGG TGCGGCGGGC GAGATGGGGT GGTCCGTGGG GTGGGGGCGC 5400 | var(5391):[A:0.01] TCTGCATTGT CCCCGAGGAG CCTCTATGGA GGCTTTCTCT TCCGGACGCC 5450 | var(5403):[C:0.01] | var(5426):[G:0.03] | var(5447):[T:0.21] CCCCCACCCC CAGTGACACG TCAATACACA GACACCAGCA TCATCAGCAT 5500 | var(5469):[T:0.07] CCGGAGGGAC ACAGGGTTGT TCCATCCAAA GCCTTTTGGT CCCTTTGGGA 5550 GCGATGCTGC CCGCTGAGAA GCTGGCGGAC CCAGCGGGAG CACCGGGACC 5600 GGTGCAGATG GCGCCTGGGA GCCCGGGACT CCTGGAAAGG TGGCTGGGGG 5650 CAGCTCGGCT GCGGGCCCCA CCTGGTCCTC CTCACTTTCC TGTGTGCCCT 5700 GCCCTGCCTG GAGGTGGGGT GAGGTGAGTC AGGGGCCAGC CCTCTCCTAG 5750 CACCCCTGGG TGAGGAGGAT GTGGAGCCCA GCCCTGCAGG TCTGGAGGAT 5800 GAGGAGAGGG GCTGCTGCAG GGCAGGAAGG AGCTTGCCAG CTGGGCAGCC 5850 TCTGGCTGTG