BGLAP Color FASTA

The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.

*Display courtesy of GeneSNPs

TGTATTCTGT TATACTATTG GTTATGTGTC TGTTCTTATA ACAGTACCAT 50 | REPEAT GCTGTTTTGG TTACTAGAGC CTTGTACAAT TTGAAGTCAG GTACTGTGAT 100 GCCTCCAGCT TTGTTCTTTG TGCTCAGGAT TATTTTGACT ATCTGCCATT 150 | REPEAT GCCCAATATT TAAATAACGT GTATATTAGA ATGACTTGTA GAGCCTTCAC 200 ACATCTAACA CATATCCTCC ATGCCACAAT TGTGTGTCCT TTGAGGGCGA 250 ACTTAACTTT TGAAAGTGGC CCGACATCAC TTGGGGCCAC ATTGGGTGAA 300 GAAAGGAGAA GATGATGATC AAGCTGAATG ACACAGTAGC AGCTTGGCTG 350 | var(313):[C:0.38] | var(327):[A:0.50] CACCACAATG AGACAGATTT TCCTATGGGC TCAAAGTGCA TTTCCAAGAG 400 AAGCTTTCTA GTAGGGCTCA AGTGGCGGCA TCTCTGTCGA ACTCTCTCCA 450 TCCTTCATGT CAGTATCCAA TGTACATCTA CTTATAGCCA CTTGACAGCC 500 CCCTTCCTGG GGCAAACACT CATATTCCTG AGGGATACAG GTCCCCAAAT 550 TTATGGCTCC TGGATCTCCC TGGTCTTCTC TTCCCAATAC CAGTTAGCTG 600 TAGCCTGAAG GCCCTGCTGC AGCTTGGGAA GGGCCCCGGC TGGGAGGCAG 650 TGACAAGTGG AAGGCCGGCA GCCGCTCTGC TCCCTACTGT CCCCACTCCC 700 TCTGCTCTCC CCACATCACA GACTGGCCTG GGGGACTGGG CAGCAGGCGC 750 GAAAGTGGTG GTGACAAAGG CCCCCCCCCC AAGCCTGGTG CCATCTTGCA 800 | NOT SCANNED GGGCACAGCT CCGAGTTGTG TCTTGGGCAC TCCCAGGGCC CCCTGCTGAG 850 TCCTCAGGCA AGGCGCTGCT CCACTATCGC CACTCAGTCA CCATGAGGCC 900 | REPEAT ATGGGTCACT CCTGTCTCTG GGTCCTGGCT TCCAAATTGG CTAGATAATG 950 ATCCCAGGGC CTCACCAGCT CTGAGATTCA GTGCTATCCT AAGAGGAACA 1000 AAGCCCCCTG CTCTTAAAGC CATGCCCCAC CCATTCCAGC TACAGACCCT 1050 CACGTTGTTT GACATGGGCA ATTTCCATGT CTGTAACTCA ACTGAAAGTG 1100 TACTTAATTC AAGAAAGTTT CTCGCTAGAA AGCTCTGTTG AGGTCAGAGG 1150 ATTGAAGGGC CACTTTGGGG ACCCTTGCTG AAGATGATGG GCTCTGCTCT 1200 GGGGATGCCC AGCCTAGGTG GTCACAGAAC CCAGCTTGCT ATAAATACTT 1250 GCCGAATGGT GGGGACTTCC TGATGTGCCT TCATCCTAAC ATGCTCTGCA 1300 GGGCCCATGA CTTAGCCACA GACTCCATCC ATATTGTCCT GGGGGAAACC 1350 CCAGGCCTGG AGTCAGGGAC AGTGGAGGGC AAGGATTTGG GTTTTCTTAG 1400 ATCCCAGTTT GTCTGTTGTC TCCCATTGAT TTCAGGCTCT ACACAGAGAA 1450 CAGAGGGAGC TGGTTGCTGT GCTGAGGGAG CCTGAGTGAG GAGACCGCCA 1500 GCCCCAGAAG CAGAGGGCAG TCAAGGTCAA GAGCCTGTGG TCCAGCATGC 1550 CTGGCCTGGG CGGGCTACCT CTGAGAACGG CTGAAATGGT GCCCCAGTCC 1600 | var(1592):[:0.97] ATCAGCAGTG ATGGAATTTG CTGGAGGACT AGGCCAGAGC AAGCCTCACT 1650 GCCACTGTGC CTTTGGGGCA CCCTTGGGGT TGGACATACA CCCCCTTTAG 1700 ATTCCTCTGT TTCTTCTACC TGGATAATTC TTGGCCATGT TCTCTCTTCT 1750 CTAGGTTCAG GTCAGCTCTG CCCCTCCGCC CCCCTCCTGC TGGTTCCCCA 1800 GCCCTTTTCC CTGGCCCTGG CTTGGAGAAT CTGTTTTCAA TCTCCACTGA 1850 TTGCCCCCTT GCTGGCCAGC CCAGGGGCCT TTACCATGTT CTCTCCACAT 1900 CCGTAAATAA ACTTCCTTCA CTACACTGTA ATCTGTGAGC ATGCTTCCTC 1950 | NOT SCANNED TGCCCTGGCC TCTCTTGGGC CAAGACCTGC TCCTGGGCTC CCAAATGCTG 2000 GCTCCAGTCA AGGCTTCAGT CGTGGTCCTC TGGGAGCATC CAGGCTGGGG 2050 TGGTTTGGCA AGGGGCTTAC TAGACCATCA TGTGCAGAGA GCAGCAGAGC 2100 CCCTTGTACA AAAACCAGGA CCCCTGGGTT CCCTGTGGAT AGGATGAGCT 2150 GCCAAGGAGA TGTCACTCTT GGCACCCTCC AAGAATCATT ACGGCCGGGT 2200 | REPEAT GCAGTGGCTC ATGCTTGAAA TCCCAGCACT TTGGGAGGCC GAGGCGGGTG 2250 AATCACCTGA GGTCAGGAGT TCGAGACCAG CCTGGCCAAC ATGGTGAAAT 2300 CCTGTCTCTA CTAAAAATAC AAAATTAGCC AGGCATGGTG GCATGTGCCT 2350 GTAATCCCAG CTACTCGGGA GGCTGAGGCA GGAGAATCAC TTGAACCCGG 2400 GAGGCGGAGG TTGCAGTCAG CCAAGATTGC GCCACTGTAC TCCAGCCTGG 2450 GCAACAAGAG TGAAACTCCA TCTCAAAAAA AAATACAGAA TTAGCCAGGC 2500 | REPEAT ATGGTGGCGT GTGCCTGTAA TCCCAGCTAC TCAAGAGGCT GAGGCAGGAG 2550 AATCACTTGA ACCTGGGAGG CAGAGGTTGC AGTGAGCCGA GATCGCACCA 2600 | NOT SCANNED TTGCACTCCT GCCTGGGCGA CAGAGCGAGA CTCCGTCTCA AAAAAAAAGA 2650 ACCGCGAGCA CTTTGTTTCT CTTGCTTCTT CCACTTCACT CTTCTTCAGC 2700 CAGGGCAGCC AAAGGCAGGA TGGGTGCTTC CCGGATCCAC CAGAGGGGGA 2750 AAGGGGTTGG GCGTGTATGG GGGCAGAACT TTTCCCTAGT GAGAGCCTTG 2800 GTGAGGTCTG CTGGAGGCAC ACTGGGGACA CAGGCAAGCA TCAGGTGGTC 2850 CCAACTTCCC ACCCCCCTCC CATAAACGGC ACTTGGCTCA GTCTCCCTCT 2900 GCCCACCTTG TCACCATGGA GCTGTGGCAT TCAAGCATCC AAATGCCCTG 2950 CTTCTGTCAG GCCTGCCCCG TCGGGTGCTT TGTTTACTTG TCAGGTTGGG 3000 CAGATGGTCT CAAGCCCTGG TTGGTGGGTG GGTGAGTGAG GAGACAGGTT 3050 AGACAGGGGA AGGTCCCAGG ACATGTCTTC CCTCTCTGGG CTGACCTGAG 3100 GCAGTGGAGG CTCTCAGGTG TGGGATGGGG TTTTCAGGCT GGGATGTTCT 3150 GTACCGTAGA GGATAGGCCT TCCTATTACT TATCGGAGCA CTACGGGAGG 3200 GCAGGTCCCT CCCCAGGGTG TTTAACACTG GAGGCTGCAG GGTCAGGAGG 3250 AGAATCGTGG GGCCAGGAGG GCAGAGGCAC ACTCCATCTT CGTGCTCCTC 3300 ACAGGCCCTG CCTCCCTGCC TGCTAAGGAC ACAGGGAAGG GGGTCCCCAC 3350 CTCAGTGCCT GCCTCCCTTC CCTGTGCCTG TGTACCTGGC AGTCACAGCC 3400 ACCTGGCGTG TCCCAGAAAC CAACCGGCTG ACCTCATCTC CTGCCCGGCC 3450 CCACCTCCAT TGGCTTTGGC TTTTGGCGTT TGTGCTGCCC GACCCTTTCT 3500 CCTGTCCGGA TGCGCAGGGC AGGGCCTGAG CCGTCGAGCT GCACCCACAG 3550 CAGGCTGCCT TTGGTGACTC ACCGGGTGAA CGGGGGCATT GCGAGGCATC 3600 | var(3574):[A:0.04] CCCTCCCTGG GTTTGGCTCC TGCCCACGGG GCTGACAGTA GAAATCACAG 3650 GCTGTGAGAC AGCTGGAGCC CAGCTCTGCT TGAACCTATT TTAGGTCTCT 3700 | var(3682):[A:0.04] GATCCCCGCT TCCTCTTTAG ACTCCCCTAG AGCTCAGCCA GTGCTCAACC 3750 TGAGGCTGGG GGTCTCTGAG GAAGAGTGAG TTGGAGCTGA GGGGTCTGGG 3800 GCTGTCCCCT GAGAGAGGGG CCAGAGGCAG TGTCAAGAGC CGGGCAGTCT 3850 GATTGTGGCT CACCCTCCAT CACTCCCAGG GGCCCCTGGC CCAGCAGCCG 3900 CAGCTCCCAA CCACAATATC CTTTGGGGTT TGGCCTACGG AGCTGGGGCG 3950 | var(3923):[C:0.18] GATGACCCCC AAATAGCCCT GGCAGATTCC CCCTAGACCC GCCCGCACCA 4000 TGGTCAGGCA TGCCCCTCCT CATCGCTGGG CACAGCCCAG AGGGTATAAA 4050 CAGTGCTGGA GGCTGGCGGG GCAGGCCAGC TGAGTCCTGA GCAGCAGCCC 4100 AGCGCAGCCA CCGAGACACC ATGAGAGCCC TCACACTCCT CGCCCTATTG 4150 | Exon 1 | UTR M R A L T L L A L L 10 GCCCTGGCCG CACTTTGCAT CGCTGGCCAG GCAGGTGAGT GCCCCCACCT 4200 A L A A L C I A G Q A 21 CCCCTCAGGC CGCATTGCAG TGGGGGCTGA GAGGAGGAAG CACCATGGCC 4250 CACCTCTTCT CACCCCTTTG GCTGGCAGTC CCTTTGCAGT CTAACCACCT 4300 TGTTGCAGGC TCAATCCATT TGCCCCAGCT CTGCCCTTGC AGAGGGAGAG 4350 GAGGGAAGAG CAAGCTGCCC GAGACGCAGG GGAAGGAGGA TGAGGGCCCT 4400 GGGGATGAGC TGGGGTGAAC CAGGCTCCCT TTCCTTTGCA GGTGCGAAGC 4450 | Exon 2 G A K 24 CCAGCGGTGC AGAGTCCAGC AAAGGTGCAG GTATGAGGAT GGACCTGATG 4500 | var(4458):[C:0.01] P S G A E S S K G A 34 GGTTCCTGGA CCCTCCCCTC TCACCCTGGT CCCTCAGTCT CATTCCCCCA 4550 CTCCTGCCAC CTCCTGTCTG GCCATCAGGA AGGCCAGCCT GCTCCCCACC 4600 TGATCCTCCC AAACCCAGAG CCACCTGATG CCTGCCCCTC TGCTCCACAG 4650 34 CCTTTGTGTC CAAGCAGGAG GGCAGCGAGG TAGTGAAGAG ACCCAGGCGC 4700 | Exon 3 A F V S K Q E G S E V V K R P R R 51 TACCTGTATC AATGGCTGGG GTGAGAGAAA AGGCAGAGCT GGGCCAAGGC 4750 Y L Y Q W L G 58 CCTGCCTCTC CGGGATGGTC TGTGGGGGAG CTGCAGCAGG GAGTGGCCTC 4800 TCTGGGTTGT GGTGGGGGTA CAGGCAGCCT GCCCTGGTGG GCACCCTGGA 4850 GCCCCATGTG TAGGGAGAGG AGGGATGGGC ATTTTGCACG GGGGCTGATG 4900 CCACCACGTC GGGTGTCTCA GAGCCCCAGT CCCCTACCCG GATCCCCTGG 4950 | Exon 4 A P V P Y P D P L 67 AGCCCAGGAG GGAGGTGTGT GAGCTCAATC CGGACTGTGA CGAGTTGGCT 5000 E P R R E V C E L N P D C D E L A 84 GACCACATCG GCTTTCAGGA GGCCTATCGG CGCTTCTACG GCCCGGTCTA 5050 | var(5029):[A:0.04] D H I G F Q E A Y R R F Y G P V 100 GGGTGTCGCT CTGCTGGCCT GGCCGGCAAC CCCAGTTCTG CTCCTCTCCA 5100 | UTR 100 GGCACCCTTC TTTCCTCTTC CC