Site      Genotype1 AD-pop    ED-pop    Total-pop Genotype2 AD-pop    ED-pop    Total-pop Genotype3 AD-pop    ED-pop    Total-pop AD-chi2   ED-chi2   Total-chi2
003113    CC        14        15        29        CG        3         0         3         GG        0         0         0         0.159     0.000     0.077     
003196    AA        7         8         15        AT        7         7         14        TT        3         0         3         0.279     1.389     0.011     
003293    AA        1         1         2         AC        2         7         9         CC        13        5         18        2.939     0.467     0.336     
003788    CC        17        21        38        CG        3         0         3         GG        0         0         0         0.131     0.000     0.059     
003789    --        18        21        39        +-        2         0         2         ++        0         0         0         0.055     0.000     0.026     
003815    CC        18        11        29        CT        2         10        12        TT        0         0         0         0.055     2.051     1.205     
003915    --        13        20        33        +-        6         0         6         ++        1         0         1         0.078     0.000     1.111     
004179    AA        2         1         3         AG        7         1         8         GG        11        20        31        0.299     9.075     4.149     
004820    CC        24        22        46        CG        0         1         1         GG        0         0         0         0.000     0.011     0.005     
006505    AA        18        20        38        AC        4         0         4         CC        0         0         0         0.220     0.000     0.105     
007178    AA        20        23        43        AT        2         0         2         TT        0         0         0         0.050     0.000     0.023     
007741    --        1         0         1         +-        6         0         6         ++        17        23        40        0.240     0.000     1.527     
007830    AA        4         10        14        AG        6         12        18        GG        14        1         15        3.744     1.239     2.567     
008415    AA        8         10        18        AG        8         11        19        GG        8         1         9         2.667     0.889     0.915     
009489    AA        0         0         0         AG        1         0         1         GG        23        23        46        0.011     0.000     0.005     
009522    CC        23        23        46        CG        1         0         1         GG        0         0         0         0.011     0.000     0.005     
009778    CC        22        23        45        CT        2         0         2         TT        0         0         0         0.045     0.000     0.022     
010054    AA        22        9         31        AG        2         12        14        GG        0         2         2         0.045     0.517     0.068     
010090    AA        0         0         0         AG        1         0         1         GG        23        23        46        0.011     0.000     0.005     

Note:

AD: African_Descent
ED: European_Descent
Total: All_population
pop : population

Diallelic insertion/deletion polymorphisms are represented as:

+ : insertion allele
- : deletion allele

The + (inserted) allele for each site is listed below:

003789: gggc
003915: cgggcgg
007741: ct