Site Genotype1 AD-pop ED-pop Total-pop Genotype2 AD-pop ED-pop Total-pop Genotype3 AD-pop ED-pop Total-pop AD-chi2 ED-chi2 Total-chi2 000118 AA 0 0 0 AG 3 0 3 GG 15 19 34 0.149 0.000 0.066 000444 AA 10 17 27 AT 9 5 14 TT 0 0 0 1.830 0.362 1.738 000695 GG 21 23 44 GT 1 0 1 TT 0 0 0 0.012 0.000 0.006 001041 -- 0 0 0 +- 0 3 3 ++ 23 18 41 0.000 0.124 0.055 001059 AA 0 0 0 AG 3 0 3 GG 20 18 38 0.112 0.000 0.059 001174 AA 22 23 45 AC 1 0 1 CC 0 0 0 0.011 0.000 0.006 001237 CC 22 8 30 CG 2 9 11 GG 0 6 6 0.045 1.028 6.324 001239 CC 13 8 21 CT 9 11 20 TT 2 4 6 0.061 0.004 0.129 001615 CC 0 0 0 CG 1 0 1 GG 23 23 46 0.011 0.000 0.005 002153 CC 23 20 43 CT 0 2 2 TT 0 0 0 0.000 0.050 0.023 003280 CC 11 19 30 CG 10 4 14 GG 2 0 2 0.017 0.209 0.050 003544 CC 2 13 15 CT 5 10 15 TT 17 0 17 2.400 1.775 6.110 003545 AA 19 18 37 AT 5 5 10 TT 0 0 0 0.324 0.342 0.666 003587 AA 0 1 1 AG 0 0 0 GG 23 22 45 0.000 23.000 46.000 003863 CC 0 0 0 CG 1 0 1 GG 23 22 45 0.011 0.000 0.006 003909 AA 0 0 0 AC 3 0 3 CC 21 22 43 0.107 0.000 0.052 003940 CC 24 19 43 CT 0 3 3 TT 0 0 0 0.000 0.118 0.052 003961 -- 1 9 10 +- 13 7 20 ++ 10 7 17 1.630 3.439 0.790 004180 CC 19 18 37 CT 2 0 2 TT 0 0 0 0.053 0.000 0.027 004309 CC 21 17 38 CT 0 2 2 TT 0 0 0 0.000 0.059 0.026 004612 CC 0 0 0 CT 5 0 5 TT 16 19 35 0.383 0.000 0.178 004873 CC 0 0 0 CT 2 0 2 TT 22 23 45 0.045 0.000 0.022 005082 -- 0 0 0 +- 1 0 1 ++ 23 22 45 0.011 0.000 0.006 005094 AA 0 0 0 AG 0 4 4 GG 23 19 42 0.000 0.209 0.095 005294 CC 0 0 0 CT 2 3 5 TT 22 20 42 0.045 0.112 0.148 005366 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 005460 AA 0 0 0 AG 5 0 5 GG 19 23 42 0.324 0.000 0.148 005475 -- 3 0 3 +- 9 3 12 ++ 12 20 32 0.389 0.112 1.447 005485 CC 0 0 0 CT 1 0 1 TT 20 23 43 0.012 0.000 0.006 005612 AA 4 20 24 AG 10 3 13 GG 5 0 5 0.059 0.112 2.064 005618 AA 5 0 5 AG 10 2 12 GG 4 21 25 0.059 0.048 2.861 005623 AA 0 11 11 AG 0 9 9 GG 19 3 22 0.000 0.277 12.241 005633 CC 0 0 0 CT 1 0 1 TT 18 23 41 0.014 0.000 0.006 005812 AA 0 10 10 AG 1 8 9 GG 18 5 23 0.014 1.675 11.621 005862 GG 6 1 7 GT 7 5 12 TT 6 17 23 1.316 0.571 4.617 006034 * 006166 AA 18 23 41 AG 1 0 1 GG 0 0 0 0.014 0.000 0.006 006343 CC 24 20 44 CT 0 1 1 TT 0 0 0 0.000 0.012 0.006 006502 CC 23 21 44 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 006561 AA 0 0 0 AC 1 0 1 CC 23 22 45 0.011 0.000 0.006 006640 CC 23 22 45 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 006671 AA 21 22 43 AT 3 0 3 TT 0 0 0 0.107 0.000 0.052 006702 AA 0 0 0 AC 1 0 1 CC 23 22 45 0.011 0.000 0.006 006718 AA 5 16 21 AG 9 6 15 GG 10 0 10 1.119 0.548 4.371 006924 CC 22 21 43 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 006946 CC 14 18 32 CT 6 3 9 TT 3 0 3 2.407 0.124 3.369 006984 AA 5 16 21 AG 8 5 13 GG 9 0 9 1.352 0.383 5.097 007994 AA 0 0 0 AG 1 0 1 GG 20 17 37 0.012 0.000 0.007 008145 CC 17 20 37 CT 0 1 1 TT 0 0 0 0.000 0.012 0.007 008178 CC 18 21 39 CT 1 0 1 TT 0 0 0 0.014 0.000 0.006 008197 CC 15 18 33 CT 3 3 6 TT 1 0 1 1.815 0.124 1.111 008270 AA 0 0 0 AG 2 0 2 GG 22 22 44 0.045 0.000 0.023 008359 CC 11 19 30 CT 10 2 12 TT 2 0 2 0.017 0.053 0.306 008903 CC 4 20 24 CT 5 2 7 TT 11 0 11 3.701 0.050 16.741 009206 AA 21 19 40 AG 0 3 3 GG 0 0 0 0.000 0.118 0.056 009281 CC 5 18 23 CT 7 2 9 TT 9 0 9 1.995 0.055 10.375 009497 CC 16 2 18 CT 6 6 12 TT 2 14 16 1.407 1.099 10.478 009622 -- 0 0 0 +- 1 0 1 ++ 23 22 45 0.011 0.000 0.006 009647 -- 0 0 0 +- 1 0 1 ++ 22 22 44 0.011 0.000 0.006 009665 AA 3 15 18 AC 8 5 13 CC 11 2 13 0.577 2.001 7.088 009979 AA 8 0 8 AT 10 3 13 TT 6 20 26 0.621 0.112 5.814 010059 * 010389 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 011490 AA 1 0 1 AG 7 2 9 GG 16 17 33 0.044 0.059 0.164 011818 CC 23 22 45 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 012247 CC 22 21 43 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 012285 AA 0 0 0 AG 0 2 2 GG 21 19 40 0.000 0.053 0.025 012384 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 012489 CC 0 0 0 CG 3 0 3 GG 20 22 42 0.112 0.000 0.054 012621 CC 21 21 42 CG 1 0 1 GG 0 0 0 0.012 0.000 0.006 012632 AA 21 21 42 AG 1 0 1 GG 0 0 0 0.012 0.000 0.006 012773 -- 0 0 0 +- 1 0 1 ++ 20 21 41 0.012 0.000 0.006 012913 -- 1 1 2 +- 6 7 13 ++ 17 15 32 0.240 0.025 0.208 013030 AA 0 0 0 AG 2 0 2 GG 22 23 45 0.045 0.000 0.022 013252 AA 23 21 44 AG 0 1 1 GG 0 0 0 0.000 0.012 0.006 013805 -- 7 20 27 +- 14 3 17 ++ 3 0 3 0.960 0.112 0.022 014106 AA 0 0 0 AG 1 0 1 GG 22 23 45 0.011 0.000 0.006 014145 CC 23 22 45 CT 0 1 1 TT 0 0 0 0.000 0.011 0.006 014256 CC 0 0 0 CG 0 1 1 GG 24 22 46 0.000 0.011 0.005 014269 CC 13 0 13 CT 8 3 11 TT 3 20 23 0.897 0.112 12.211 014322 CC 23 3 26 CG 1 8 9 GG 0 12 12 0.011 0.733 15.796 014389 AA 7 20 27 AG 14 3 17 GG 3 0 3 0.960 0.112 0.022 014645 CC 10 20 30 CT 9 3 12 TT 3 0 3 0.177 0.112 1.250 014805 AA 17 21 38 AG 2 0 2 GG 0 0 0 0.059 0.000 0.026 015078 AA 0 0 0 AC 0 1 1 CC 23 22 45 0.000 0.011 0.006 016173 AA 21 23 44 AG 3 0 3 GG 0 0 0 0.107 0.000 0.051 016352 AA 0 0 0 AG 1 0 1 GG 23 22 45 0.011 0.000 0.006 016555 -- 0 0 0 +- 1 0 1 ++ 23 21 44 0.011 0.000 0.006 016693 CC 11 22 33 CT 12 0 12 TT 1 0 1 1.059 0.000 0.006 017287 CC 4 20 24 CT 9 3 12 TT 10 0 10 0.591 0.112 8.309 017316 -- 19 23 42 +- 4 0 4 ++ 1 0 1 1.361 0.000 3.895 017453 CC 3 20 23 CG 9 3 12 GG 11 0 11 0.277 0.112 8.912 Note: AD: African_Descent ED: European_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 001041: C 003961: c 005082: g 005475: C 009622: g 009647: agaattg 012773: g 012913: g 013805: AGGGG 016555: GAAG 017316: TGGCATCTGGAGAAGCCTGTTCATTCCA Tri-allelic sites: Site Genotype AD-pop ED-pop Total-pop 006034 AA 0 0 0 006034 AG 1 0 1 006034 AT 0 0 0 006034 GG 12 18 30 006034 GT 5 5 10 006034 TT 1 0 1 010059 CC 5 19 24 010059 CG 10 3 13 010059 CT 1 0 1 010059 GG 8 0 8 010059 GT 0 0 0 010059 TT 0 0 0