Site CDNA-Pos Description Allele1 AD-freq ED-freq Total-freq Allele2 AD-freq ED-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 000092 00000 ------------ C 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 000157 00000 ------------ G 0.98 0.96 0.97 A 0.02 0.04 0.03 0000 --- --- --- --- 000186 00000 ------------ G 0.57 0.72 0.65 C 0.43 0.28 0.35 0000 --- --- --- --- 000300 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 000321 00000 ------------ T 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 000617 00000 ------------ A 0.88 0.80 0.84 G 0.12 0.20 0.16 0000 --- --- --- --- 000634 00000 ------------ - 0.89 0.80 0.84 + 0.11 0.20 0.16 0000 --- --- --- --- 000676 00000 ------------ C 0.89 0.80 0.85 A 0.11 0.20 0.15 0000 --- --- --- --- 000733 00000 ------------ T 0.83 0.83 0.83 C 0.17 0.17 0.17 0000 --- --- --- --- 000749 00000 ------------ A 0.93 1.00 0.97 C 0.07 0.00 0.03 0000 --- --- --- --- 000795 00000 ------------ A 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 001013 00000 ------------ C 0.88 1.00 0.94 T 0.12 0.00 0.06 0000 --- --- --- --- 001344 00002 5' UTR C 0.95 0.93 0.94 A 0.05 0.07 0.06 0000 --- --- --- --- 001447 00000 ------------ C 0.93 1.00 0.96 T 0.07 0.00 0.04 0000 --- --- --- --- 001777 00000 ------------ C 0.86 1.00 0.93 T 0.14 0.00 0.07 0000 --- --- --- --- 001918 00000 ------------ T 1.00 0.88 0.95 G 0.00 0.12 0.05 0000 --- --- --- --- 002098 00000 ------------ G 1.00 0.94 0.97 A 0.00 0.06 0.03 0000 --- --- --- --- 002255 00000 ------------ G 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 002257 00000 ------------ G 0.89 0.93 0.91 A 0.11 0.07 0.09 0000 --- --- --- --- 002505 00000 ------------ A 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 003124 00000 ------------ G 0.89 1.00 0.95 A 0.11 0.00 0.05 0000 --- --- --- --- 003470 00000 ------------ T 1.00 0.95 0.97 C 0.00 0.05 0.03 0000 --- --- --- --- 003634 00000 ------------ A 0.85 0.57 0.69 G 0.15 0.43 0.31 0000 --- --- --- --- 003690 00000 ------------ C 0.89 0.93 0.91 T 0.11 0.07 0.09 0000 --- --- --- --- 003719 00000 ------------ C 0.89 0.93 0.91 G 0.11 0.07 0.09 0000 --- --- --- --- 003819 00000 ------------ A 0.97 0.93 0.95 G 0.03 0.07 0.05 0000 --- --- --- --- 003835 00000 ------------ T 0.97 0.95 0.96 G 0.03 0.05 0.04 0000 --- --- --- --- 003910 00000 ------------ T 0.94 1.00 0.97 C 0.06 0.00 0.03 0000 --- --- --- --- 004252 00000 ------------ A 0.75 0.91 0.83 G 0.25 0.09 0.17 0000 --- --- --- --- 004590 00000 ------------ - 0.02 0.07 0.04 + 0.98 0.93 0.96 0000 --- --- --- --- 004709 00353 NON-SYN G 1.00 0.98 0.99 A 0.00 0.02 0.01 0107 AGT AAT SER(S) ASN(N) 004886 00000 ------------ A 1.00 0.98 0.99 C 0.00 0.02 0.01 0000 --- --- --- --- 004891 00000 ------------ C 0.85 1.00 0.92 G 0.15 0.00 0.08 0000 --- --- --- --- 004892 00000 ------------ G 0.85 1.00 0.92 T 0.15 0.00 0.08 0000 --- --- --- --- 004900 00000 ------------ G 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 004922 00000 ------------ G 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 005011 00000 ------------ C 0.95 1.00 0.98 A 0.05 0.00 0.02 0000 --- --- --- --- 006623 00000 ------------ T 0.62 0.72 0.67 C 0.38 0.28 0.33 0000 --- --- --- --- 006781* 006804 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 006861 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 006900 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 007183 00000 ------------ A 0.95 0.93 0.94 T 0.05 0.07 0.06 0000 --- --- --- --- 007307 00000 ------------ - 0.98 1.00 0.99 + 0.02 0.00 0.01 0000 --- --- --- --- 007333 00000 ------------ A 0.94 0.93 0.93 G 0.06 0.07 0.07 0000 --- --- --- --- 007381 00000 ------------ A 0.82 0.93 0.88 C 0.17 0.07 0.12 0000 --- --- --- --- 007394 00000 ------------ - 0.69 0.48 0.59 + 0.31 0.52 0.41 0000 --- --- --- --- 007395 00000 ------------ C 0.87 1.00 0.93 A 0.13 0.00 0.07 0000 --- --- --- --- 007668 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 007673 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 007677 00000 ------------ C 0.96 0.93 0.95 T 0.04 0.07 0.05 0000 --- --- --- --- 007859 00000 ------------ A 0.57 0.72 0.65 G 0.43 0.28 0.35 0000 --- --- --- --- 007906 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 007976 00000 ------------ T 0.88 1.00 0.94 A 0.12 0.00 0.06 0000 --- --- --- --- 008234 00000 ------------ G 0.80 0.93 0.87 A 0.20 0.07 0.13 0000 --- --- --- --- 008267 00000 ------------ G 0.59 0.72 0.66 T 0.41 0.28 0.34 0000 --- --- --- --- 008415 00000 ------------ T 0.70 0.50 0.60 C 0.30 0.50 0.40 0000 --- --- --- --- 008609 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 008640 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 008749 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 008772 00000 ------------ T 0.89 1.00 0.95 C 0.11 0.00 0.05 0000 --- --- --- --- 008896 00000 ------------ T 0.89 0.54 0.72 G 0.11 0.46 0.28 0000 --- --- --- --- 009042 00000 ------------ A 0.86 1.00 0.93 G 0.14 0.00 0.07 0000 --- --- --- --- 009061 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 009572 00000 ------------ G 0.97 1.00 0.99 A 0.03 0.00 0.01 0000 --- --- --- --- 010059 00494 NON-SYN G 0.95 0.93 0.94 A 0.05 0.07 0.06 0154 CGT CAT ARG(R) HIS(H) 010075 00510 SYNON A 0.98 1.00 0.99 G 0.02 0.00 0.01 0159 TCA TCG SER(S) SER(S) 010230 00000 ------------ T 0.91 0.57 0.74 C 0.09 0.43 0.26 0000 --- --- --- --- 010283 00000 ------------ G 0.89 1.00 0.94 A 0.11 0.00 0.06 0000 --- --- --- --- 010979 00000 ------------ C 0.83 0.57 0.70 T 0.17 0.43 0.30 0000 --- --- --- --- 011029 00000 ------------ C 0.61 0.38 0.50 T 0.39 0.62 0.50 0000 --- --- --- --- 011251 00000 ------------ C 0.97 0.95 0.96 T 0.03 0.05 0.04 0000 --- --- --- --- 011303 00000 ------------ T 0.88 0.55 0.70 C 0.12 0.45 0.30 0000 --- --- --- --- 011335 00000 ------------ - 1.00 0.98 0.99 + 0.00 0.02 0.01 0000 --- --- --- --- 011424 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 011477 00000 ------------ C 0.35 0.65 0.50 A 0.65 0.35 0.50 0000 --- --- --- --- 011622 00000 ------------ A 0.96 0.93 0.95 C 0.04 0.07 0.05 0000 --- --- --- --- 011636 00000 ------------ T 0.96 0.93 0.95 G 0.04 0.07 0.05 0000 --- --- --- --- 011746 00000 ------------ - 0.98 1.00 0.99 + 0.02 0.00 0.01 0000 --- --- --- --- 011789 00000 ------------ C 0.65 0.36 0.51 G 0.35 0.64 0.49 0000 --- --- --- --- 011820 00000 ------------ C 0.96 0.93 0.95 T 0.04 0.07 0.05 0000 --- --- --- --- 011890 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 011922 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 012608 00000 ------------ T 0.37 0.64 0.51 C 0.63 0.36 0.49 0000 --- --- --- --- 012774 00000 ------------ T 0.37 0.64 0.51 G 0.63 0.36 0.49 0000 --- --- --- --- 012948 00000 ------------ T 0.37 0.65 0.52 C 0.63 0.35 0.48 0000 --- --- --- --- 013060 00000 ------------ A 0.37 0.63 0.51 G 0.63 0.37 0.49 0000 --- --- --- --- 013745 00000 ------------ G 0.93 1.00 0.97 C 0.07 0.00 0.03 0000 --- --- --- --- 013755 00000 ------------ A 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 013774 00000 ------------ T 0.91 0.80 0.86 C 0.09 0.20 0.14 0000 --- --- --- --- 014206 00000 ------------ T 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 014232 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 014383 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 014413 00000 ------------ C 0.93 1.00 0.97 T 0.07 0.00 0.03 0000 --- --- --- --- 014502 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 014512 00000 ------------ G 0.50 0.70 0.60 A 0.50 0.30 0.40 0000 --- --- --- --- 014544 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 014636 00000 ------------ G 0.86 0.57 0.70 A 0.14 0.43 0.30 0000 --- --- --- --- 014657 00000 ------------ C 0.43 0.63 0.53 T 0.57 0.37 0.47 0000 --- --- --- --- 014705 00000 ------------ C 0.95 0.91 0.93 A 0.05 0.09 0.07 0000 --- --- --- --- 014905 00000 ------------ C 0.81 0.78 0.80 T 0.19 0.22 0.20 0000 --- --- --- --- 015320 00000 ------------ C 0.95 0.76 0.85 T 0.05 0.24 0.15 0000 --- --- --- --- 015741 00000 ------------ T 1.00 0.98 0.99 C 0.00 0.02 0.01 0000 --- --- --- --- 015985 00000 ------------ C 0.91 1.00 0.95 T 0.09 0.00 0.05 0000 --- --- --- --- 016121 00829 NON-SYN G 0.50 0.74 0.61 T 0.50 0.26 0.39 0266 GTA TTA VAL(V) LEU(L) 016350 00000 ------------ C 0.90 0.81 0.86 T 0.10 0.19 0.14 0000 --- --- --- --- 016411 00000 ------------ C 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 016412 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 016422 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 016475 00000 ------------ G 0.75 0.57 0.66 C 0.25 0.43 0.34 0000 --- --- --- --- 016552 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 016864 00000 ------------ G 0.77 0.57 0.67 T 0.23 0.43 0.33 0000 --- --- --- --- 017002 00000 ------------ G 0.90 1.00 0.95 A 0.10 0.00 0.05 0000 --- --- --- --- 017193 00000 ------------ T 0.89 0.80 0.85 G 0.11 0.20 0.15 0000 --- --- --- --- 017318 00000 ------------ T 0.93 1.00 0.97 G 0.07 0.00 0.03 0000 --- --- --- --- 017338 00000 ------------ C 0.75 0.55 0.65 A 0.25 0.45 0.35 0000 --- --- --- --- 017500 00000 ------------ G 0.89 1.00 0.94 A 0.11 0.00 0.06 0000 --- --- --- --- 017600 00000 ------------ C 0.73 0.55 0.64 G 0.27 0.45 0.36 0000 --- --- --- --- 018129 00000 ------------ C 0.97 1.00 0.99 T 0.03 0.00 0.01 0000 --- --- --- --- 018224 00000 ------------ G 0.65 0.89 0.77 T 0.35 0.11 0.23 0000 --- --- --- --- 018251 00000 ------------ G 0.97 1.00 0.99 A 0.03 0.00 0.01 0000 --- --- --- --- 018345 00000 ------------ G 0.97 1.00 0.99 A 0.03 0.00 0.01 0000 --- --- --- --- 018355 00000 ------------ C 0.95 1.00 0.97 T 0.05 0.00 0.03 0000 --- --- --- --- 018482 00000 ------------ T 0.82 0.55 0.68 C 0.18 0.45 0.32 0000 --- --- --- --- 018485 00000 ------------ A 0.94 1.00 0.97 G 0.06 0.00 0.03 0000 --- --- --- --- 018532 00000 ------------ T 1.00 0.97 0.99 C 0.00 0.03 0.01 0000 --- --- --- --- 018539 00000 ------------ - 0.16 0.00 0.07 + 0.84 1.00 0.93 0000 --- --- --- --- 018593 01037 NON-SYN G 1.00 0.98 0.99 C 0.00 0.02 0.01 0335 TGG TCG TRP(W) SER(S) 018648 01092 3' UTR T 0.82 0.52 0.67 C 0.18 0.48 0.33 0000 --- --- --- --- 018689 01133 3' UTR T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 018904 00000 ------------ G 0.98 0.98 0.98 A 0.02 0.02 0.02 0000 --- --- --- --- 019027 00000 ------------ A 0.98 0.98 0.98 G 0.02 0.02 0.02 0000 --- --- --- --- 019196 00000 ------------ C 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 019394 00000 ------------ C 0.92 1.00 0.96 T 0.08 0.00 0.04 0000 --- --- --- --- 019675 00000 ------------ - 0.57 0.57 0.57 + 0.43 0.43 0.43 0000 --- --- --- --- 019750 00000 ------------ G 0.90 0.86 0.88 A 0.10 0.14 0.12 0000 --- --- --- --- 019789 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 019803 00000 ------------ G 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 019936 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 020019 00000 ------------ - 0.69 0.57 0.63 + 0.31 0.43 0.37 0000 --- --- --- --- 020022 00000 ------------ T 0.96 1.00 0.98 G 0.04 0.00 0.02 0000 --- --- --- --- 020112 00000 ------------ T 0.96 0.93 0.95 C 0.04 0.07 0.05 0000 --- --- --- --- 020157 00000 ------------ T 0.90 0.83 0.86 G 0.10 0.17 0.14 0000 --- --- --- --- 020184 00000 ------------ A 0.71 0.57 0.64 T 0.29 0.43 0.36 0000 --- --- --- --- 020246 00000 ------------ T 0.97 0.88 0.92 C 0.03 0.12 0.08 0000 --- --- --- --- 020252 00000 ------------ C 0.94 1.00 0.97 T 0.06 0.00 0.03 0000 --- --- --- --- NOTE: AD-freq: African Descent frequency ED-freq: European Descent frequency NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 000634: T 004590: T 007307: G 007394: T 011335: T 011746: A 018539: T 019675: A 020019: C The following site(s) was observed to have three alleles. The frequency for each allele is given below: Site Allele1 AD-freq ED-freq Total-freq Allele2 AD-freq ED-freq Total-freq Allele3 AD-freq ED-freq Total-freq 006781 A 0.04 0.00 0.02 C 0.76 0.80 0.78 G 0.20 0.20 0.20