APOBEC3G Color FASTA
The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.
*Display courtesy of
GeneSNPs
C
C
C
T
A
A
T
T
C
C
T
A
C
T
T
T
C
C
C
T
G
A
G
C
A
A
G
A
G
A
C
T
G
A
T
T
T
C
T
G
T
A
A
C
T
T
T
C
T
C
50 |
REPEAT
C
A
G
A
T
C
A
G
A
A
G
A
C
C
A
C
A
G
A
C
C
A
T
G
G
A
C
T
A
G
T
T
C
T
G
A
A
T
G
G
T
T
T
A
C
A
G
A
C
C
100
T
G
G
C
A
A
A
T
T
T
T
G
G
T
G
C
C
T
T
C
A
T
G
T
C
C
T
G
A
A
A
G
G
A
C
C
T
T
T
T
G
A
C
A
T
A
C
A
G
G
150
C
T
T
A
A
T
T
G
T
G
G
T
A
C
A
T
T
T
A
A
A
T
G
T
T
G
T
C
T
C
C
A
C
C
G
C
A
A
T
G
T
G
A
G
G
A
C
G
G
A
200
T
A
A
T
A
CAGCT GCTTTTTTTT TTTTTTTTTT TTAATAGA
T
T
G
T
T
G
T
T
T
G
T
T
250 |
REPEAT
T
G
T
T
T
T
T
T
G
T
T
T
T
G
A
G
A
T
G
G
A
G
T
C
T
C
A
C
T
C
T
G
T
C
T
C
C
C
A
G
G
C
T
G
G
A
G
G
G
C
300
A
G
T
G
G
T
G
C
G
A
T
C
T
C
G
G
C
C
C
A
G
T
G
C
A
A
C
C
T
C
T
G
C
C
T
C
C
C
G
G
G
T
T
C
A
A
C
T
G
A
350 |
var(310):[T:0.08]
|
var(321):[C:0.01]
T
T
C
T
C
C
T
G
C
C
T
C
A
G
C
C
T
C
C
C
A
A
G
T
A
G
C
T
G
G
G
A
T
T
T
C
A
G
G
C
A
C
A
T
G
G
C
A
C
C
400
A
C
G
T
C
C
G
G
C
C
A
A
C
T
T
T
G
G
T
A
G
T
T
T
T
A
G
T
A
G
A
G
A
C
G
A
G
G
T
C
T
C
A
C
C
A
T
G
T
T
450
G
G
C
C
A
G
G
T
T
G
G
T
C
T
C
G
A
A
C
T
C
C
T
G
A
C
T
G
T
C
A
T
A
C
A
T
G
T
C
C
A
T
A
T
A
G
A
A
G
A
500 |
REPEAT
C
C
A
C
C
T
A
A
A
C
A
G
G
C
T
T
T
G
T
G
T
A
A
G
C
A
A
T
A
A
T
G
C
C
A
T
T
T
A
T
T
C
A
C
T
T
G
G
G
T
550
G
C
A
A
C
T
G
G
G
C
T
G
A
G
T
C
T
G
A
A
A
A
G
A
G
A
G
T
C
A
G
C
G
A
A
G
G
G
A
G
A
T
A
G
G
A
G
A
G
G
600
G
G
C
A
G
C
T
T
T
A
T
A
G
G
A
C
T
T
G
G
G
T
A
G
G
C
G
G
T
G
G
A
A
A
G
T
T
A
C
A
G
T
C
A
A
A
G
G
C
G
650
G
T
C
A
T
C
T
G
T
T
G
T
C
A
G
C
A
G
G
G
G
A
G
G
G
G
G
T
C
A
C
A
A
G
G
T
G
C
A
T
G
G
T
G
G
G
A
G
A
C
700 |
var(673):[A:0.30]
C
A
T
G
A
G
A
C
C
C
A
T
T
G
T
C
C
A
G
A
A
G
A
A
G
A
A
T
G
T
C
A
T
A
A
G
G
T
C
G
A
T
T
G
A
T
C
A
G
T
750
T
A
G
G
G
T
A
G
G
G
C
A
G
G
A
A
C
A
A
G
T
C
C
T
A
A
T
G
G
T
G
G
A
A
T
G
T
C
T
T
A
A
G
G
T
T
G
G
T
T
800
A
A
T
C
A
G
T
T
A
A
G
G
G
A
G
A
A
A
C
T
G
G
C
T
G
T
T
T
C
A
C
T
T
C
T
T
T
T
G
T
G
T
T
T
T
T
T
T
G
G
850
C
T
G
T
T
C
C
A
G
A
C
T
T
C
T
T
G
G
C
T
G
C
T
G
C
A
G
G
C
C
A
T
C
T
G
G
A
T
G
T
A
T
A
T
G
T
G
C
A
G
900
T
T
C
A
C
A
G
G
G
G
T
C
A
C
A
A
T
G
G
C
T
T
A
G
C
T
C
T
G
G
C
T
C
A
G
C
G
G
C
C
T
G
A
C
A
C
T
G
A
C
950 |
NOT SCANNED
|
REPEAT
C
T
C
A
G
A
T
G
A
T
C
C
A
C
C
T
G
C
C
T
C
G
G
C
C
T
C
C
C
A
A
A
A
T
G
C
T
G
G
G
A
T
T
A
C
A
G
G
T
G
1000
T
G
A
G
C
C
A
C
T
G
T
G
C
C
C
G
C
C
T
G
G
G
A
T
C
A
T
A
T
G
T
T
A
C
A
C
G
C
A
T
G
T
T
T
G
T
T
C
A
A
1050 |
REPEAT
T
A
A
G
C
A
T
G
G
A
G
T
G
C
A
G
C
C
A
C
C
C
A
C
A
T
G
A
A
T
A
T
T
C
A
T
A
G
C
T
C
C
T
C
C
T
G
T
A
G
1100
C
C
T
G
T
T
C
A
A
T
A
T
G
T
A
T
G
T
T
T
A
G
C
T
A
A
C
C
C
C
T
T
C
A
G
C
A
T
A
A
A
G
C
T
C
C
T
G
C
C
1150
C
C
A
A
C
C
C
C
T
C
C
T
G
C
T
T
C
T
A
A
A
T
G
T
C
T
G
T
C
T
C
T
G
G
T
G
T
T
A
A
C
C
A
G
A
G
G
C
T
G
1200
C
T
C
T
T
C
C
C
A
G
G
C
T
G
C
T
G
G
A
T
G
G
C
T
A
C
C
T
T
G
C
A
G
G
C
T
G
T
C
A
C
C
C
T
T
A
A
C
A
A
1250
G
A
A
A
T
A
A
A
G
T
G
T
C
A
T
T
T
G
C
A
A
A
T
G
C
A
T
C
C
C
T
T
G
T
G
T
A
A
T
T
T
GTAGGTCAC
1300
C
G
CGCCATGG GAACACGCTA CCA
C
GGGAAG GGAGCTGTGA GACGCGCAGG
1350 |
var(1302):[A:0.02]
|
var(1324):[G:0.06]
GAGGCTCCAG ACAGGCTGGC CTGGGACACC AGCCGCTGCC CTTCCATAAC
1400
ATGGGGACAA GAGAGGGCAA AAGTTCAGCC CACCACGGAG GATCTCCGGG
1450
CAGGAGATGG GGAAGAAGGA GAAGCAGGAA GGAAAGAGCT CAGTGTGGGG
1500
GCGCGCATGG CATCCCGGTG GGACATCTGA GGCCCACACC CACCTGCTGT
1550
CCCTCCCTCC CACGGTGGCC TCCGAGGGTG ACGGCCTGGG GGGAGGCAGA
1600
CGCCTGGCCA TTTACTCTCC CTCCCTGTCC CCATGGCCGC TGGGTGGGGG
1650
CCGTCTCTGG GATGATCCCC GAGGGCAGGA TCCGGGAGTC CCTGC
G
GAGG
1700 |
var(1696):[A:0.03]
CATCAGCCTG TCTGTCTTGA TGGTGGAG
A
G G
A
GGCTCCAG CTGGGCGGGA
1750 |
var(1729):[T:0.01]
|
var(1732):[C:0.01]
CCACCAGGGG AGGGGCTTGT GCTCTGCTGG CTCAGCCTGG TGTGGACCCA
1800
CCTC
G
CGGGC GCTGGCTGCA ATGACTTTCT CTTTCCCTTT GCAATTGCCT
1850 |
var(1805):[C:0.38]
TGGGTCCTGC CGCACAGAGC GGCCTGTCTT TATCAGAGGT CCCT
C
T
G
C
C
A
1900 | Exon 1 |
UTR
G
G
G
G
G
A
G
G
G
C
C
C
C
A
G
A
G
A
A
A
A
C
C
A
G
A
A
A
G
A
G
G
G
T
G
A
G
A
G
A
C
T
G
A
G
G
A
A
G
A
1950
T
A
A
A
G
C
G
T
C
C
C
A
G
G
G
C
C
T
C
C
T
A
C
A
C
C
A
G
C
G
C
C
T
G
A
G
C
A
G
G
A
A
G
C
G
G
G
A
G
G
2000
G
G
C
C
A
T
G
A
C
T
A
C
G
A
G
G
C
C
C
T
G
G
G
A
G
G
T
C
A
C
T
T
T
A
G
G
G
A
G
G
G
C
T
G
T
C
C
T
A
A
2050
A
A
C
C
A
G
A
A
G
C
T
T
G
G
A
G
C
A
G
A
A
A
G
T
G
A
A
A
C
C
C
T
G
G
T
G
C
T
C
C
A
G
A
C
A
A
A
G
A
T
2100
C
T
T
A
G
T
C
G
G
G
A
C
T
A
G
C
C
G
G
C
C
A
A
G
G
A
T
G
A
A
G
C
C
T
C
A
C
T
T
C
A
G
GTACCGCT
2150
M K P H F R 6
GCCCGCTCTA CCCACTGGGC CCCTCTGCTG CCCCTTCTTG CCTGGTGGCT
2200
CTGCTGGGCG TCAGCCCTGG CCTTCCCCTG CCCCAGCCCC AGCCCT
G
GGC
2250 |
var(2247):[C:0.01]
TCCCTCCCCT CTGACTCCCC TGCACCCCCT ACTCCCAGCC AGGCTCCTTG
2300
CCCTGCTGTG TTGTCGCCCC ACTGCTGCTT CTGAATGGGC CGCCTCCCCC
2350
ATCTGTCCCA GCCCAGGTCC CCTGCTGAGA CTCTCCC
C
TG AAAGTCATGG
2400 |
var(2388):[T:0.01]
CTGGGGTGGT GCTCCCGGCC CTGGGAGGGT GCTCCCTCTG TGTG
C
TTCCC
2450 |
var(2445):[G:0.07]
GCCATTCCTG AACTCTGGAA CTGGGAGAAT TGAACCAAAG GATGAGTAGA
2500
GCAAGGTGGA ATTTTGTTCA CAGGGCTTTG ATGGATTTTC TGTAAGATTT
2550
ACTTTGCTTA AATACCAAGT CTTAGGAGAG GGTGTGGGGA GGGAATGGTC
2600
TCTGAAGCAC AGGATAAATC ATGTCTTCCA AGGATGTCTC CACTGTGGGC
2650
AGAGGAGGAT GCAGATGACC CCAAACACAC GCTCCTCCTC CACTATCAGC
2700
ATTCACTGTT TATAAATGAC ACCAGTAACA TGGAATATAG T
G
G
C
C
G
G
G
T
G
2750 |
REPEAT
C
G
G
T
G
G
C
T
C
A
C
A
C
C
T
G
T
C
A
T
C
C
C
A
G
C
A
C
T
T
T
G
G
G
A
G
G
C
T
G
A
G
G
T
G
G
G
C
G
G
2800 |
var(2751):[G:0.04]
A
T
C
G
C
C
T
G
C
G
G
T
C
A
G
G
A
G
T
T
C
A
A
G
A
C
C
A
G
C
C
T
G
A
C
C
A
G
C
A
T
G
G
A
T
A
A
A
C
C
2850
C
T
G
T
C
T
C
T
A
C
T
A
A
A
A
A
T
G
C
A
A
A
A
T
T
A
G
C
T
G
G
G
T
G
T
G
G
T
G
G
C
G
G
G
C
G
C
C
T
G
2900
T
A
A
T
C
G
C
A
G
C
T
A
C
T
T
G
G
G
A
G
T
C
T
G
A
G
A
C
A
G
G
A
G
A
A
T
C
C
A
T
T
G
A
A
C
C
C
A
G
G
2950
A
G
G
C
G
G
A
G
T
T
T
G
C
A
G
T
G
A
G
C
T
G
A
G
G
T
C
G
C
C
C
C
A
T
T
G
C
A
C
T
C
C
A
G
C
C
T
G
G
G
3000 |
var(2998):[C:0.01]
C
A
A
C
A
A
G
A
G
C
A
A
A
A
C
T
T
C
G
T
C
T
T
G
A
A
A
G
A
A
A
A
A
A
A
A
A
C
A
A
A
A
A
C
A
A
A
A
G
A
3050
A
A
A
AACATGG AATATATGGG AAAAAAACTC AATGATCAGG AGGAATGTTG
3100
TTATTTTAAA ATTTAGTAAG AAGAGAGCCC GGTCCCCAAT GGCTGCCTCC
3150
TGC
A
G
G
G
C
C
A
G
T
G
A
T
A
C
A
G
A
G
A
C
T
G
G
A
C
A
G
G
G
C
T
G
G
C
C
T
G
G
A
A
A
G
G
G
G
C
C
3200 |
NOT SCANNED
|
REPEAT
C
C
C
A
C
T
C
C
A
T
T
T
G
T
C
C
C
C
A
G
C
T
C
T
G
T
G
G
C
C
T
G
G
G
C
A
G
G
T
T
A
C
C
C
C
G
C
C
T
C
3250
T
C
T
G
C
G
C
G
T
C
T
G
G
C
C
C
C
T
C
C
T
C
T
G
T
A
A
G
A
C
G
G
G
A
A
T
G
G
C
C
C
C
T
G
C
C
A
G
C
C
3300
T
A
G
G
G
C
A
G
C
C
T
C
A
C
A
T
G
A
G
C
T
C
A
C
C
C
C
C
G
C
G
C
A
G
C
A
C
T
T
A
G
A
A
G
A
C
T
G
G
C
3350
C
T
G
G
G
C
C
T
C
A
G
A
A
T
T
C
G
G
T
T
C
T
A
C
C
A
T
G
A
T
T
T
A
A
C
A
A
T
A
A
T
A
A
T
A
T
A
C
A
G
3400
A
G
G
T
G
A
A
A
T
G
T
C
A
G
G
A
A
G
G
A
A
C
T
G
A
G
C
T
G
A
A
A
G
G
T
T
A
A
A
A
G
C
T
G
T
T
A
T
T
T
3450
T
G
G
G
G
T
G
A
A
G
A
G
T
T
T
T
A
T
T
C
T
G
T
C
T
C
T
C
T
C
T
C
T
C
T
T
T
T
T
T
T
T
T
G
A
G
A
C
G
G
3500 |
REPEAT
A
A
T
T
T
C
G
C
T
C
T
T
G
T
C
G
C
C
C
A
G
G
C
T
G
G
A
G
T
G
T
A
G
T
G
G
C
G
C
G
A
T
C
T
T
G
G
C
T
C
3550
A
C
T
A
C
A
G
T
C
T
C
C
G
C
C
GAAAT TCTCAGGGGA GGGGAGGGAT GGGGGAGGCC
3600
TAGAGCCGTC CAGGGGGCTG TGTTTAGTGG ACATCAGCCC GGAGGGCCCC
3650
CAGGAGTGCT CTCTACATTG GCTGGTTTCT CTCTTGTGTC TTCAG
A
A
A
C
A
3700 | Exon 2
N 7
C
A
G
T
G
G
A
G
C
G
A
A
T
G
T
A
T
C
G
A
G
A
C
A
C
A
T
T
C
T
C
C
T
A
C
A
A
C
T
T
T
T
A
T
A
A
T
A
G
A
3750
T V E R M Y R D T F S Y N F Y N R 24
C
C
C
A
T
C
C
T
T
T
C
T
C
G
T
C
G
G
A
A
T
A
C
C
G
T
C
T
G
G
C
T
G
T
G
C
T
A
C
G
A
A
G
T
G
A
A
A
A
C
3800
P I L S R R N T V W L C Y E V K T 41
A
A
A
G
G
G
T
C
C
C
T
C
A
A
G
G
C
C
C
C
C
T
T
T
G
G
A
C
G
C
A
A
A
G
A
T
C
T
T
T
C
G
A
G
G
C
C
A
G
G
3850 |
var(3819):[T:0.02]
K G P S R P P L D A K I F R G Q 57
TACCACCCGG ACTCCAATCA CTTTGCAGGC AGGAGCTAAG CCAGCTGGGA
3900
AAGCAAACCA CGCACTGATA AGTGAAGTGC CCGGCGGCGG GCTAT
C
CAGT
3950 |
var(3946):[T:0.01]
GTGTCCTTCT CTCCCACACT TTCCAAGTCC GTGGCCCTGA CCTTCCTGCT
4000
GGACCGTCCT GGGATCGGAT CGTGGAGGGG GTTTGCCTCT GCACAAAAGG
4050
CCTTGTGTTT CCGTTTTTC
T
T
T
T
C
T
T
T
T
C
T
T
T
T
T
T
C
T
T
T
T
T
T
T
T
T
T
T
T
G
A
4100 |
REPEAT
|
NOT SCANNED
G
A
C
A
G
A
G
T
T
T
C
A
C
T
C
T
T
G
T
T
G
C
T
C
A
G
G
C
T
G
G
A
G
T
G
C
A
A
T
G
A
C
G
C
G
A
T
C
T
C
4150
G
G
C
T
C
A
C
A
G
C
A
A
C
C
T
C
T
G
C
C
T
C
C
T
G
G
G
T
T
C
A
A
G
C
G
A
T
G
C
T
G
T
C
G
C
C
T
C
A
G
4200
A
C
T
C
G
C
A
A
G
T
A
G
C
T
G
C
G
A
T
T
A
C
A
G
G
T
G
C
C
C
A
C
C
A
C
C
A</