APOBEC3F Color FASTA
The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.
*Display courtesy of
GeneSNPs
CTTGTGTAAT TTTTAGGTCA CCGCGCCATG GGAACACGCT ACCAGGGGAA
50
GGGAGCTGTG AGACGCGCAG GGAGGCTCCA GACAGGCTGG CCTGGGACAC
100
CAGCCACTGC TCTTCCATGA CATGGGGACA AGAGGAGGCG AGAGCTCAGC
150
CCACCAGGGA GGAACTCCGG GCAGGAGATG GGGAAGAAGG AGAAGCAGGA
200
AGGAAAGAGC TCAGTGTGGG GGCGCGCATG GCATCCCGGT GGGACATCTG
250
AGGCCCACAC CCACCTGCTG TCCCTCCCTC CCACGGTGGC C
T
CCGAGGGT
300 |
var(292):[A:0.01]
GAAGGCCTG
G
GGAGAGGCAG ACACCTGGCC CTTTACTCTC CCTCCCTGTC
350 |
var(310):[C:0.01]
CCCATGGCCG CTGGGTGGGG GCCGTCTCTG GGATGATCCC CGAGGGCAGG
400
ATCCGGGAGT CCCTGC
G
GAG G
C
ATCAGCCT GTCTGTCTTG ATGGTGGAG
A
450 |
var(417):[A:0.02]
|
var(422):[A:0.01]
|
var(450):[T:0.01]
GG
A
GGCTCCA GCTGGGCGGG ACCACCAGGG GAGGGGCTTG TGCTCTGCTG
500 |
var(453):[C:0.01]
GCTCAGCCTG GTGTGGACCC ACCTC
C
CGGG CGCTGGCTGC AATGACTTTC
550 |
var(526):[G:0.46]
TCT
T
T
C
C
C
T
T
T
G
C
A
A
T
T
G
C
C
T
T
G
G
G
T
C
C
T
G
C
C
G
C
A
C
A
G
A
G
C
G
G
C
C
T
G
T
C
T
600 | Exon 1 |
UTR
T
T
A
T
C
A
G
A
G
G
T
C
C
C
T
C
T
G
C
C
A
G
G
G
G
G
A
G
G
G
C
C
C
C
A
G
A
G
A
A
A
A
C
C
A
G
A
A
A
G
650
A
G
G
G
T
G
A
G
A
G
A
C
T
G
A
G
G
A
A
G
A
T
A
A
A
G
C
G
T
C
C
C
A
G
G
G
C
C
T
C
C
T
A
C
A
C
C
A
G
C
700 |
var(677):[T:0.01]
G
C
C
T
G
A
G
C
A
G
G
A
A
G
G
G
G
G
A
G
G
G
G
C
C
A
T
G
A
C
T
A
C
G
A
G
G
C
C
C
T
G
G
G
A
G
G
T
C
A
750
C
T
T
T
A
G
G
G
A
G
G
G
C
T
G
T
C
C
T
G
A
A
A
C
C
T
G
G
A
G
C
C
T
G
G
A
G
C
A
G
A
A
A
G
T
G
A
A
A
C
800 |
var(757):[T:0.05]
|
var(773):[:0.01]
C
C
T
G
G
T
G
C
T
C
C
A
G
A
C
A
A
A
G
A
T
C
T
T
A
G
T
C
G
G
G
A
C
T
A
G
C
C
G
G
C
C
A
A
G
G
A
T
G
A
850 |
var(831):[:0.01]
M 1
A
G
C
C
T
C
A
C
T
T
C
A
G
GTACCGC TGCCCGCTCT ACCCGCTGGG CCCCTCTGCT
900
K P H F R 6
GCCCCTTCCT GCCTGGTGGC TCTGCTGGGC GTCAGCC
C
TG GCCTCCCCCT
950 |
var(938):[T:0.01]
GCCCCAGCCC CAGCCCTGGG CTCCCTCCCC TCTGGCTCCC CTGCCCCCGC
1000
CACTCCCAGC CAGGCTCTTT TTCCTGCTCT GTGGTTGCCC CACTGCTGCT
1050
TCTGAATAGG CCGCTTCCCC ACCTGCCCCA GCCCAGGTGC CCTGCTGAGA
1100
CTCTCCCCCG CCACCGAAAG TCATGGCAGG GCTGG
T
G
C
T
C
C
C
G
G
C
C
C
T
G
G
1150 |
NOT SCANNED
G
A
G
G
G
T
G
C
T
C
C
C
T
C
T
G
T
G
T
T
C
T
T
T
C
C
G
C
C
A
T
T
C
C
T
G
A
A
C
T
C
T
G
G
A
A
C
T
G
G
1200
G
A
G
A
A
T
T
G
A
A
C
C
A
A
A
G
G
A
T
G
A
T
T
A
G
A
G
C
A
A
T
G
T
G
G
A
A
T
T
T
T
G
T
T
C
A
C
A
G
T
1250
G
C
T
T
T
G
A
T
G
G
A
T
T
T
T
C
T
G
T
A
A
C
A
T
T
T
A
C
T
T
T
G
C
T
T
A
A
A
T
A
G
C
A
A
G
T
C
T
T
A
1300
G
G
A
G
A
G
G
G
T
G
T
G
G
G
G
A
G
G
G
A
A
T
G
G
T
C
T
C
T
G
A
A
G
C
A
C
A
A
G
A
T
A
A
A
T
C
G
T
A
T
1350
C
T
T
C
C
A
A
G
G
A
T
G
T
C
T
C
C
A
C
T
G
T
G
G
G
C
A
G
A
G
G
A
G
G
A
T
G
C
A
G
A
T
G
A
C
C
C
C
A
A
1400
A
C
A
C
A
C
G
C
T
C
C
T
C
C
T
C
C
A
C
T
A
T
C
A
G
C
A
T
T
C
A
C
T
G
T
T
T
A
T
A
A
A
T
G
A
C
A
C
G
A
1450
G
T
A
A
C
A
T
G
G
A
A
T
A
T
A
G
T
G
G
C
C
G
G
G
T
G
C
G
G
T
G
G
C
T
C
A
C
A
C
C
T
G
T
C
A
T
C
C
C
A
1500 |
REPEAT
G
C
A
C
T
T
T
G
G
T
A
G
G
C
T
G
A
G
G
T
G
G
G
T
G
G
A
T
T
G
C
C
T
G
A
G
G
T
C
G
G
G
A
G
T
T
C
G
A
G
1550
A
C
C
A
T
C
C
T
G
A
T
C
A
A
C
A
T
G
G
A
T
A
A
A
C
C
C
T
G
T
C
T
C
T
A
C
T
A
A
A
A
A
T
A
C
A
A
A
A
T
1600
T
A
G
C
C
G
G
G
T
G
T
G
G
T
G
G
C
G
G
G
C
G
C
C
T
A
T
A
A
T
C
C
A
G
C
T
A
C
T
C
C
A
C
A
G
G
C
T
G
A
1650
G
A
C
A
G
G
A
G
A
A
T
C
G
C
T
T
G
A
A
C
C
C
A
G
G
A
G
G
C
G
G
A
G
G
T
T
G
C
A
G
T
G
A
G
C
C
G
A
G
A
1700
T
C
G
C
C
C
C
A
T
C
G
C
A
C
T
C
C
A
G
C
C
T
G
G
G
C
A
A
C
A
A
G
A
G
C
C
A
A
A
T
T
T
C
G
T
C
T
C
A
A
1750
A
A
G
A
A
A
A
A
A
A
A
A
C
A
A
A
A
A
C
A
A
A
A
A
A
C
A
T
G
G
A
A
T
A
T
A
T
G
G
G
A
A
A
A
A
A
A
C
T
C
1800
A
A
T
G
A
T
C
A
G
G
A
G
A
A
A
T
G
C
T
A
T
T
A
T
T
T
T
A
A
A
A
TTTAGTAAG AAGAGAGTCT
1850
GGTCCCCAAT GGCTCCCTCC TGCAAGGCTG GTGA
C
A
C
A
G
A
G
A
C
T
G
G
A
C
A
G
1900 |
REPEAT
G
G
C
T
G
G
T
C
T
G
G
T
A
A
G
A
G
G
C
C
C
C
A
G
C
C
C
C
A
T
C
C
G
T
C
C
C
C
A
G
C
T
C
T
G
T
G
G
C
C
1950
T
G
G
G
C
A
G
G
T
T
A
C
C
C
C
A
T
C
T
C
T
C
T
G
C
G
C
C
T
C
T
G
G
C
A
C
C
T
C
C
T
C
T
G
T
A
A
G
A
T
2000
G
G
G
A
A
T
G
G
C
C
C
G
T
G
C
G
G
G
C
C
T
A
G
G
G
C
A
G
C
C
T
C
A
C
A
T
G
A
G
C
T
C
A
C
A
T
C
C
G
C
2050
G
C
A
G
C
A
C
T
T
A
G
A
A
G
A
G
T
G
G
C
C
T
G
G
GCCTCA GAATTCGGTT CTACCATGAT
2100
TTAACAATAG TAATATACAG AGGTGAAATG TCAGAAGGAA CTGGCTGAAA
2150
GGTTAAAATC TATTATTTTG GGGTGAATAG TTTTA
T
T
C
T
C
T
C
T
C
T
C
T
T
T
T
2200 |
REPEAT
|
var(2194):[T:0.11]
|
var(2196):[T:0.11]
|
var(2198):[C:0.06]
T
T
T
T
T
T
T
T
T
T
T
T
T
T
G
A
G
A
T
G
G
A
G
T
T
T
C
G
C
T
C
T
T
G
T
A
G
C
C
C
A
G
G
C
T
G
G
A
G
T
2250
G
C
A
G
T
G
G
C
A
C
G
A
T
C
T
C
G
G
C
T
C
A
C
T
A
C
A
A
C
C
T
C
C
G
C
C
T
C
C
C
A
G
G
T
T
C
A
A
G
C
2300 |
var(2283):[T:0.01]
G
A
T
T
C
T
C
C
T
G
C
C
T
C
A
G
C
C
T
C
C
A
C
A
G
T
G
G
C
T
G
G
G
A
T
T
A
C
A
G
G
C
A
C
C
C
A
C
T
A
2350
C
C
A
C
G
C
T
T
G
G
C
T
A
A
T
T
T
T
T
A
T
A
T
T
T
T
T
A
G
T
A
G
A
G
A
C
T
G
G
G
T
T
G
C
A
C
C
A
T
G
2400 |
var(2393):[T:0.45]
T
T
G
G
T
G
A
G
A
C
T
G
G
T
C
T
C
A
A
A
C
T
C
C
T
G
A
C
C
T
C
A
A
G
T
G
A
T
G
G
G
C
C
T
A
C
C
T
C
G
2450
G
C
C
T
C
C
C
A
A
A
G
T
G
C
T
G
G
G
A
T
T
A
C
A
G
G
C
A
T
G
A
G
C
C
A
T
A
A
T
G
T
C
C
A
G
C
C
AAG
2500
AACTTTGTTC TCTTTTGCAT TTTACTAATG CGTTGGAGA
G
TGGGTGGGAG
2550 |
var(2540):[A:0.33]
AAATACTGGG AAGGTGGGGA ATGTACTCCT GGAACGACCA GAGCTGGACC
2600
CTGAGCTGGA AGAGGTCAGC CTGCCCCTGC TGCCCATGCC AGCATCCCCT
2650
TTTCTTGCTC TCTCCCCGGT CTTCCTGCCT GGGAAGGAAG CAAAAATTCT
2700
CAGGGCTGTG GAGGGGTTGG GGAGGCCCAG AGCCATGCAG GGGGCTGTGT
2750
TTAGTGGACA TCAGCCCTGA GGGCTCCCGG GAGCGCTCTC TACATTGGCT
2800
GGTTTCTCTC TTGTGTCTTC AG
A
A
A
C
A
C
A
G
T
G
G
A
G
C
G
A
A
T
G
T
A
T
C
G
A
G
A
C
2850 | Exon 2
N T V E R M Y R D 15
A
C
A
T
T
C
T
C
C
T
A
C
A
A
C
T
T
T
T
A
T
A
A
T
A
G
A
C
C
C
A
T
C
C
T
T
T
C
T
C
G
T
C
G
G
A
A
T
A
C
2900
T F S Y N F Y N R P I L S R R N T 32
C
G
T
C
T
G
G
C
T
G
T
G
C
T
A
C
G
A
A
G
T
G
A
A
A
A
C
A
A
A
G
G
G
T
C
C
C
T
C
A
A
G
G
C
C
C
C
G
T
T
2950
V W L C Y E V K T K G P S R P R 48
T
G
G
A
C
G
C
A
A
A
G
A
T
C
T
T
T
C
G
A
G
G
C
C
A
G
GTAC CACCCGGACT TCAATCACTT
3000
L D A K I F R G Q 57
TGCAGGCAGG AGCTAAGCCA GCTGGGAAAG CAAACCACGC ACTGATAAGT
3050
GAAGTGCCCG GCGGCGGGCT ATCCAGTGTG TCCTTCTCTC CCACACTTTC
3100
CAAGTCCGTG GCCCTGACCT TCCTGCTGGA CCGTCCTGGG ATCGGATCGT
3150
GGAGGGGGTT TGCCTTTGCA CAAAAGGCCT TGTG
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
3200 |
REPEAT
|
var(3185):[G:0.19]
T
T
T
G
A
G
A
C
A
G
A
G
T
T
T
C
A
C
T
C
T
T
G
T
T
G
C
T
C
A
G
G
C
T
G
G
A
G
T
G
C
A
A
T
G
A
C
G
C
G
3250 |
NOT SCANNED
A
T
C
T
C
G
G
C
T
C
A
C
A
G
C
A
A
C
C
T
C
T
G
C
C
T
C
C
T
G
G
G
T
T
C
A
A
G
C
G
A
T
G
C
T
G
T
C
G
C
3300
C
T
A
A
G
A
C
T
C
C
C
G
A
G
T
A
G
C
T
G
G
G
A
T
T
A
C
A
G
G
T
G
C
C
C
A
C
C
A
C
C
A
C
G
C
C
C
A
G
C
3350
T
A
A
T
T
T
T
T
T
T
T
T
T
T
T
T
T
G
T
A
T
T
T
T
T
A
G
T
A
G
A
G
A
C
A
G
G
A
T
T
T
T
A
C
C
A
T
A
T
T
3400
C
A
C
C
A
G
G
C
T
G
G
T
C
T
C
G
A
A
C
T
T
C
T
G
A
C
C
T
C
A
G
G
T
G
A
T
C
C
A
C
C
T
G
C
C
T
C
G
G
C
3450
C
T
C
C
C
A
A
A
G
T
G
T
T
G
G
G
A
T
T
A
C
A
G
G
T
G
T
G
A
G
C
C
A
C
A
G
C
G
C
C
G
G
C
C
T
A
A
T
T
T
3500
T
A
A
T
A
T
T
T
A
A
T
T
A
A
T
C
C
A
A
T
G
T
G
G
C
T
A
A
C
A
T
A
T
T
A
C
T
T
C
A
A
C
A
T
T
A
A
T
T
A
3550
A
C
A
T
A
A
A
A
T
T
C
T
T
G
A
C
A
A
G
A
T
A
A
T
G
A
A
G
T
T
T
C
T
T
T
T
T
G
T
C
A
C
A
C
T
G
A
G
T
C
3600
T
T
T
G
A
A
A
T
G
A
G
C
T
G
T
G
T
A
G
G
C
C
A
C
G
C
T
T
G
G
T
G
G
G
T
G
G
C
T
C
G
C
G
C
C
T
G
T
A
A
3650 |
REPEAT
T
C
C
C
A
G
C
A
C
T
T
T
G
G
G
A
G
G
C
C
G
A
G
G
T
G
G
G
T
G
G
A
T
C
A
C
C
T
G
A
G
G
T
T
A
G
A
T
G
T
3700
T
T
G
A
A
A
A
C
C
A
G
C
T
T
G
G
C
C
A
A
C
A
T
G
G
T
G
A
A
A
T
C
C
C
G
T
C
T
C
T
A
C
T
A
A
A
A
A
T
A
3750
C
A
A
A
A
A
A
A
A
A
A
T
T
A
G
C
C
C
G
G
T
G
T
G
G
T
G
G
C
A
G
T
C
G
C
C
T
G
T
A
A
T
C
C
C
A
G
C
T
A
3800
C
T
T
G
G
G
A
G
G
C
T
G
A
G
G
C
A
G
G
A
G
A
A
C
C
G
C
T
T
G
A
A
C
C
C
A
T
G
A
G
G
C
A
G
A
G
G
T
T
G
3850
T
A
G
T
G
A
G
C
C
G
A
G