Site Genotype1 AD-pop ED-pop Total-pop Genotype2 AD-pop ED-pop Total-pop Genotype3 AD-pop ED-pop Total-pop AD-chi2 ED-chi2 chi2 000292 AA 0 0 0 AT 1 0 1 TT 19 21 40 0.000 0.000 0.006 000310 CC 0 0 0 CG 1 0 1 GG 19 22 41 0.000 0.000 0.006 000417 AA 0 0 0 AG 2 0 2 GG 18 21 39 0.000 0.000 0.026 000422 AA 0 0 0 AC 1 0 1 CC 19 21 40 0.000 0.000 0.006 000450 AA 19 21 40 AT 1 0 1 TT 0 0 0 0.000 0.000 0.006 000453 AA 19 21 40 AC 1 0 1 CC 0 0 0 0.000 0.000 0.006 000526 CC 7 5 12 CG 10 8 18 GG 2 7 9 0.000 0.737 0.199 000677 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.000 0.000 0.005 000757 GG 20 23 43 GT 3 0 3 TT 1 0 1 0.000 0.000 6.306 000773 ++ 23 23 46 +- 1 0 1 -- 0 0 0 0.000 0.000 0.005 000831 ++ 23 23 46 +- 1 0 1 -- 0 0 0 0.000 0.000 0.005 000938 CC 24 22 46 CT 0 1 1 TT 0 0 0 0.000 0.011 0.005 002194 CC 24 13 37 CT 0 10 10 TT 0 0 0 0.000 1.775 0.666 002196 CC 24 13 37 CT 0 10 10 TT 0 0 0 0.000 1.775 0.666 002198 CC 1 0 1 CT 3 0 3 TT 18 22 40 0.000 0.000 5.825 002283 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.000 0.000 0.005 002393 GG 8 7 15 GT 13 9 22 TT 3 7 10 0.000 1.087 0.133 002540 AA 1 7 8 AG 6 9 15 GG 17 7 24 0.000 1.087 3.633 003185 GG 0 0 0 GT 3 11 14 TT 10 12 22 0.000 2.272 2.098 004422 CC 8 6 14 CG 12 10 22 GG 3 7 10 0.000 0.381 0.060 004545 AA 0 0 0 AG 2 0 2 GG 21 23 44 0.000 0.000 0.023 004977 GG 11 8 19 GT 9 8 17 TT 2 7 9 0.000 2.112 1.895 005009 CC 17 23 40 CT 5 0 5 TT 0 0 0 0.000 0.000 0.156 005084 CC 3 7 10 CT 11 9 20 TT 8 7 15 0.000 1.087 0.450 005125 ++ 21 22 43 +- 1 1 2 -- 0 0 0 0.000 0.011 0.023 005132 CC 21 23 44 CT 1 0 1 TT 0 0 0 0.000 0.000 0.006 005264 CC 0 0 0 CG 2 0 2 GG 20 23 43 0.000 0.000 0.023 005394 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.000 0.000 0.005 005530 CC 22 23 45 CG 2 0 2 GG 0 0 0 0.000 0.000 0.022 005780 ++ 24 22 46 +- 0 1 1 -- 0 0 0 0.000 0.011 0.005 006179 AA 4 0 4 AT 9 1 10 TT 11 22 33 0.000 0.011 4.601 006262 CC 0 2 2 CG 1 8 9 GG 16 11 27 0.000 0.093 1.032 006361 AA 0 0 0 AG 0 2 2 GG 17 21 38 0.000 0.048 0.026 006703 CC 0 0 0 CT 3 0 3 TT 16 19 35 0.000 0.000 0.064 006897 AA 14 9 23 AC 5 6 11 CC 1 6 7 0.000 3.646 5.523 007048 AA 1 8 9 AC 12 7 19 CC 7 6 13 0.000 2.249 0.169 007202 CC 0 0 0 CT 1 0 1 TT 23 23 46 0.000 0.000 0.005 007284 CC 21 23 44 CT 2 0 2 TT 1 0 1 0.000 0.000 10.729 007409 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.000 0.000 0.005 007572 AA 0 0 0 AT 1 0 1 TT 23 23 46 0.000 0.000 0.005 007573 CC 0 0 0 CT 1 0 1 TT 23 23 46 0.000 0.000 0.005 007575 AA 23 23 46 AG 1 0 1 GG 0 0 0 0.000 0.000 0.005 007577 AA 23 23 46 AT 1 0 1 TT 0 0 0 0.000 0.000 0.005 008052 AA 0 0 0 AG 1 0 1 GG 22 21 43 0.000 0.000 0.006 008070 CC 0 2 2 CG 0 5 5 GG 23 14 37 0.000 1.802 6.392 008190 CC 20 19 39 CG 3 0 3 GG 0 0 0 0.000 0.000 0.058 008923 CC 10 19 29 CT 10 1 11 TT 4 0 4 0.000 0.013 3.012 008938 AA 0 0 0 AG 1 0 1 GG 23 20 43 0.000 0.000 0.006 009042 CC 7 7 14 CT 13 7 20 TT 4 8 12 0.000 2.888 0.763 009261 AA 1 7 8 AG 4 6 10 GG 17 9 26 0.000 4.455 9.073 009317 AA 1 0 1 AG 1 0 1 GG 22 23 45 0.000 0.000 20.206 009435 AA 1 6 7 AG 5 7 12 GG 18 8 26 0.000 2.249 5.543 009437 CC 24 22 46 CT 0 1 1 TT 0 0 0 0.000 0.011 0.005 009612 GG 24 22 46 GT 0 1 1 TT 0 0 0 0.000 0.011 0.005 009638 GG 0 0 0 GT 1 0 1 TT 23 23 46 0.000 0.000 0.005 009826 CC 7 7 14 CT 13 8 21 TT 4 8 12 0.000 2.112 0.516 009837 CC 4 8 12 CG 13 8 21 GG 7 7 14 0.000 2.112 0.516 009840 CC 4 8 12 CT 13 8 21 TT 7 7 14 0.000 2.112 0.516 009851 AA 4 8 12 AC 13 8 21 CC 7 7 14 0.000 2.112 0.516 009854 GG 4 8 12 GT 13 8 21 TT 7 7 14 0.000 2.112 0.516 009916 CC 6 11 17 CG 12 8 20 GG 6 4 10 0.000 1.252 0.790 010254 CC 0 0 0 CT 3 1 4 TT 19 21 40 0.000 0.012 0.100 010275 AA 0 0 0 AG 3 0 3 GG 19 22 41 0.000 0.000 0.055 010279 CC 19 22 41 CT 1 0 1 TT 2 0 2 0.000 0.000 27.318 010284 CC 19 22 41 CT 3 0 3 TT 0 0 0 0.000 0.000 0.055 010285 GG 0 0 0 GT 3 0 3 TT 19 22 41 0.000 0.000 0.055 010305 ++ 8 7 15 +- 13 8 21 -- 3 8 11 0.000 2.112 0.469 010335 AA 0 0 0 AT 2 0 2 TT 22 23 45 0.000 0.000 0.022 010854 AA 22 23 45 AC 2 0 2 CC 0 0 0 0.000 0.000 0.022 010875 CC 22 23 45 CT 2 0 2 TT 0 0 0 0.000 0.000 0.022 011151 CC 24 21 45 CT 0 2 2 TT 0 0 0 0.000 0.048 0.022 011152 AA 0 0 0 AG 3 0 3 GG 21 23 44 0.000 0.000 0.051 011164 AA 0 0 0 AG 2 0 2 GG 22 23 45 0.000 0.000 0.022 011300 CC 1 7 8 CT 5 7 12 TT 18 8 26 0.000 2.888 6.780 011651 CC 22 23 45 CT 2 0 2 TT 0 0 0 0.000 0.000 0.022 011668 CC 5 7 12 CG 13 8 21 GG 3 8 11 0.000 2.112 0.089 011720 AA 21 23 44 AG 1 0 1 GG 0 0 0 0.000 0.000 0.006 011821 AA 22 23 45 AG 2 0 2 GG 0 0 0 0.000 0.000 0.022 011832 AA 0 0 0 AC 1 0 1 CC 23 23 46 0.000 0.000 0.005 012157 AA 21 23 44 AG 3 0 3 GG 0 0 0 0.000 0.000 0.051 012218 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.000 0.000 0.005 012338 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.000 0.000 0.005 012347 AA 0 0 0 AG 0 5 5 GG 24 18 42 0.000 0.342 0.148 012593 AA 2 7 9 AC 6 7 13 CC 16 9 25 0.000 3.439 6.585 012607 AA 0 0 0 AT 0 1 1 TT 24 22 46 0.000 0.011 0.005 012632 CC 2 7 9 CT 6 7 13 TT 16 9 25 0.000 3.439 6.585 012875 AA 17 9 26 AT 5 7 12 TT 1 7 8 0.000 3.439 6.780 012877 AA 0 0 0 AT 2 0 2 TT 21 23 44 0.000 0.000 0.023 013385 GG 0 8 8 GT 6 8 14 TT 15 7 22 0.000 2.112 3.750 013537 CC 2 7 9 CT 6 7 13 TT 13 9 22 0.000 3.439 5.470 013702 AA 0 0 0 AT 2 0 2 TT 19 23 42 0.000 0.000 0.024 013740 CC 0 0 0 CT 3 0 3 TT 18 23 41 0.000 0.000 0.055 014682 AA 0 0 0 AG 2 0 2 GG 22 23 45 0.000 0.000 0.022 014775 CC 21 23 44 CT 3 0 3 TT 0 0 0 0.000 0.000 0.051 014897 AA 0 0 0 AG 3 0 3 GG 21 23 44 0.000 0.000 0.051 014966 GG 0 0 0 GT 0 3 3 TT 24 20 44 0.000 0.112 0.051 015309 ++ 1 8 9 +- 6 8 14 -- 17 7 24 0.000 2.112 5.328 Note: ED : European Descent AD : African Descent pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 000773: a 000831: g 005125: AG 005780: agccagaagctttgagcaacatccttcaaggccgac 010305: T 015309: ta