AGTRAP Color FASTA
The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.
*Display courtesy of GeneSNPs

CCTCAAGTGA TCCACCGGCC TCAGCCTCCC AAAGTGTTAG GATTACAGGC 50 | REPEAT
TTGAGCCACC GTGCCCGGCC TGTTTTTCAT TTTCTCCTTA CAAAGTGATC 100
ACAACTTTAT TATATACCTA AAGGCTTGGA TTAAATCCCT CTAGAATCTG 150
GAGTGTATGG GAAATATTTT TTAGAAGGAA ATTGATCAGG CTGCGCACTG 200 | REPEAT
TGGCTCACGC CTGAAATCCC AGCACTTTGG GAGGCCGAGG CGGGCAGATC 250 | var(209):[A:0.02]
ACCTGAGGTC AGGAGTTTGA GACCAGCCTG GCCAACGTGG CAAAACCCTA 300 | var(258):[A:0.01]
TCGCTACTAA AAATACAAAA ATCAGCCGGG CATGTTGGCA CCCACCTGTA 350
GTCTCAGCCA CTCAGGAGGC TGAGGCAGGA GAATCACTTA AACCCGGGAG 400
ACGGAGGTTG CAGTGAGCTG AGATCGCGCC ACTGCACTCC AGCCTGGGTG 450
ACAGAGCCAG ACTCCATCTC AAAAAAAAAA AAGATAATAA TAACATAATA 500
TTCTAATATT GACTGCTTAC TGAGAAATTA CTCTCTTCTA AGTACTTTAC 550
TAATAACAAT AATTAATTAC CAATAATGAA CTAATAATAA TAATAGCAAC 600
CAGTCCTAAA TCAAACTGGA TGTAGCCATT TGGCTGGTCT CTAATTTACC 650
CCTAGACTGG GGGGATCTGT GCCTCCTAAG AGGGCATTAA GTTAGGCCTA 700 | var(657):[G:0.20]
TGGGCCCTGC AGCCCTGCAA AACTCTCCTC ATCCATCCAG AGAAACCCTT 750
TCTTTGCATC TGGAGAGACT ATGGGTCTTG GTATTATCTA AGGACTCACC 800 | var(780):[A:0.05] | var(800):[A:0.01]
CAGGCAGTTT TGTAGGTTCC CACCTGGTTT CCCCCACCCT AGGAATAAGA 850
CCAAGTGCTC AGGTGTACCC TGAAGGTTTC CATACCTAGG TGACACTAAA 900
CAAAAGCTGG TGTTCTCTAA AGGAAAGTTG ATGTTAGGAA GGGACCTGGA 950
GGTAGAGCGG ATTAATGTTC TTGTTGCGGT GGGGGGATGT GGTGGTCAAC 1000
AATCTTTAAG GGAGGTGCCA GGTGAGGCAG GAGACAGCCC TTTCTTTCCT 1050 | var(1009):[G:0.02]
CATGTACAAT TGGGGGAGGA ATTTCTTATG GTTTTTCAGC TAGAGTTTTC 1100
TAAAACTTTT GGTATGCTGA TTAAAGTGGG CTCCCACCAA TTTGGCTCCT 1150
CAGGTGTTGC TTTTTGTTTG TTTGTTTTTC CCAGACAAGG TCTCACCCTG 1200 | REPEAT
TCGTCCAGGC TGGAGTGTAG TGGCGTGATC TCGGCTCACT GCAGCCTCCC 1250
CGGTTCAAGC AATTCTCGTG CCTCAGCCTC CTGAGTAGCT GGGACTGCAG 1300
GTGCACACCA CCATGCCCTG CTAATTTTGG TATTTTTAGT AGAGACGGGG 1350
TTTCACCATG TTGGCCAGGC TGGTCTCGAA CTACTGAGTT CAGGTGATCC 1400
ACCCTCCTTG GCCTCCCAAA GTGCTGGGAT AACAGGGGTG AGCCACTGCG 1450 | var(1431):[G:0.01]
CCCAGCCTCA TCTTGTGTTG GTAATAACAA TAGCTTGTGT GTCCTGCCCA 1500 | var(1472):[C:0.01]
TTTACTAAGT GCCGGGCACT GTTCTCTCCT AGAACAAACC GTAGTTAGAC 1550 | REPEAT
TCCTCTGAGT CCTCATCTTG ACTAGGCCTC GGCCTTGGAC CTCTGTGTCT 1600 | var(1581):[A:0.01]
TCCTGTCCTT GCTGGGCCTG AGCCTGCATA ATAAACCAGT TTCAGCAAGA 1650
GTCCTGCTAA GTTAGCAAGA ACTCCCCCAT CCTTGATGTC TCCTCCTAGG 1700
AATCTTCCAT TCCTGCTCCC TCATTCTGCT CTGGCTATAA ATCCCTCCTT 1750
GGTCCTTGTT GTATTCGGTG TTGAGCCCAA ACTCTCACTC CATGGCAATA 1800
ACCCTACAGC AAGTCTTGAA CAGTACTGGT TTAACAACAG TCCCAATAAC 1850 | var(1842):[G:0.02]
GTTTTCTTTA ACAACAGCAG TTAGCTCATT TAATCCTCAT AAGGATCATA 1900 | REPEAT
TGAGGTAGGT AGCCTAAATA GCCCATTTAC ACAGGGAAGT GGGAAGGAGA 1950
GAGGGTGCCC CCAAGGATGA GACACAAGCT GTTGCCACAT CAGCACTTTG 2000
CGCCTGGACG GTCCCCCAGT TGTCCTGGCT GCAGGCAGTC CGAACAGTCC 2050
GCTTCCTGGA ATATTAGCCA GGCAGGATAC GCCCTGGGCG ACAGAAACTC 2100
CAACTTTCGC CAGCGGCCCC CAAGTACTGC CTGGGCGGTG GCGGGAGTCT 2150 | var(2142):[T:0.01]
GGAGCTTGGC TGAAGGCGCG AGCTGCCGAC GCCGTCTCCT AGCAACCAAG 2200
CGGCGGTCAC GTGACCCGCT CCAGCCCGTT TCACGTGGTC TTGAGCTGCG 2250
CTGGGGTTGG AGTGGCCGCA ACGGGCGGGG CGGGGCGGGG CCGGGCAAGT 2300 | var(2287):[:0.99]
TTGTTCCCCG AGTTCGGAGC CTAGGAGCCC CCCGCGGCTG CGGCGCAGGT 2350 | Exon 1 | UTR
GCCCTCGGCC TGAGTCGGGA
TGGAGCTGCC TGCTGTGAAC CTGAAGGTGG 2400
                      M  E  L  P   A  V  N   L  K      9
CGACGGGCTG GGGGGAGGGT CCCCTTTGCG GGAGGAAGTG GGACATTTGC 2450
ATTTTCCCGG AAGGTGGGAG GAAGGACCGG AGTTTTGGGG AAAGAGGGAT 2500
GGTAGGGAGG AAGGGAAGGT ACAGACCCCA CGCAAGAAGG AGATGGGCAG 2550
GCAGGCCACA GCAGGGAGAG TGATCCAGGC ACAGGCCAGC AGGGCGACAC 2600
TGAGGGGCCG TGGGAGGTGG CAGCGGAGGG CAAGGGCCGC CCCCTCCCGG 2650
ACTCAGACCC TCCCAGCGGG CAGCGCCGGT CCCAGCATTG CTGTTGCCTG 2700
CACGCCCAGA ATTCCCCTGG AGGAGGAGGA AGGTGCGCGG GAGGGGCTTG 2750
TAGGCGGCTC ACCTCCCCCG CGCGGGGTCA GGGACTGGGC TTGCCCCCCG 2800
GGTCCCAGCA CCGTTTCAGG AGCCTCCTTG TTTGCTAAGT CGGGTTAAGG 2850
AAATCAGATG TTCCCAAGCA GTTGGTTTTA TAAAGTTTAC ACATCCAGCG 2900
CCCTTATTTC ATAATCAAGA AGCGCGAACT CCAACAGAAA TTACTTAAAA 2950
GCAGAAAACC CCAACTTTGT GCACTGGGGA AAACACTGCA GGGCTTCCTG 3000
TGGTGTCTTC ATTTCCCGAG CCGTGAGCTC AGTCCGGGTC TGGGTGCCAG 3050 | var(3040):[:0.11] | var(3041):[C:0.15]
CGGCTGTTCT TTTTCTCCCC GCCCAGCCCC GCCGCCCACG TGTCTGGGCT 3100
CCATTTGCAT TAGAGGGGCT AGGGGCTGTA GTTTTGGTCA GGAAGGTGTG 3150 | var(3128):[T:0.41] | var(3134):[C:0.05]
GACCTTGGAC CAAACCGGCC ATTTTGGGTC TTAGTGCAGC CTCCTTTGAG 3200
GCAATATCCA GGAATGTCCT CTTACTCATG AATGACAGAG CATTTAGCTC 3250
CCTGTTGGTG TCTGGGACTA AAGGAACCTG AGAAATAGAC GGTTACAAAA 3300 | var(3290):[T:0.33]
CAATGGCTTA ATACACTTTA TTATTACACA ACATCTGTGC TATGACTTGC 3350 | var(3338):[C:0.12]
TATAGGCATG TTTCCCTTCT TAATCATACT TGCTTCAGCA AACCTTCCTG 3400
AAGCTTCCAG TCAAAGGTGG TGGGGAGACA TGGCTGGAGC AAGGGAATGG 3450
GCTTGGATGG AACGTTCAGC TGGGAAGAAA TTTACGTGAC AGCAGCCGAG 3500
GCTTGTTGGT ATCAATATGC ACTCTATTCC AGGCAATGTG GGGTTAACAC 3550
CAACTGCCTT TTCTCTGATG AGGGATTTGC TTAAAATAAT TGCTGACAGA 3600
GGATCAGGTG AGGGCAGTGG GAGGGACAGA GCTCTAATTT ATGGGCTTCT 3650
GTGGTGTGCC AGGTTATTTA ATCAAGGCAG CCTTATGAGA AAGCTGATAT 3700 | REPEAT
GGTCATCTTT TTACAGATGA GCAAACTTCA GCTTAGACTG GGTAAATTGC 3750
CAAGGTCCCA CGGGGAGTAA GTGGCAATAT CAGGATTTGA ACCCATAGGG 3800
ATCAGACTCC AGGGCCAGGT CCTTTCTGGG GTACCAGCTT AGGGCTGACT 3850
TTAACGTTGG CTGTTTCTGT CCTTTGGGAG GGCTTAGTCT CTTTGGGGCT 3900 | var(3863):[A:0.01]
TTTTTTGAGC AACTTTTTGG GCCTGACAGG CTAAGAGCAT CCACAGGTAT 3950 | var(3930):[T:0.05]
GAGCTATGCT GGCTTTCGGT ACCCAGGATG AAAAGGCTGG TCCTCCCCTT 4000
GACTTGGCAA ACGAGACCCC AGTCTCCAAG GGTGTTAGCC GCTACCAGTC 4050
AGAGACAACA AAGTGCTGGA AGGCCCTGAG GGGTCAGGGT TGTCAGGTCA 4100 | var(4100):[:0.95]
GGTCGTGTAC AGGAGATCCA GGTGAATTTG AATTTCAGAT CAACAACGAA 4150
CAGTTTTTTA GTATGAGTAA GTCTCAGGCA ATATGTGGGA CATATTAACA 4200
AATTATTCAT GATCTGATAT TGGAAATTAA CTGGGTGTTC TGTATTTTTG 4250
TTTGCTGGAT CTGGCCACCC TGTGGAGGGC AGCTGTTGAC TCCTTGCTTA 4300
TAGGCACTTA GGGGATGTTC TGAGTTCAGA GCCCTTCAGG AGGTGGGGAA 4350
CTGCTCCCTG TGGCCTGCAC TCCCTCCCCA CTCCCTCGTT TTGTATATTC 4400
CTTGGGCAAG GGCTGAGTGC CTGCTTCTGC CCAGCTCAGC CAGAGTGGGC 4450
AGTGGTGCCA GGTGAGAAGA AACAACTGCC CCAGGCCCTT TGCACAAAGG 4500
GCAGCTCCTG ACCAAGCCCT GTCCATGTCT CTTGAAGCCA GGTCCTGAGC 4550
TGCAAGAATG ACATTGTGAT GAGCTTAGAA AGGACTGGAC TAGGGTACAG 4600
AGGTCTTGTG GGAAGAAGAC CTTGGGAGGA GGATCTGGTG GTCTAGGAGG 4650
TAGTCGTGTA GCATTTGGGT TAAAAACTCA GTAATGAGGA CTGCTGGGAT 4700
GGAGGGCTGA ATTCCTCACA GGCACTGTGT GGAGCGCTTC CCACACCTCT 4750 | REPEAT
CCACCTCCCT GTACCACTGG ATCCACACAA CAACACTGAA TCAGGCAGTA 4800
TTGCCCTTCT TTGCAGAAGA GCCAACAGCT GTTCTGAGAG GTCAGGTGAC 4850 | var(4844):[T:0.22]
TTGCCTAAGG TCACTAGGTT CTAAAGTCAT GGAGCCAGGA TCAGATCCAC 4900 | var(4871):[T:0.01]
CTGTTTGCCT CCAGTACCCA TGAAGTTAAC CGCTGCACAA CTCTGCCTCC 4950 | var(4921):[C:0.05]
CATCCTTGGC AGCCCTGACT GGTGTCCCTG GGCCCCGGCC ACCCTGGGGG 5000 | var(5000):[T:0.01]
ATCTCACTAG CACGTGTAAC AGGCCACCAA GTGTTTGCAC AGGACTGGTA 5050
GGAGTTTATT CCATTTCTGG GAAGTCCTAC CCCGCCATGG GTCCTCTAGT 5100
GGCAAACAAA GGGTTTAAGT CTTGGTCTGC ATGCCCTGCT GGTTTCTCTT 5150
CAGCCTTTCC TTCTCCAGGT TAGACTTCCT CATTTCCATC TGCCCTCTAC 5200
GGCTCTTCGA GATCCTGACG GTGTAGCACA GTGGACAGAG CACAGGCTTT 5250 | REPEAT
GGGGGCAGGC AGGTCTGCAT TCAAGGTCTT GAGTAGGTTT CTGTGTGACC 5300
TTGAGTAGGT TTCTGAACTC TCTCAGTATC TATTTCTTCA TTGTAAAAAG 5350 | var(5337):[A:0.49]
AAGTTAAATA CAGTCCCTAC CTCCTAGGAT GATGGATCCA TGGTCCAGGA 5400
CGTAGTCTAG AATTAGGGTT ACAAATTCAG GCTGGGCCAG GCGTGGTGGC 5450 | REPEAT | REPEAT
TCACACCTGT AATCCTAGCA CTTTGGGAGA CCCAGGCAGG TGGATCATTT 5500
GAGGTCAGGA GTTCGAGACC AGCCTGGCCA ACATGATGTA ACCCCACCTC 5550
TACTAAAAAT ACAAAAATTA GCTGGGTGTG GTGGTGCTCG CCTGTAGTCC 5600
CAGCTATTCA GGAGGTTGAG GCACCGAGGA TCACTTGAAC ACGGGAGGCA 5650
GAGGTTGCAG TGAGCCGAGA TCGCACCACT GCACTCCAGC CTGGGCGACA 5700
GAGCAAGACT CTGTCTCAAA AAAACAAACA AAAACTCTGG CTGGATAGAT 5750 | REPEAT
TGATTCTGAC ATTTGTGTCT GGGCTCTGTT GTTTGTAAGC TTTATGAATT 5800
GGGCCAATTT ACTTAATCTC TCAGAGCCTC AGTTCTACCC CATACAGTTA 5850
CACGGATGAC ATGAGTTAGG GGCAGTGCAG TGTAGATGCA TGGCAGGCTG 5900
GTGCTTGTCA GTAGCAGGAG TTGCTGCTGT CGTTGATGAT GCAGGATCCC 5950
TGCCCCACAT AGGTATTTAA CAGTTAGTAA ACGGATACTT ACAGTGACCG 6000
TCCAGATAGA TGCTTGTCTC TGGCAGTTGA GGCACCCCCG TGGGACAAAT 6050
GGGTACTGCC TCCGTTTCGC AGAAAGGAGC CTGAGGCCTT GGCGCCTGGA 6100
CCAGCACCCA GGTTTCCTGT TCCAGCATAG CATCCTGGGA CCCTCTGCTG 6150
CCTTGGCCCA TTGACCCCTG TCTGGGAAAG AGCTGGGCGG CCTCCCCTGG 6200 | var(6157):[T:0.33]
GCTGAGCACT GTAGTGAGAG TCCAGGGGCT CAGGTCCGTC CTTCCTGCCC 6250
AGCTGGGAAA GGTCCTGGCC CTGCCACCCG TTTAGCTCAG GTTCCTTCCC 6300
TGCTTCCAGC TCCTCTTTCA GGCCATACCT GAGAATCCTG TGTCTCTTTG 6350
GCTACCAGGA AGCTCCCCCA GGGCCAAAAG ACAGTGGTTT TGTCCTGACA 6400
GTTACTGGCC CCTCTTTCCC TGGGCTGCCA GGAAGTGCAG GGCCCGTTTG 6450
GCTCAGTTTC TCCCTGGAGT CTTCCTGCAC ATTAAGGCCT CTCTGGGTGT 6500
CCTCCTGTTA CACAGATGAA GAAACTGAGG CAGGGGAGGC TTAGGCTTCT 6550 | REPEAT
GGACGTTTCT TTTCCCAGGG GCTTAAGAGG AGCAACTGGT GCTAACTTTG 6600 | var(6587):[G:0.41]
TTCATATTTA TCAAACCAAA GTGACGTCAC GCAGAGGAGA CTGTGTGTGT 6650 | var(6630):[T:0.29]
GCTAAGGATC TGCAGTATTT CCAGGTTACG TTGTTTTCTT CCCTAACAGA 6700
GATGGCAGAG GTGTGGGCCC AGCTGGGTGC TCACTCTGTA TTACAGGCCC 6750
TTCCAGCGCT AGGAAAAGCC TTTACCTCAT AGGTTGTAAG CATGACCCTT 6800
AGGGTATCCT GCGGATCAGA GGCCCCCCTG GGACTCAGCC TTTCATGCTA 6850 | var(6812):[T:0.21]
ACTGCCATTC TTTCCGGAAT AATCCAGGGC TCTGCAGGGC CCATTTATTA 6900
AAGACCTACT CTGTGTACAG TCTAGGCATA GGAGCGAGAG CATTGAAAAT 6950
GAAGATCATT TCCAAAACAA GCCCAGAGTG GGAAGAGTTA GGTGTCGATT 7000
TTGGGGAGGA AAGGGGTGAT GGGAGCTACC TTCCCTCTGT CTCTTTCCTC 7050
GGTGTCTTCT TTAAAAGCTG GATGTTGGGA CCACTGTGGC TGACTCTGCG 7100 | REPEAT
GTGTGGCCCT GAGCAAGTTC CTTCCTGTCT GTGGTCCAGG GTTTACTATC 7150 | var(7132):[C:0.08]
AGATGGAGGG GACAGTGGTT AGCTCTGAAG ATAAAGATCA GAATCGTCCT 7200 | REPEAT | var(7196):[A:0.22]
CATGCCCAGC CCTGCCTGCC CCCAACTTCC TGTCCCTCCC TCCTCCACTC 7250
CCCTCACCTT CCACTCCAGC CACACTGGCT TCTGTTCAGT TTCCAGAAAG 7300
TTCCACGCCC CCCTTCTGCC ACAGAGCCTT TGTGAGTGCC GCCCCTCCTG 7350
CTCAAAATGC TCTTCTTCCC CCTCAGCCTC CCCCATCCCT TCCTCAGAGA 7400
AGCCCCTGAC CACCCCAACC CTCCCAGCCT CCCTGCTGTT CAATCAGGTG 7450
CCCTTTCCCT TGCTTTCCTT CAGGATGCTT TCCTTCAATC AGGTGCTTTC 7500
CTTCGGGATG AGGGTTCACT GCACCTCCAT TCCTAGGGCA GAGTACCTGG 7550
TTAGCGAGGT CAGTACTGAG AGCGCAGCTC CGAATCTGCT CTGCACACCT 7600
CTGACTCCCC AGGGTGAATG AAAAGCAGGT GCCAGTGATG CTGGGTGACA 7650
CTAAATGTTT AAGAAACTTA ACACCGTTTA TCACTTCAAG CCCCTGGGGA 7700
TTGAAATCCA TGGAAGACTA CACCTCTCTT GCCTCAGTTT CCCCATCTTT 7750 | REPEAT
GTAATGGGGA GAGGCCTAAT GGCTGGACAG CACAGCCTGG GTTTGAGTCC 7800 | var(7751):[A:0.30] | REPEAT
TGGCTCTGCC ACTGGCCTGC TCTGTGACCT TGGGCAAGTT ACTTCCTTCT 7850
GAGCCTCAGT TTTCTCAGCT GTAAAATGGG GATAATAAGA CCTCAGAGGA 7900
TTGTAAGGAT TTAGTGCATT TATATACAGA AAGCACTTAG AATGGCACCT 7950
AGCACATAGG AAGCGCTCAA TAGTAGACGA AGGTAGGTGA GGTGATGGCG 8000
AAGATTCCTT CTAGAGCTAG ACTTCTGTAA CACACTACTC AGCCTGGTCA 8050
GAGTCTCGAG ATCTTAAAGT TGGGTGCATC GGTCCTTACA GAATTATTTT 8100
CCTAGTCTCT TGGAGCTGAG AAAGGAATTT CTTTTGGGCC ACAGAGCCAG 8150
GCCCCTTGTG GTTCACTCTG GCCCTGGGCC CTGGAGGTAA AGGTGAAGTA 8200
TCTCAGCCAC CAGCTCTGGA TTCCATCTGC CCCCATGTGT GGACCTTTCT 8250
CACAAGCCCA AACAGTTCCC AGCTGAAGGC CTGCGCCCCC AGCGGGGAGG 8300 | REPEAT
TTGGGTGCAC TGGTTTTGGA GGCGAGTTTG AAATTTAATT CCAGTTTTGC 8350
CACTTGCTAC CTGTGGAGTC TTGATCAACA TAATTTATCT CTGAGTCTGG 8400
TTTTCTCATC TGTGAAATGG GAATAATAGT ACCAGAGGC