************************************************************* **** **** **** Output from PHASE v2.0 **** **** Code by M Stephens, with contributions from N Li **** **** **** ************************************************************* BEGIN COMMAND_LINE /usr/local/genome/lib/phase/PHASE2 -d1 adrb1.phase.inp adrb1.phase.out END COMMAND_LINE BEGIN OUTFILE_LIST adrb1.phase.out_freqs : haplotype frequency estimates adrb1.phase.out_pairs : most likely haplotype pairs for each individual adrb1.phase.out_recom : estimates of recombination parameters adrb1.phase.out_monitor : file for monitoring convergence END OUTFILE_LIST BEGIN INPUT_SUMMARY Number of Individuals: 47 Number of Loci: 35 Positions of loci: 137 162 320 774 861 1299 1691 1917 2094 2720 3160 3302 4077 4463 5079 5421 5576 7201 7862 8032 8882 10067 10709 10843 12091 12815 12841 13408 13805 14238 14495 14968 15304 15809 15959 END INPUT_SUMMARY List of haplotypes found in best reconstruction, with counts. (See file adrb1.phase.out_freqs for haplotype population frequency estimates) BEGIN LIST_SUMMARY 1 CAAGCIAAIGCTCACTTTAGCDCCAGGCCCAAGAI 1.000000 2 CAAGCIAAIGCTCACTTTAGCDCTAGGCCCAAGAI 16.000000 3 CAAGCIAAIGCTCACTTTAGCITTCAATTGCGGAD 1.000000 4 CAAGCIAAIGCTCACTTTATCDCCCGGTTGCGAGI 2.000000 5 CAAGCIAAIGCTCACTTTATCDCTAGGCCCAAGAI 2.000000 6 CAAGCIAAIGCCCATGTTAGGDCCAGGCCCAAGAI 2.000000 7 CAAGCIAAIGCCCATGTTGGCDCTCGGTTGCGGAI 1.000000 8 CAAGCIAAIGCCCATGTTGGCICTCGATTGCGGAD 1.000000 9 CAAGCIAAIGCCCATGTCGGCDCTCGGTTGCGAGI 2.000000 10 CAAGCIAAIGCCCATGTCGGCDCTCGGTTGCGGAI 1.000000 11 CAAGCIAAIGCCCATGTCGGCICTCGGCCCCAGAI 1.000000 12 CAAGCIAAIACTCATTTTAGGDCCAGGCCCAAGAI 21.000000 13 CAAGCIAAIACTCATTTTAGGDCTAGGCCCAAGAI 2.000000 14 CAAGCIAAIACTCATTTTATGDCTAGGCCCAAGAI 2.000000 15 CAAGCIAAIACTCATTTTATGDCTAGGCCCAGAGI 1.000000 16 CAAGCIAGIACTCATTTTAGGDCCAGGCCCAAGAI 7.000000 17 CAAGCIAGIACTCATTTTAGGDCTAGGCCCAAGAI 1.000000 18 CAAGCDAAIGCTCACTTTAGCDCTAGGCCCAAGAI 10.000000 19 CGAGCIAADGCCCATTTTAGCDCCAGGCCCAAGAI 7.000000 20 CGAGCIAADGCCCATTTTAGCDCTAGGCCCAAGAI 1.000000 21 TAGATIGAIGTCTCTGCCGGCITTCAATTGCGGAD 12.000000 END LIST_SUMMARY Summary of best reconstruction (numbers refer to the list of haplotypes given above) BEGIN BESTPAIRS_SUMMARY D001: (4,18) D002: (12,18) D003: (2,12) D004: (2,14) D005: (8,12) D006: (1,10) D007: (2,7) D008: (2,12) D009: (12,12) D010: (5,6) D011: (4,14) D012: (2,19) D013: (12,21) D014: (18,21) D015: (6,18) D016: (12,16) D033: (12,16) D034: (12,16) D035: (2,15) D036: (12,12) D037: (12,12) D038: (9,11) D039: (5,19) D040: (9,12) E001: (19,21) E002: (16,21) E003: (2,21) E004: (2,19) E005: (2,18) E006: (16,18) E007: (2,21) E008: (18,20) E009: (21,21) E010: (2,13) E011: (2,13) E012: (18,21) E013: (2,19) E014: (2,12) E015: (2,12) E016: (2,18) E017: (19,21) E018: (12,21) E019: (17,18) E020: (16,19) E021: (3,12) E022: (12,16) E023: (12,21) END BESTPAIRS_SUMMARY Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in []: BEGIN BESTPAIRS1 0 D001 C A A G C I A A I G C T C A C T T T A T C D C C C G G T T G C G A G I C A A G C D A A I G C T C A C T T T A G C D C T A G G C C C A A G A I 0 D002 C A A G C I A A I A C T C A T T T T A G G D C C A G G C C C A A G A I C A A G C D A A I G C T C A C T T T A G C D C T A G G C C C A A G A I 0 D003 C A A G C I A A I G C T C A C T T T A G C D C T A G G C C C A A G A I C A A G C I A A I A C T C A T T T T A G G D C C A G G C C C A A G A I 0 D004 C A A G C I A A I G C T C A C T T T A (G) C D C T A G G C C C A A G A I C A A G C I A A I A C T C A T T T T A (T) G D C T A G G C C C A A G A I 0 D005 C A A G C I A A I G C C C A T G T T G G C I C T C G A T T G C G G A D C A A G C I A A I A C T C A T T T T A G G D C C A G G C C C A A G A I 0 D006 C A A G C I A A I G C T C A C T T (T) A G C D C C A G G C C C A A G A I C A A G C I A A I G C C C A T G T (C) G G C D C T C G G T T G C G G A I 0 D007 C A A G C I A A I G C T C A C T T T A G C D C T A G G C C C A A G A I C A A G C I A A I G C C C A T G T T G G C D C T C G G T T G C G G A I 0 D008 C A A G C I A A I G C T C A C T T T A G C D C T A G G C C C A A G A I C A A G C I A A I A C T C A T T T T A G G D C C A G G C C C A A G A I 0 D009 C A A G C I A A I A C T C A T T T T A G G D C C A G G C C C A A G A I C A A G C I A A I A C T C A T T T T A G G D C C A G G C C C A A G A I 0 D010 C A A G C I A A I G C T C A C T T T A T C D C T A G G C C C A A G A I C A A G C I A A I G C C C A T G T T A G G D C C A G G C C C A A G A I 0 D011 C A A G C I A A I G C T C A C T T T A T C D C C C G G T T G C G A G I C A A G C I A A I A C T C A T T T T A T G D C T A G G C C C A A G A I 0 D012 C A A G C I A A I G C T C A C T T T A G C D C T A G G C C C A A G A I C G A G C I A A D G C C C A T T T T A G C D C C A G G C C C A A G A I 0 D013 C A A G C I A A I A C T C A T T T T A G G D C C A G G C C C A A G A I T A G A T I G A I G T C T C T G C C G G C I T T C A A T T G C G G A D 0 D014 C A A G C D A A I G C T C A C T T T A G C D C T A G G C C C A A G A I T A G A T I G A I G T C T C T G C C G G C I T T C A A T T G C G G A D 0 D015 C A A G C I A A I G C C C A T G T T A G G D C C A G G C C C A A G A I C A A G C D A A I G C T C A C T T T A G C D C T A G G C C C A A G A I 0 D016 C A A G C I A A I A C T C A T T T T A G G D C C A G G C C C A A G A I C A A G C I A G I A C T C A T T T T A G G D C C A G G C C C A A G A I 0 D033 C A A G C I A A I A C T C A T T T T A G G D C C A G G C C C A A G A I C A A G C I A G I A C T C A T T T T A G G D C C A G G C C C A A G A I 0 D034 C A A G C I A A I A C T C A T T T T A G G D C C A G G C C C A A G A I C A A G C I A G I A C T C A T T T T A G G D C C A G G C C C A A G A I 0 D035 C A A G C I A A I (G) C T C A (C) T T T A (G) (C) D C T A G G C C C A (A) (G) (A) I C A A G C I A A I (A) C T C A (T) T T T A (T) (G) D C T A G G C C C A (G) (A) (G) I 0 D036 C A A G C I A A I A C T C A T T T T A G G D C C A G G C C C A A G A I C A A G C I A A I A C T C A T T T T A G G D C C A G G C C C A A G A I 0 D037 C A A G C I A A I A C T C A T T T T A G G D C C A G G C C C A A G A I C A A G C I A A I A C T C A T T T T A G G D C C A G G C C C A A G A I 0 D038 C A A G C I A A I G C [C] C A T G T C G G C (D) C T C G G T T G C G A G I C A A G C I A A I G C [C] C A T G T C G G C (I) C T C G G C C C C A G A I 0 D039 C A A G C I A A I G C T C A C T T T A T C D C T A G G C C C A A G A I C G A G C I A A D G C C C A T T T T A G C D C C A G G C C C A A G A I 0 D040 C A A G C I A A I G C [C] C A T G T C G G C D C T C G G T T G C G A G I C A A G C I A A I A C T C A T T T T A G G D C C A G G C C C A A G A I 0 E001 C G A G C I A A D G C C C A T T T T A G C D C C A G G C C C A A G A I T A G A T I G A I G T C T C T G C C G G C I T T C A A T T G C G G A D 0 E002 C A A G C I A G I A C T C A T T T T A G G D C C A G G C C C A A G A I T A G A T I G A I G T C T C T G C C G G C I T T C A A T T G C G G A D 0 E003 C A A G C I A A I G C T C A C T T T A G C D C T A G G C C C A A G A I T A G A T I G A I G T C T C T G C C G G C I T T C A A T T G C G G A D 0 E004 C A A G C [I] A A I G C T C A C T T T A G C D C T A G G C C C A A G A I C G A G C I A A D G C C C A T T T T A G C D C C A G G C C C A A G A I 0 E005 C A A G C I A A I G C T C A C T T T A G C D C T A G G C C C A A G A I C A A G C D A A I G C T C A C T T T A G C D C T A G G C C C A A G A I 0 E006 C A A G C I A G I A C T C A T T T T A G G D C C A G G C C C A A G A I C A A G C D A A I G C T C A C T T T A G C D C T A G G C C C A A G A I 0 E007 C A A G C I A A I G C T C A C T T T A G C D C T A G G C C C A A G A I T A G A T I G A I G T C T C T G C C G G C I T T C A A T T G C G G A D 0 E008 C A A G C D A A I G C T C A C T T T A G C D C T A G G C C C A A G A I C G A G C I A A D G C C C A T T T T A G C D C T A G G C C C A A G A I 0 E009 T A G A T I G A I G T C T C T G C C G G C I T T C A A T T G C G G A D T A G A T I G A I G T C T C T G C C G G C I T T C A A T T G C G G A D 0 E010 C A A G C I A A I G C T C A C T T T A G C D C T A G G C C C A A G A I C A A G C I A A I A C T C A T T T T A G G D C T A G G C C C A A G A I 0 E011 C A A G C I A A I G C T C A C T T T A G C D C T A G G C C C A A G A I C A A G C I A A I A C T C A T T T T A G G D C T A G G C C C A A G A I 0 E012 C A A G C D A A I G C T C A C T T T A G C D C T A G G C C C A A G A I T A G A T I G A I G T C T C T G C C G G C I T T C A A T T G C G G A D 0 E013 C A A G C I A A I G C T C A C T T T A G C D C T A G G C C C A A G A I C G A G C I A A D G C C C A T T T T A G C D C C A G G C C C A A G A I 0 E014 C A A G C I A A I G C T C A C T T T A G C D C T A G G C C C A A G A I C A A G C I A A I A C T C A T T T T A G G D C C A G G C C C A A G A I 0 E015 C A A G C I A A I G C T C A C T T T A G C D C T A G G C C C A A G A I C A A G C I A A I A C T C A T T T T A G G D C C A G G C C C A A G A I 0 E016 C A A G C I A A I G C T C A C T T T A G C D C T A G G C C C A A G A I C A A G C [D] A A I G C T C A C T T T A G C D C T A G G C C C A A G A I 0 E017 C G A G C I A A D G C C C A T T T T A G C D C C A G G C C C A A G A I T A G A T I G A I G T C T C T G C C G G C I T T C A A T T G C G G A D 0 E018 C A A G C I A A I A C T C A T T T T A G G D C C A G G C C C A A G A I T A G A T I G A I G T C T C T G C C G G C I T T C A A T T G C G G A D 0 E019 C A A G C I A G I A C T C A T T T T A G G D C T A G G C C C A A G A I C A A G C D A A I G C T C A C T T T A G C D C T A G G C C C A A G A I 0 E020 C A A G C I A G I A C T C A T T T T A G G D C C A G G C C C A A G A I C G A G C I A A D G C C C A T T T T A G C D C C A G G C C C A A G A I 0 E021 C A A G C I A A I (G) C T C A (C) T T T A G (C) [I] [T] [T] C A A T T G C G G A D C A A G C I A A I (A) C T C A (T) T T T A G (G) D C [C] A G G C C C A A G A I 0 E022 C A A G C I A A I A C T C A T T T T A G G D C C A G G C C C A A G A I C A A G C I A G I A C T C A T T T T A G G D C C A G G C C C A A G A I 0 E023 C A A G C I A A I A C T C A T T T T A G G D C C A G G C C C A A G A I T A G A T I G A I G T C T C T G C C G G C I T T C A A T T G C G G A D END BESTPAIRS1 Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in [] with phase known positions indicated by = BEGIN BESTPAIRS2 0 D001 = = = = = I = = = = = = = = = = ? ? = T = = = ? C = = T T ? C G A G = = = = = = D = = = = = = = = = = ? ? = G = = = ? A = = C C ? A A G A = 0 D002 = = = = = I = = = A = = = = ? = = ? = = G = = C = = = = = = = = = = = = = = = = D = = = G = = = = ? = = ? = = C = = T = = = = = = = = = = = 0 D003 = = = = = = = = = G = = = = C = = = = = C = = T = ? ? = = ? = = = = = = = = = = = = = = A = = = = T = = = = = G = = C = ? ? = = ? = = = = = 0 D004 = = = = = = = = = G = ? = = C = = ? = (G) ? = = = = = = = = = = = = = = = = = = = = = = = A = ? = = T = = ? = (T) ? = = = = = = = = = = = = = = 0 D005 = = = = = = = = = G = C = = ? G = = G = ? I = T C = A T T ? C G = = D = = = = = = = = = A = T = = ? T = = A = ? D = C A = G C C ? A A = = I 0 D006 = = = = = = = = = = = T = = C T = (T) A = = = = C A = = C C C A A = = = = = = = = = = = = = = C = = T G = (C) G = = = = T C = = T T G C G = = = 0 D007 = = = = = = = = = = ? ? = = C T = = A = = = = = A = = C C ? A A = = = = = = = = = = = = = ? ? = = T G = = G = = = = = C = = T T ? C G = = = 0 D008 = = = = = = = = = G = = = = C = = = = = ? = = T = = = = = = = = = = = = = = = = = = = = A = = = = T = = = = = ? = = C = = = = = = = = = = = 0 D009 = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = 0 D010 ? ? ? = = = = = = = = T = = C T = = = T C ? = T = = = = = = = = = = = ? ? ? = = = = = = = = C = = T G = = = G G ? = C = = = = = = = = = = = 0 D011 = = = = = = = = = G = = = = C = = = = = C = = C C = = T T G C G A G = = = = = = = = = = A = = = = T = = = = = G = = T A = = C C C A A G A = 0 D012 = A = = = = = = I = = T = = C = = = = = ? = = T = = = = = = = = = = = = G = = = = = = D = = C = = T = = = = = ? = = C = = = = = = = = = = = 0 D013 C = A G C = A = = A C T C A = T T T A = ? D C C A G G C C C A A = = I T = G A T = G = = G T C T C = G C C G = ? I T T C A A T T G C G = = D 0 D014 C = A G C D A = = = C T C A C T T T A = ? D C = A G G C C C A A = = I T = G A T I G = = = T C T C T G C C G = ? I T = C A A T T G C G = = D 0 D015 = = = = = I = = = = = C = = T G = = = = G = = C = = = = = = = = = = = = = = = = D = = = = = T = = C T = = = = C = = T = = = = = = = = = = = 0 D016 = = = = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 D033 = = = = = = = A = = = = = = = = ? = = = = = = ? = = = = = = = = = = = = = = = = = = G = = = = = = = = ? = = = = = = ? = = = = = = = = = = = 0 D034 = = = = = = = A = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = = = = = ? = = = = = = = = = = = = = = 0 D035 = = = = = = = = = (G) = = = = (C) = = = = (G) (C) = = = = = = = = = ? (A) (G) (A) = = = = = = = = = = (A) = = = = (T) = = = = (T) (G) = = = = = = = = = ? (G) (A) (G) = 0 D036 = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = 0 D037 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = 0 D038 = = = = = = = = = = ? ? = = = = = = = = = (D) = = = = = T T G = G A G = = = = = = = = = = = ? ? = = = = = = = = = (I) = = = = = C C C = A G A = 0 D039 = A = = = = = = I = = T = = C = = = = T ? = = T = = = = = = = = = = = = G = = = = = = D = = C = = T = = = = G ? = = C = = = = = = = = = = = 0 D040 = = = = = ? = = ? G ? ? = = = G = C ? ? ? = = T C ? ? ? T G C G A G = = = = = = ? = = ? A ? ? = = = T = T ? ? ? = = C A ? ? ? C C A A G A = 0 E001 C G A G C = A = D = C = C A = T T T A = = ? C ? A G G C C ? A A = = I T A G A T = G = I = T = T C = G C C G = = ? T ? C A A T T ? C G = = D 0 E002 C = A G C = A G = A C T C A = T T T A = G D C C A ? ? C C C A A = = I T = G A T = G A = G T C T C = G C C G = C I T T C ? ? T T G C G = = D 0 E003 C = A G C = A = = = C T C A C T T T A = = D C = A G G C C C ? A = = I T = G A T = G = = = T C T C T G C C G = = I T = C A A T T G ? G = = D 0 E004 = A = = = ? = = I = = T = = C = = = = = = = = T = = = = = = = = = = = = G = = = ? = = D = = C = = T = = = = = = = = C = = = = = = = = = = = 0 E005 = = = = = I = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = D = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = 0 E006 = = = = = I = G = A = = = = T = = = = = G = = C = = = = = = = = = = = = = = = = D = A = G = = = = C = = = = = C = = T = = = = = = = = = = = 0 E007 C = A G C = A = = = C T C A C T T T A = = D C = A G G C C C ? A = = I T = G A T = G = = = T C T C T G C C G = = I T = C A A T T G ? G = = D 0 E008 = A = = = D = = ? ? ? ? = ? C = = ? = = = ? = = = ? ? ? = = = = = ? ? = G = = = I = = ? ? ? ? = ? T = = ? = = = ? = = = ? ? ? = = = = = ? ? 0 E009 = = = = = = = = = = = = = = = = = ? = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = ? = = = = = = = = = = = 0 E010 = = = = = = = = = G ? ? = = C = = ? = = C = = = = ? ? = = = = = = = = = = = = = = = = = A ? ? = = T = = ? = = G = = = = ? ? = = = = = = = = 0 E011 = = = = = = = = = G = = = = C = = = = = C = = = = = = = = = = = = = = = = = = = = = = = A = = = = T = = = = = G = = = = = = = = = = = = = = 0 E012 C = A G C D A = = = C T C A C T T T A = = D C = A G G C C C A A = = I T = G A T I G = = = T C T C T G C C G = = I T = C A A T T G C G = = D 0 E013 = A = = = = = = I = = T = = C = = = = = = = = T = = = = = = = = = = = = G = = = = = = D = = C = = T = = = = = = = = C = = = = = = = = = = = 0 E014 = = = = = = = = = G = = = = C = = = = = C = = T = = = = = = = = = = = = = = = = = = = = A = = = = T = = = = = G = = C = = = = = = = = = = = 0 E015 = = = = = = = = = G = = = = C = = = = = C = = T = = = = = = = = = = = = = = = = = = = = A = = = = T = = = = = G = = C = = = = = = = = = = = 0 E016 = = = = = ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E017 ? G A ? ? = A = D = C = C A = T T ? A = = D C C A G G C C C ? A = = I ? A G ? ? = G = I = T = T C = G C ? G = = I T T C A A T T G ? G = = D 0 E018 C = A G C = A = = A C ? C ? = T T T A = G D C C A G G C C C A A = = I T = G A T = G = = G T ? T ? = G C C G = C I T T C A A T T G C G = = D 0 E019 = = = = = I = G = A = = = = T = = = = = G = = = = = = = = = = = = = = = = = = = D = A = G = = = = C = = = = = C = = = = = = = = = = = = = = 0 E020 = A = = = = = G I A = T = = ? ? ? = = = G = = = = = = = ? = = = = = = = G = = = = = A D G = C = = ? ? ? = = = C = = = = = = = ? = = = = = = 0 E021 = = = = = = = = = (G) = = = = (C) = = = = = (C) ? ? ? C A A T T G ? G = = D = = = = = = = = = (A) = = = = (T) = = = = = (G) ? ? ? A G G C C C ? A = = I 0 E022 = = = = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E023 C = A G C = A = = A C T C A = T T T A = G ? C C A G G ? C C ? A = = I T = G A T = G = = G T C T C = G C C G = C ? T T C A A ? T G ? G = = D END BESTPAIRS2 Phase probabilities at each site with phase known positions indicated by = and missing data positions indicated by ? BEGIN PHASEPROBS = = = = = 0.99 = = = = = = = = = = ? ? = 1.00 = = = ? 1.00 = = 1.00 1.00 ? 1.00 1.00 1.00 1.00 = = = = = = 0.99 = = = 1.00 = = = = ? = = ? = = 1.00 = = 1.00 = = = = = = = = = = = = = = = = = = = = 1.00 = = = = 1.00 = = = = = 1.00 = = 0.99 = ? ? = = ? = = = = = = = = = = = = = = 1.00 = ? = = 1.00 = = ? = 0.73 ? = = = = = = = = = = = = = = = = = = = = = = = 0.95 = 0.95 = = ? 0.95 = = 1.00 = ? 1.00 = 1.00 1.00 = 0.93 1.00 1.00 ? 1.00 1.00 = = 0.93 = = = = = = = = = = = 0.92 = = 0.94 0.94 = 0.64 0.94 = = = = 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = ? ? = = 1.00 1.00 = = 1.00 = = = = = 1.00 = = 1.00 1.00 ? 1.00 1.00 = = = = = = = = = = = = 1.00 = = = = 1.00 = = = = = ? = = 0.99 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = ? ? ? = = = = = = = = 1.00 = = 1.00 1.00 = = = 0.95 1.00 ? = 1.00 = = = = = = = = = = = = = = = = = = = = 1.00 = = = = 1.00 = = = = = 1.00 = = 0.91 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 = = = = = = 1.00 = = 1.00 = = 1.00 = = = = = ? = = 0.99 = = = = = = = = = = = 1.00 = 1.00 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = ? 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 0.99 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = ? 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 = = = = = 0.99 = = = = = 1.00 = = 1.00 1.00 = = = = 1.00 = = 1.00 = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = ? = = = = = = ? = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = 0.88 = = = = 0.88 = = = = 0.88 0.88 = = = = = = = = = ? 0.62 0.62 0.62 = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = ? ? = = = = = = = = = 0.87 = = = = = 1.00 1.00 1.00 = 1.00 1.00 1.00 = = 1.00 = = = = = = 1.00 = = 1.00 = = 1.00 = = = = 0.94 ? = = 1.00 = = = = = = = = = = = = = = = = ? = = ? 1.00 ? ? = = = 1.00 = 1.00 ? ? ? = = 1.00 1.00 ? ? ? 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 = = ? 1.00 ? 1.00 1.00 1.00 1.00 1.00 ? 1.00 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 ? ? 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 = 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 ? 1.00 = = 1.00 = 1.00 = = = ? = = 1.00 = = 1.00 = = 1.00 = = = = = = = = 0.99 = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = 1.00 = 0.98 = 1.00 = = = = 1.00 = = = = = 1.00 = = 1.00 = = = = = = = = = = = 1.00 = 1.00 1.00 1.00 = 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 ? 1.00 = = 1.00 = 1.00 = = = 0.99 = = ? ? ? ? = ? 1.00 = = ? = = = ? = = = ? ? ? = = = = = ? ? = = = = = = = = = = = = = = = = = ? = = = = = ? = = = = = = = = = = = = = = = = = = = = 1.00 ? ? = = 1.00 = = ? = = 1.00 = = = = ? ? = = = = = = = = = = = = = = = = = 1.00 = = = = 1.00 = = = = = 1.00 = = = = = = = = = = = = = = 1.00 = 1.00 1.00 1.00 0.99 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 = 1.00 = = = = = = 1.00 = = 1.00 = = 1.00 = = = = = = = = 0.99 = = = = = = = = = = = = = = = = = = = = 1.00 = = = = 1.00 = = = = = 1.00 = = 0.99 = = = = = = = = = = = = = = = = = = = = 1.00 = = = = 1.00 = = = = = 1.00 = = 0.99 = = = = = = = = = = = = = = = = ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = ? 1.00 1.00 ? ? = 1.00 = 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 ? 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 ? 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 = 1.00 = = 1.00 1.00 ? 1.00 ? = 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 = = = = = 1.00 = 0.94 = 1.00 = = = = 1.00 = = = = = 1.00 = = = = = = = = = = = = = = = 1.00 = = = = = 1.00 1.00 1.00 = 1.00 = = ? ? ? = = = 1.00 = = = = = = = ? = = = = = = = = = = = = = = = 0.53 = = = = 0.53 = = = = = 0.53 ? ? ? 1.00 1.00 1.00 1.00 1.00 1.00 ? 1.00 = = 1.00 = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = 1.00 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 ? 1.00 1.00 1.00 1.00 1.00 ? 1.00 1.00 ? 1.00 = = 1.00 END PHASEPROBS