Site CDNA-Pos Description Allele1 AD-freq ED-freq Total-freq Allele2 AD-freq ED-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 000127 00000 ------------ A 0.96 1.00 0.98 G 0.04 0.00 0.02 0000 --- --- --- --- 000198 00000 ------------ C 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 000221 00000 ------------ C 0.83 0.93 0.88 T 0.17 0.07 0.12 0000 --- --- --- --- 000223 00000 ------------ G 0.83 1.00 0.91 A 0.17 0.00 0.09 0000 --- --- --- --- 000614 00000 ------------ A 0.85 0.61 0.73 G 0.15 0.39 0.27 0000 --- --- --- --- 000731 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 000860 00000 ------------ A 0.94 1.00 0.97 C 0.06 0.00 0.03 0000 --- --- --- --- 001365 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 001514 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 001691 00088 5' UTR T 0.94 0.98 0.96 C 0.06 0.02 0.04 0000 --- --- --- --- 001880 00277 5' UTR C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 002066 00463 NON-SYN C 0.96 0.91 0.94 T 0.04 0.09 0.06 0007 CGG TGG ARG(R) TRP(W) 002418 00000 ------------ C 0.89 1.00 0.95 G 0.11 0.00 0.05 0000 --- --- --- --- 002631 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 003185 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 003280 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 003413 00000 ------------ C 0.98 0.63 0.81 T 0.02 0.37 0.19 0000 --- --- --- --- 003455 00000 ------------ C 0.94 1.00 0.97 T 0.06 0.00 0.03 0000 --- --- --- --- 003714 00000 ------------ C 0.98 0.93 0.96 G 0.02 0.07 0.04 0000 --- --- --- --- 003776 00000 ------------ A 0.80 1.00 0.90 G 0.20 0.00 0.10 0000 --- --- --- --- 003795 00000 ------------ G 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 003807 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 003856 00000 ------------ C 0.93 1.00 0.97 T 0.07 0.00 0.03 0000 --- --- --- --- 003858 00000 ------------ C 0.83 0.61 0.72 T 0.17 0.39 0.28 0000 --- --- --- --- 003877 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 003907 00000 ------------ C 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 004464 00000 ------------ C 0.69 0.93 0.81 T 0.31 0.07 0.19 0000 --- --- --- --- 004586 00000 ------------ C 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 004913 00000 ------------ T 0.94 1.00 0.97 C 0.06 0.00 0.03 0000 --- --- --- --- 005091 00000 ------------ T 0.92 1.00 0.96 C 0.08 0.00 0.04 0000 --- --- --- --- 005156 00798 SYNON G 1.00 0.98 0.99 A 0.00 0.02 0.01 0118 CCG CCA PRO(P) PRO(P) 005278 00000 ------------ C 0.92 1.00 0.96 T 0.08 0.00 0.04 0000 --- --- --- --- 005547 00864 SYNON C 0.60 0.50 0.56 T 0.40 0.50 0.44 0140 GCC GCT ALA(A) ALA(A) 005770 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 005845 01026 SYNON C 1.00 0.98 0.99 T 0.00 0.02 0.01 0194 GGC GGT GLY(G) GLY(G) 005953 00000 ------------ T 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 006023 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 006078 00000 ------------ G 0.98 0.63 0.80 A 0.02 0.37 0.20 0000 --- --- --- --- 006105 00000 ------------ A 0.98 0.65 0.82 T 0.02 0.35 0.18 0000 --- --- --- --- 006413 00000 ------------ - 0.10 0.37 0.23 + 0.90 0.63 0.77 0000 --- --- --- --- 006505 00000 ------------ G 0.98 0.63 0.81 T 0.02 0.37 0.19 0000 --- --- --- --- 006659 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 006926 00000 ------------ G 1.00 0.93 0.97 A 0.00 0.07 0.03 0000 --- --- --- --- 007214 00000 ------------ A 0.75 0.93 0.84 G 0.25 0.07 0.16 0000 --- --- --- --- 007412 00000 ------------ - 0.44 0.50 0.47 + 0.56 0.50 0.53 0000 --- --- --- --- 007452 00000 ------------ T 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 007550 00000 ------------ T 0.90 0.63 0.77 C 0.10 0.37 0.23 0000 --- --- --- --- 007664 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 007792 00000 ------------ C 0.90 1.00 0.95 G 0.10 0.00 0.05 0000 --- --- --- --- 007857 00000 ------------ C 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 008166 00000 ------------ - 0.96 1.00 0.98 + 0.04 0.00 0.02 0000 --- --- --- --- 009374 00000 ------------ T 0.92 0.95 0.93 C 0.08 0.05 0.07 0000 --- --- --- --- 009655 01380 SYNON C 0.96 1.00 0.98 T 0.04 0.00 0.02 0312 CGC CGT ARG(R) ARG(R) 009717 00000 ------------ C 0.98 0.93 0.96 T 0.02 0.07 0.04 0000 --- --- --- --- 009775* 009943 00000 ------------ G 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 010019 00000 ------------ T 0.94 1.00 0.97 G 0.06 0.00 0.03 0000 --- --- --- --- 012365 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 012581 00000 ------------ G 0.92 1.00 0.96 A 0.08 0.00 0.04 0000 --- --- --- --- 012588 00000 ------------ - 0.58 0.13 0.36 + 0.42 0.87 0.64 0000 --- --- --- --- 012597 00000 ------------ C 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 013215 00000 ------------ G 0.71 0.53 0.62 C 0.29 0.47 0.38 0000 --- --- --- --- 013244 00000 ------------ C 1.00 0.97 0.99 T 0.00 0.03 0.01 0000 --- --- --- --- 015978 00000 ------------ - 0.02 0.36 0.19 + 0.98 0.64 0.81 0000 --- --- --- --- 016228 00000 ------------ T 0.93 1.00 0.97 C 0.07 0.00 0.03 0000 --- --- --- --- 016231 00000 ------------ G 1.00 0.93 0.97 A 0.00 0.07 0.03 0000 --- --- --- --- 016304 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 016387 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 016468 01786 NON-SYN C 0.98 0.63 0.81 G 0.02 0.37 0.19 0448 CAA GAA GLN(Q) GLU(E) 016494 01812 NON-SYN G 0.96 1.00 0.98 T 0.04 0.00 0.02 0456 CAG CAT GLN(Q) HIS(H) 016496 01814 NON-SYN C 1.00 0.98 0.99 T 0.00 0.02 0.01 0457 CCG CTG PRO(P) LEU(L) 016694 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 016920 00000 ------------ G 0.98 0.63 0.81 T 0.02 0.37 0.19 0000 --- --- --- --- 016936 00000 ------------ C 0.75 0.93 0.84 T 0.25 0.07 0.16 0000 --- --- --- --- 017083 00000 ------------ C 0.92 0.93 0.93 T 0.08 0.07 0.07 0000 --- --- --- --- 017169 00000 ------------ T 0.98 0.63 0.81 C 0.02 0.37 0.19 0000 --- --- --- --- 017248 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 017609 00000 ------------ C 0.98 0.63 0.81 G 0.02 0.37 0.19 0000 --- --- --- --- 017672 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 017739 00000 ------------ T 0.98 0.63 0.81 C 0.02 0.37 0.19 0000 --- --- --- --- 018131 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 018150 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 018270 00000 ------------ G 0.96 0.93 0.95 A 0.04 0.07 0.05 0000 --- --- --- --- 018374 00000 ------------ G 0.98 0.65 0.82 C 0.02 0.35 0.18 0000 --- --- --- --- 018479 00000 ------------ T 1.00 0.98 0.99 C 0.00 0.02 0.01 0000 --- --- --- --- 018623 00000 ------------ A 0.65 0.50 0.57 T 0.35 0.50 0.43 0000 --- --- --- --- 018718 00000 ------------ G 0.75 0.93 0.84 C 0.25 0.07 0.16 0000 --- --- --- --- 018983 02160 SYNON A 0.72 0.50 0.61 G 0.28 0.50 0.39 0572 ACA ACG THR(T) THR(T) 019069 00000 ------------ G 0.93 1.00 0.97 A 0.07 0.00 0.03 0000 --- --- --- --- 019214 00000 ------------ G 0.98 0.65 0.82 C 0.02 0.35 0.18 0000 --- --- --- --- 019351 00000 ------------ T 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 019498 00000 ------------ T 0.75 0.93 0.84 C 0.25 0.07 0.16 0000 --- --- --- --- 019729 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 019761 00000 ------------ A 0.98 0.65 0.82 G 0.02 0.35 0.18 0000 --- --- --- --- 019923 00000 ------------ A 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 019925 00000 ------------ G 0.71 0.50 0.61 A 0.29 0.50 0.39 0000 --- --- --- --- 019961 02241 SYNON C 0.96 1.00 0.98 T 0.04 0.00 0.02 0599 ATC ATT ILE(I) ILE(I) 019994 02274 SYNON C 0.96 1.00 0.98 T 0.04 0.00 0.02 0610 AGC AGT SER(S) SER(S) 020016 02296 NON-SYN C 1.00 0.98 0.99 G 0.00 0.02 0.01 0618 CCC GCC PRO(P) ALA(A) 020038 02318 NON-SYN G 0.92 1.00 0.96 A 0.08 0.00 0.04 0625 CGT CAT ARG(R) HIS(H) 020175 00000 ------------ T 0.90 1.00 0.95 C 0.10 0.00 0.05 0000 --- --- --- --- 020224 00000 ------------ C 1.00 0.89 0.95 G 0.00 0.11 0.05 0000 --- --- --- --- 020342 00000 ------------ C 0.88 1.00 0.94 T 0.12 0.00 0.06 0000 --- --- --- --- 020818 00000 ------------ G 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 021201 00000 ------------ C 0.88 1.00 0.94 T 0.12 0.00 0.06 0000 --- --- --- --- 021248 00000 ------------ - 0.94 1.00 0.97 + 0.06 0.00 0.03 0000 --- --- --- --- 021505 00000 ------------ - 0.00 0.02 0.01 + 1.00 0.98 0.99 0000 --- --- --- --- 021576 00000 ------------ A 0.75 0.93 0.84 G 0.25 0.07 0.16 0000 --- --- --- --- 021663 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 021834 00000 ------------ C 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 021895 00000 ------------ A 0.75 0.93 0.84 G 0.25 0.07 0.16 0000 --- --- --- --- 022335 02662 NON-SYN G 0.96 1.00 0.98 A 0.04 0.00 0.02 0740 GAA AAA GLU(E) LYS(K) 022821 00000 ------------ A 0.92 1.00 0.96 G 0.08 0.00 0.04 0000 --- --- --- --- 023029 02724 SYNON C 0.75 0.50 0.63 T 0.25 0.50 0.37 0760 GGC GGT GLY(G) GLY(G) 023220 00000 ------------ G 1.00 0.95 0.98 A 0.00 0.05 0.02 0000 --- --- --- --- 023227 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 023283 00000 ------------ C 0.76 0.75 0.76 G 0.24 0.25 0.24 0000 --- --- --- --- 023528 00000 ------------ C 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 023636 00000 ------------ G 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 023951 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 024254 00000 ------------ A 0.98 0.93 0.96 C 0.02 0.07 0.04 0000 --- --- --- --- 024328 00000 ------------ A 0.96 0.91 0.94 T 0.04 0.09 0.06 0000 --- --- --- --- 024558 02952 SYNON T 0.94 1.00 0.97 C 0.06 0.00 0.03 0836 GAT GAC ASP(D) ASP(D) 024836 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 025038 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 025045 00000 ------------ T 0.85 1.00 0.93 A 0.15 0.00 0.07 0000 --- --- --- --- 025159 00000 ------------ C 0.93 1.00 0.97 T 0.07 0.00 0.03 0000 --- --- --- --- 025160 00000 ------------ G 0.85 1.00 0.92 A 0.15 0.00 0.08 0000 --- --- --- --- 025165 00000 ------------ C 0.93 1.00 0.97 T 0.07 0.00 0.03 0000 --- --- --- --- 025395 03143 NON-SYN C 0.72 0.93 0.83 T 0.28 0.07 0.17 0900 GCG GTG ALA(A) VAL(V) 025504 00000 ------------ A 0.60 0.67 0.64 G 0.40 0.33 0.36 0000 --- --- --- --- 025646 00000 ------------ C 0.92 1.00 0.96 T 0.08 0.00 0.04 0000 --- --- --- --- 025659 00000 ------------ C 0.88 1.00 0.94 T 0.12 0.00 0.06 0000 --- --- --- --- 025878 00000 ------------ A 0.98 0.63 0.81 G 0.02 0.37 0.19 0000 --- --- --- --- 025891 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 026166 00000 ------------ G 0.71 0.59 0.65 T 0.29 0.41 0.35 0000 --- --- --- --- 026259 00000 ------------ C 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 027609 00000 ------------ T 0.85 0.93 0.89 C 0.15 0.07 0.11 0000 --- --- --- --- 028391 00000 ------------ C 0.87 0.93 0.90 T 0.13 0.07 0.10 0000 --- --- --- --- 028411 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 028979 00000 ------------ C 0.85 0.93 0.89 T 0.15 0.07 0.11 0000 --- --- --- --- 029119 00000 ------------ G 0.94 1.00 0.97 C 0.06 0.00 0.03 0000 --- --- --- --- 029130 00000 ------------ C 0.96 1.00 0.98 G 0.04 0.00 0.02 0000 --- --- --- --- 029164 00000 ------------ C 0.98 0.63 0.80 G 0.02 0.37 0.20 0000 --- --- --- --- 029439 03354 SYNON C 1.00 0.93 0.97 T 0.00 0.07 0.03 0970 GTC GTT VAL(V) VAL(V) 029473 03388 NON-SYN G 1.00 0.98 0.99 A 0.00 0.02 0.01 0982 GGG AGG GLY(G) ARG(R) 030344 00000 ------------ C 0.95 1.00 0.98 T 0.05 0.00 0.02 0000 --- --- --- --- 030392 00000 ------------ G 0.93 1.00 0.97 T 0.07 0.00 0.03 0000 --- --- --- --- 030459 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 030461 00000 ------------ G 1.00 0.87 0.93 C 0.00 0.13 0.07 0000 --- --- --- --- 030527 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 032011 00000 ------------ C 0.97 1.00 0.99 G 0.03 0.00 0.01 0000 --- --- --- --- 032201 00000 ------------ G 0.97 1.00 0.99 A 0.03 0.00 0.01 0000 --- --- --- --- 032251 00000 ------------ G 0.97 1.00 0.99 A 0.03 0.00 0.01 0000 --- --- --- --- 033510 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 033555 00000 ------------ T 0.65 0.65 0.65 C 0.35 0.35 0.35 0000 --- --- --- --- 033775 00000 ------------ G 0.98 0.72 0.85 C 0.02 0.28 0.15 0000 --- --- --- --- 034001 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 034076 03541 NON-SYN G 1.00 0.93 0.97 A 0.00 0.07 0.03 1033 GCT ACT ALA(A) THR(T) 034129 03594 SYNON G 0.96 1.00 0.98 A 0.04 0.00 0.02 1050 GTG GTA VAL(V) VAL(V) 034150 03615 SYNON G 0.96 1.00 0.98 A 0.04 0.00 0.02 1057 GCG GCA ALA(A) ALA(A) 034616 00000 ------------ G 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 034875 00000 ------------ T 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 035430 00000 ------------ C 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 035786 04121 NON-SYN C 0.98 1.00 0.99 T 0.02 0.00 0.01 1226 ACC ATC THR(T) ILE(I) 035861 00000 ------------ T 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 035967 00000 ------------ G 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 036073 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 036088 00000 ------------ G 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 036282 04290 SYNON G 0.96 1.00 0.98 A 0.04 0.00 0.02 1282 GTG GTA VAL(V) VAL(V) 036371 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 036487 00000 ------------ G 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 036954 00000 ------------ A 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 037016 00000 ------------ C 0.69 0.93 0.81 T 0.31 0.07 0.19 0000 --- --- --- --- 037130 00000 ------------ A 0.96 1.00 0.98 G 0.04 0.00 0.02 0000 --- --- --- --- 037735 00000 ------------ T 1.00 0.93 0.97 C 0.00 0.07 0.03 0000 --- --- --- --- 038119 00000 ------------ C 1.00 0.87 0.94 A 0.00 0.13 0.06 0000 --- --- --- --- 038241 00000 ------------ G 0.62 0.85 0.73 A 0.38 0.15 0.27 0000 --- --- --- --- 038313 00000 ------------ T 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 038332 00000 ------------ G 0.71 0.57 0.64 C 0.29 0.43 0.36 0000 --- --- --- --- 038365 00000 ------------ A 0.96 1.00 0.98 G 0.04 0.00 0.02 0000 --- --- --- --- 038726 04665 SYNON C 0.98 0.73 0.86 A 0.02 0.27 0.14 1407 ACC ACA THR(T) THR(T) 038926 04865 3' UTR T 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 039121 00000 ------------ T 1.00 0.95 0.98 C 0.00 0.05 0.02 0000 --- --- --- --- NOTE: AD-freq: African Descent frequency ED-freq: European Descent frequency NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 006413: T 007412: A 008166: C 012588: G 015978: TCAGTGTGG 021248: A 021505: T The following site(s) was observed to have three alleles. The frequency for each allele is given below: Site Allele1 AD-freq ED-freq Total-freq Allele2 AD-freq ED-freq Total-freq Allele3 AD-freq ED-freq Total-freq 009775 A 0.17 0.00 0.09 C 0.81 1.00 0.90 G 0.02 0.00 0.01