Site Allele1 AD-pop ED-pop Total-pop Allele2 AD-pop ED-pop Total-pop 000127 G 2 0 2 A 46 46 92 000198 G 0 1 1 C 48 45 93 000221 T 8 3 11 C 40 43 83 000223 A 8 0 8 G 40 46 86 000614 G 7 18 25 A 41 28 69 000731 A 2 0 2 G 46 46 92 000860 C 3 0 3 A 45 46 91 001365 A 0 1 1 G 48 45 93 001514 A 1 0 1 G 47 46 93 001691 C 3 1 4 T 45 45 90 001880 T 1 0 1 C 47 46 93 002066 T 2 4 6 C 46 42 88 002418 G 5 0 5 C 41 46 87 002631 T 1 0 1 C 45 46 91 003185 A 1 0 1 G 47 46 93 003280 A 0 1 1 G 48 45 93 003413 T 1 17 18 C 47 29 76 003455 T 3 0 3 C 45 46 91 003714 G 1 3 4 C 45 41 86 003776 G 9 0 9 A 37 44 81 003795 C 1 0 1 G 45 44 89 003807 G 1 0 1 A 45 44 89 003856 T 3 0 3 C 43 44 87 003858 T 8 17 25 C 38 27 65 003877 A 0 1 1 G 46 43 89 003907 T 0 1 1 C 46 43 89 004464 T 15 3 18 C 33 43 76 004586 G 1 0 1 C 47 46 93 004913 C 3 0 3 T 45 46 91 005091 C 4 0 4 T 44 46 90 005156 A 0 1 1 G 48 45 93 005278 T 4 0 4 C 44 46 90 005547 T 19 21 40 C 29 21 50 005770 A 0 1 1 G 48 45 93 005845 T 0 1 1 C 46 45 91 005953 G 0 1 1 T 46 45 91 006023 A 2 0 2 G 44 46 90 006078 A 1 17 18 G 45 29 74 006105 T 1 16 17 A 45 30 75 006413 - 5 17 22 + 43 29 72 006505 T 1 17 18 G 47 29 76 006659 A 1 0 1 G 47 46 93 006926 A 0 3 3 G 48 43 91 007214 G 12 3 15 A 36 43 79 007412 - 21 23 44 + 27 23 50 007452 G 0 1 1 T 48 45 93 007550 C 5 17 22 T 43 29 72 007664 T 1 0 1 C 47 46 93 007792 G 5 0 5 C 43 46 89 007857 G 1 0 1 C 47 46 93 008166 + 2 0 2 - 46 46 92 009374 C 4 2 6 T 44 42 86 009655 T 2 0 2 C 46 46 92 009717 T 1 3 4 C 47 43 90 009775 * 009943 C 2 0 2 G 46 46 92 010019 G 3 0 3 T 45 44 89 012365 A 0 1 1 G 48 45 93 012581 A 4 0 4 G 44 46 90 012588 - 28 6 34 + 20 40 60 012597 A 1 0 1 C 41 34 75 013215 C 14 19 33 G 34 21 55 013244 T 0 1 1 C 48 39 87 015978 - 1 16 17 + 45 28 73 016228 C 3 0 3 T 43 44 87 016231 A 0 3 3 G 46 41 87 016304 T 2 0 2 C 46 46 92 016387 T 1 0 1 C 47 46 93 016468 G 1 17 18 C 47 29 76 016494 T 2 0 2 G 46 46 92 016496 T 0 1 1 C 48 45 93 016694 A 0 1 1 G 48 45 93 016920 T 1 17 18 G 47 29 76 016936 T 12 3 15 C 36 43 79 017083 T 4 3 7 C 44 43 87 017169 C 1 17 18 T 47 29 76 017248 G 1 0 1 A 47 46 93 017609 G 1 17 18 C 47 29 76 017672 A 1 0 1 G 47 46 93 017739 C 1 17 18 T 47 29 76 018131 A 2 0 2 G 46 46 92 018150 T 1 0 1 C 47 46 93 018270 A 2 3 5 G 46 43 89 018374 C 1 16 17 G 47 30 77 018479 C 0 1 1 T 48 43 91 018623 T 17 23 40 A 31 23 54 018718 C 12 3 15 G 36 43 79 018983 G 13 23 36 A 33 23 56 019069 A 3 0 3 G 43 46 89 019214 C 1 16 17 G 47 30 77 019351 C 2 0 2 T 46 44 90 019498 C 12 3 15 T 36 41 77 019729 T 1 0 1 C 47 46 93 019761 G 1 16 17 A 47 30 77 019923 G 0 1 1 A 48 45 93 019925 A 14 23 37 G 34 23 57 019961 T 2 0 2 C 46 46 92 019994 T 2 0 2 C 46 46 92 020016 G 0 1 1 C 48 45 93 020038 A 4 0 4 G 44 46 90 020175 C 5 0 5 T 43 46 89 020224 G 0 5 5 C 48 41 89 020342 T 6 0 6 C 42 46 88 020818 T 1 0 1 G 47 46 93 021201 T 6 0 6 C 42 46 88 021248 + 3 0 3 - 45 46 91 021505 - 0 1 1 + 48 45 93 021576 G 12 3 15 A 36 43 79 021663 A 1 0 1 G 47 46 93 021834 T 0 1 1 C 48 43 91 021895 G 12 3 15 A 36 41 77 022335 A 2 0 2 G 46 44 90 022821 G 4 0 4 A 44 46 90 023029 T 12 23 35 C 36 23 59 023220 A 0 2 2 G 46 42 88 023227 T 2 0 2 C 44 44 88 023283 G 11 11 22 C 35 33 68 023528 G 1 0 1 C 47 44 91 023636 C 1 0 1 G 47 44 91 023951 A 2 0 2 G 46 46 92 024254 C 1 3 4 A 47 43 90 024328 T 2 4 6 A 46 42 88 024558 C 3 0 3 T 45 46 91 024836 A 1 0 1 G 45 46 91 025038 A 1 0 1 G 47 46 93 025045 A 7 0 7 T 41 46 87 025159 T 3 0 3 C 43 46 89 025160 A 7 0 7 G 39 46 85 025165 T 3 0 3 C 43 46 89 025395 T 13 3 16 C 33 43 76 025504 G 19 15 34 A 29 31 60 025646 T 4 0 4 C 44 46 90 025659 T 6 0 6 C 42 46 88 025878 G 1 17 18 A 47 29 76 025891 T 1 0 1 C 47 46 93 026166 T 14 18 32 G 34 26 60 026259 G 1 0 1 C 47 44 91 027609 C 7 3 10 T 41 43 84 028391 T 6 3 9 C 40 43 83 028411 A 0 1 1 G 46 45 91 028979 T 7 3 10 C 39 43 82 029119 C 3 0 3 G 45 46 91 029130 G 2 0 2 C 46 46 92 029164 G 1 17 18 C 45 29 74 029439 T 0 3 3 C 46 43 89 029473 A 0 1 1 G 46 45 91 030344 T 2 0 2 C 40 46 86 030392 T 3 0 3 G 39 46 85 030459 A 1 0 1 G 45 46 91 030461 C 0 6 6 G 46 40 86 030527 A 2 0 2 G 44 46 90 032011 G 1 0 1 C 37 40 77 032201 A 1 0 1 G 39 40 79 032251 A 1 0 1 G 39 40 79 033510 G 1 0 1 A 45 46 91 033555 C 16 16 32 T 30 30 60 033775 C 1 13 14 G 47 33 80 034001 C 1 0 1 T 47 46 93 034076 A 0 3 3 G 48 43 91 034129 A 2 0 2 G 46 42 88 034150 A 2 0 2 G 46 42 88 034616 T 2 0 2 G 46 46 92 034875 C 2 0 2 T 46 46 92 035430 T 0 1 1 C 48 43 91 035786 T 1 0 1 C 47 46 93 035861 C 2 0 2 T 46 46 92 035967 T 2 0 2 G 46 46 92 036073 A 1 0 1 G 47 46 93 036088 T 2 0 2 G 46 46 92 036282 A 2 0 2 G 46 46 92 036371 C 1 0 1 T 47 46 93 036487 C 1 0 1 G 47 46 93 036954 T 2 0 2 A 46 46 92 037016 T 15 3 18 C 33 43 76 037130 G 2 0 2 A 46 46 92 037735 C 0 3 3 T 48 43 91 038119 A 0 6 6 C 48 40 88 038241 A 18 7 25 G 30 39 69 038313 A 0 1 1 T 48 45 93 038332 C 14 20 34 G 34 26 60 038365 G 2 0 2 A 46 46 92 038726 A 1 12 13 C 45 32 77 038926 C 2 0 2 T 46 44 90 039121 C 0 2 2 T 48 42 90 Note: AD: African_Descent ED: European_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 006413: t 007412: A 008166: C 012588: g 015978: tcagtgtgg 021248: a 021505: t Tri-allelic sites: Site Allele1 AD-pop ED-pop Total-pop Allele2 AD-pop ED-pop Total-pop Allele3 AD-pop ED-pop Total-pop 009775 G 1 0 1 A 8 0 8 C 39 46 85