************************************************************* **** **** **** Output from PHASE v2.0 **** **** Code by M Stephens, with contributions from N Li **** **** **** ************************************************************* BEGIN COMMAND_LINE /usr/local/genome/lib/phase/PHASE2 -d1 abcg2.phase.inp abcg2.phase.out END COMMAND_LINE BEGIN OUTFILE_LIST abcg2.phase.out_freqs : haplotype frequency estimates abcg2.phase.out_pairs : most likely haplotype pairs for each individual abcg2.phase.out_recom : estimates of recombination parameters abcg2.phase.out_monitor : file for monitoring convergence END OUTFILE_LIST BEGIN INPUT_SUMMARY Number of Individuals: 47 Number of Loci: 71 Positions of loci: 279 324 413 1005 1035 2339 2801 17123 17144 17740 17874 18362 18483 19212 19440 19650 19815 19965 20460 20948 20974 21808 21906 22439 22638 27058 27393 28761 29402 30152 30727 38091 38230 38243 38767 42098 42484 45291 45374 46529 46880 47496 48066 53249 53887 54185 59365 60021 60042 60960 61289 61602 61906 62000 62112 62804 63162 63431 63528 63825 64029 64656 64658 64946 65553 65871 66565 67199 70306 71599 72079 END INPUT_SUMMARY List of haplotypes found in best reconstruction, with counts. (See file abcg2.phase.out_freqs for haplotype population frequency estimates) BEGIN LIST_SUMMARY 1 ADCIAGGAGTTCICATGGGTACGTTCACAGTGDCAAATGACGCTGCACAGGCACAATTDIAATCTATCTCC 1.000000 2 ADCIAGGAGTTCICATGGGTACGTTCACAGTGDCAAAAAACGCACCACAGGCACGATTDIAATCTGTCTCC 3.000000 3 ADCIAGGAGTTCICATGGGTACGTTCACAGTGDCAAAAAACGCTGCACAGGCACAATTDIAATCTATCTCC 1.000000 4 ADCIAGGAGTTCICATTGATACGTTTACCGCCDCAAATGACGGACTGCGGACATGATTDIAATCCGTCTCC 1.000000 5 ADCIAGGAGTTCICATTGATACGTTTACCGCCDCAAATGACGGACTGCGGACATGATTDDAATCCGTCTCC 4.000000 6 ADCIAGGAGTTCICATTGATACGTTTACCGCCDCAAATGACGGACTGTGGGCATGATTDIAATTCGTTTCC 1.000000 7 ADCIAGGAGTTCICATTGATACGTTTACCGCCDCAAATGACGGACTGTGGGCATGATTDIAATTCGATTCC 1.000000 8 ADCIAGGAGTTCICATTGATACGTTTACCGCCDCAAATAACCCACCACAGGCACGACTDDAATCTATCTCC 1.000000 9 ADCIAGGAGTTCICATTGATACGTTTACCGCCDCAAAAAACCCACCACAGGCACGACTDIAATCTATCTCC 5.000000 10 ADCIAGGAGTTCICATTGATACGTTTACCGCCDCAAAAAACCCACCACAGGCACGACTDDAATCTATCTCC 1.000000 11 ADCIAGGAGTTCICATTGATACGTTTACCGCCDCAAAAAACCCTGCACAGGCACAATTDIAATCTATCTCC 3.000000 12 ADCIAGGAGTTCICATTGGTACGTTTACCGCCDCAAAAGACGCACTGTGGGCATGATTDIAATTCGATTCC 1.000000 13 ADCIAGGGGTGCICATGGGCGCGCTTACCGTCDCAAATGACGCACTGCGGATATGATTIIAATCCGTCCTT 1.000000 14 ADCIAGGGTTTCICATTGATACGTTTACCGCCDCAAATAACCCACCACAGGCACGACTDIAATCTATCTCC 1.000000 15 ADCDAAGAGTTCICATTGATACGTTTACCGCCDCAAATGACGGACTACAGGCACGATTDIAATCTATCTCC 4.000000 16 ADCDAAGAGCGCICATGGGCGCGCTTACCGTCDCAAATGACGCACTGTGGGCATGATTIIAATTCGTCTCC 1.000000 17 ADCDAAGAGCGCDACCGGGTACGTCTACCGTCIAAAATGGCGCTGCACAGGCACAATTDIAATCTATCTCC 4.000000 18 ADCDAAGATTGCICATTGGTACATTTACCGTCDCAGAAGACGCACCACAGGCACGACTDIAATCTATCTCC 2.000000 19 ADCDAAGATCGCICCTGGGTACGTTTACCGTCDCAGAAGACGCACTGCGGATATGATTIIAATCCGTCCTT 1.000000 20 ADCDAAGATCGCICCTGGGTATGTTTACCGTCDCAAATGACGCACTGTGGGCATGATTDIAATTCGATTCC 1.000000 21 ADCDAAGATCGTDACCGGGTATGTTTGCCGTCDCGAATGAGGCACTGCGGATATGATTIIAATCCGTCCTT 3.000000 22 ADCDAAGGGCGCICCTGGGTATGTTTACCGTCDCAAATGACGCACTGTGGGCATGATTDIAATTCGATTCC 1.000000 23 ADCDAAGGTTGTDACCGGGTATGTTTACCGCCDCAAATGACGGACTGCAAGCGTGGTCDIGGGCCGTCTCC 1.000000 24 ADCDAAGGTTGTDACCGGGTATGTTTGCCGTCDCGAATGAGGCACTGCAAGCGTGGTCDIGGGCCGTCTCC 1.000000 25 ADCDAAGGTTGTDACCGGGTATGTTTGCCGTCDCGAATGAGGCACTACAGGCACGATTDIAATCTATCTCC 3.000000 26 ADCDAAGGTTGTDACCGGGTATGTTTGCCGTCDCGAGTGAGGCACTGTGGGCATGATTDIAATTCGATTCC 4.000000 27 ADCDAAGGTTTCICATTAATACGTTTATCGCCDCAAATGACGGACTGTGGGCATGATTDIAATTCGATTCC 5.000000 28 ADCDAAGGTTTCICATTAATACGTTTATCGCCDCAAATGAGGGACTGTGGGCATGATTDIAATTCGATTCC 2.000000 29 ADCDAAGGTCGCICCTGGGCGCGCTTACCGTCDCAAATGACGCACTGTGGGCATGATTDIAATTCGTTTCC 4.000000 30 ADCDAAAAGTGTDACCGGGTATGTTTACCGCCDCAAATGACGGACTGCAAGCGTGGTCDIGGGCCGTCTCC 1.000000 31 ADCDAAAGTTGTDACCGGGTATGTTTGCCGTCDCGAAAAACCCACTGCAAGCGTGGTCDIGGGCCGTCTCC 1.000000 32 ADCDAAAGTTTTICATTAATACGTTTATCGCCDCAAATGACGGACTGTGGGCATGATTDIAATTCGATTCC 1.000000 33 ADCDAGGGTTGTDACCGGGTATGTTTGCCGTCDCGAATAACCCACTGCAAGCGTGGTCDIGGGCCGTCTCC 1.000000 34 ADCDGAGAGTTCICATTGATACGTTTACCGCCDCAAAAAACGCACCACAGGCACGACTDIAATCTATCTCC 1.000000 35 ADCDGAGATTGCICATTGGTACATTTACCGTCDCAGAAGACGCACCACAGGCACGACTDIAATCTATCTCC 4.000000 36 ADCDGAGATTGCICATTGGTACATTTACCATCDCAGAAGACGCACCACAGGCACGACTDIAATCTATCTCC 5.000000 37 ADCDGAGATTGCICATTGGTACATTTACCATCDCAGAAGACGCTGCACAGGCACAATTDIAATCTATCTCC 1.000000 38 ADTDAAGGTTGTDACCGGGTATGTTTACCGCCDCAAATGACGGACCACAGGCACGACTDIAATCTATCTCC 1.000000 39 ADTDAAGGTTGTDACCGGGTATGTTTGCCGTCDCGAGTGAGGCACTGCAAGCGTGGTCDIGGGCCGTCTCC 3.000000 40 ADTDAAGGTTGTDACCGGGTATGTTTGCCGTCDCGAGTGAGGCACTGTGGGCATGATTDIAATTCGATTCC 1.000000 41 GDCDAAAAGTGTDACCGGGTATGTTTGCCGTCDCGAATGAGGCACTACAGGCACGATTDIAATCTATCTTC 1.000000 42 GDCDAAAGTCGCICATGGGCGCGCTTACCGTCDCAAATGACGGACTACAGGCACGACTDIAATCTATCTCC 1.000000 43 GICDAAAGTCGCDACCGGGTACGTCTACCGTCIAAAATGGCGCACCACAGGCACGACTDIAATCTATCTCC 2.000000 44 GICDAAAGTCGCDACCGGGTACGTCTACCGTCIAAAATGGCGCTGCACAGGCACAATTDIAATCTATCTCC 8.000000 END LIST_SUMMARY Summary of best reconstruction (numbers refer to the list of haplotypes given above) BEGIN BESTPAIRS_SUMMARY DY01: (5,26) DY02: (4,21) DY03: (5,21) DY04: (5,25) DY05: (25,29) DY06: (20,25) DY07: (24,33) DY08: (19,41) DY09: (13,27) DY10: (26,28) DY11: (12,15) DY12: (29,31) DY13: (26,27) DY14: (27,32) DY15: (7,30) DY16: (16,29) DY17: (39,40) DY18: (5,23) DY19: (6,29) DY20: (27,42) DY21: (27,39) DY22: (22,26) DY23: (21,28) DY24: (38,39) E101: (14,43) E102: (44,44) E103: (17,44) E104: (9,36) E105: (9,11) E106: (3,36) E107: (2,10) E108: (2,43) E109: (15,36) E110: (35,37) E111: (2,35) E112: (9,11) E113: (36,44) E114: (9,11) E115: (8,17) E116: (44,44) E117: (18,35) E118: (18,44) E119: (15,35) E120: (17,44) E121: (1,15) E122: (17,34) E123: (9,36) END BESTPAIRS_SUMMARY Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in []: BEGIN BESTPAIRS1 0 DY01 A D C I A G G A G T T C I C A T T G A T A C G T T T A C C G C C D C A A A T G A C G G A C T G C G G A C A T G A T T D D A A T C C G T C T C C A D C D A A G G T T G T D A C C G G G T A T G T T T G C C G T C D C G A G T G A G G C A C T G T G G G C A T G A T T D I A A T T C G A T T C C 0 DY02 A D C I A G G A G T T C I C A T T G A T A C G T T T A C C G C C D C A A A T G A C G G A C T G C G G A C A T G A T T D I A A T C C G T C T C C A D C D A A G A T C G T D A C C G G G T A T G T T T G C C G T C D C G A A T G A G G C A C T G C G G A T A T G A T T I I A A T C C G T C C T T 0 DY03 A D C I A G G A G T T C I C A T T G A T A C G T T T A C C G C C D C A A A T G A C G G A C T G C G G A C A T G A T T D D A A T C C G T C T C C A D C D A A G A T C G T D A C C G G G T A T G T T T G C C G T C D C G A A T G A G G C A C T G C G G A T A T G A T T I I A A T C C G T C C T T 0 DY04 A D C I A G G A G T T C I C A T T G A T A C G T T T A C C G C C D C A A A T G A C G G A C T G C G G A C A T G A T T D D A A T C C G T C T C C A D C D A A G G T T G T D A C C G G G T A T G T T T G C C G T C D C G A A T G A G G C A C T A C A G G C A [C] G A T T D I A A T C T A T C T C C 0 DY05 A D C D A A G G T T G T D A C C G G G T A T G T T T G C C G T C D C G A A T G A G G C A C T A C A G G C A [C] G A T T D I A A T C T A T C T C C A D C D A A G G T C G C I C C T G G G C G C G C T T A C C G T C D C A A A T G A C G C A C T G T G G G C A T G A T T D I A A T T C G T T T C C 0 DY06 A D C D A A G (A) T C G C I C C T G G G T A T G T T T A C C G T C D C A A A T G A C G C A C T G T G G G C A T G A T T D I A A T T C G A T T C C A D C D A A G (G) T T G T D A C C G G G T A T G T T T G C C G T C D C G A A T G A G G C A C T A C A G G C A [C] G A T T D I A A T C T A T C T C C 0 DY07 A D C D A (A) G G T T G T D A C C G G G T A T G T T T G C C G T C D C G A A T G A G G C A C T G C A A G C G T G G T C D I G G G C C G T C T C C A D C D A (G) G G T T G T D A C C G G G T A T G T T T G C C G T C D C G A A T A A C C C A C T G C A A G C G T G G T C D I G G G C C G T C T C C 0 DY08 (A) D C D A A (G) A (T) C G C I C C T G G G T A (C) G T T T A C C G T C D C A G A A G A C G C A C T G C G G A T A T G A T T I I A A T C C G T C C T T (G) D C D A A (A) A (G) T G T D A C C G G G T A (T) G T T T G C C G T C D C G A A T G A G G C A C T A C A G G C A C G A T T D I A A T C T A T C T T C 0 DY09 A D C (I) A (G) G G (G) T G C I C A T G G G C G C G C T T A C C G T C D C A A A T G A C G C A C T G C G G A T A T G A T T I I A A T C C G T C C T T A D C (D) A (A) G G (T) T T C I C A T T A A T A C G T T T A T C G C C D C A A A T G A C G G A C T G T G G G C A T G A T T D I A A T T C G A T T C C 0 DY10 A D C D A A G G T T G T D A C C G G G T A T G T T T G C C G T C D C G A G T G A G G C A C T G T G G G C A T G A T T D I A A T T C G A T T C C A D C D A A G G T T T C I C A T T A A T A C G T T T A T C G C C D C A A A T G A G G G A C T G T G G G C A T G A T T D I A A T T C G A T T C C 0 DY11 A D C I A G G A G T T C I C A T T G (G) T A C G T T T A C C G C C D C A A A A G A C G C A C T G T G G G C A T G A T T D I A A T T C G A T T C C A D C D A A G A G T T C I C A T T G (A) T A C G T T T A C C G C C D C A A A T G A C G G A C T A C A G G C A C G A T T D I A A T C T A T C T C C 0 DY12 A D C D A A (G) G T C G C I C C T G G G C G C G C T T A C C G T C D C A A A (T) G A C G C A C T G T G G G C A T G A T T D I A A T T C G T T T C C A D C D A A (A) G T T G T D A C C G G G T A T G T T T G C C G T C D C G A A (A) A A C C C A C T G C A A G C G T G G T C D I G G G C C G T C T C C 0 DY13 A D C D A A G G T T G T D A C C G G G T A T G T T T G C C G T C D C G A G T G A G G C A C T G T G G G C A T G A T T D I A A T T C G A T T C C A D C D A A G G T T T C I C A T T A A T A C G T T T A T C G C C D C A A A T G A C G G A C T G T G G G C A T G A T T D I A A T T C G A T T C C 0 DY14 A D C D A A (G) G T T T C I C A T T A A T A C G T T T A T C G C C D C A A A T G A C G G A C T G T G G G C A T G A T T D I A A T T C G A T T C C A D C D A A (A) G T T T T I C A T T A A T A C G T T T A T C G C C D C A A A T G A C G G A C T G T G G G C A T G A T T D I A A T T C G A T T C C 0 DY15 A D C (I) A (G) (G) A G T T C I C A T T G A T A C G T T T A C C G C C D C A A A T G A C G G A C T G T G G G C A T G A T T D I A A T T C G A T T C C A D C (D) A (A) (A) A G T G T D A C C G G G T A T G T T T A C C G C C D C A A A T G A C G G A C T G C A A G C G T G G T C D I G G G C C G T C T C C 0 DY16 A D C D A A G (A) (G) C G C I C (A) T G G G C G C G C T T A C C G T C D C A A A T G A C G C A C T G T G G G C A T G A T T (I) I A A T T C G T (C) T C C A D C D A A G (G) (T) C G C I C (C) T G G G C G C G C T T A C C G T C D C A A A T G A C G C A C T G T G G G C A T G A T T (D) I A A T T C G T (T) T C C 0 DY17 A D T D A A G G T T G T D A C C G G G T A T G T T T G C C G T C D C G A G T G A G G C A C T G C A A G C G T G G T C D I G G G C C G T C T C C A D T D A A G G T T G T D A C C G G G T A T G T T T G C C G T C D C G A G T G A G G C A C T G T G G G C A T G A T T D I A A T T C G A T T C C 0 DY18 A D C (I) A (G) G (A) (G) T T C I C A T T G A T A C G T T T A C C G C C D C A A A T G A C G G A C T G C G G A C A T G A T T D D A A T C C G T C T C C A D C (D) A (A) G (G) (T) T G T D A C C G G G T A T G T T T A C C G C C D C A A A T G A C G G A C T G C A A G C G T G G T C D I G G G C C G T C T C C 0 DY19 A D C I A G G A G T T C I C A T T G A T A C G T T T A C C G C C D C A A A T G A C G G A C T G T G G G C A T G A T T D I A A T T C G T T T C C A D C D A A G G T C G C I C C T G G G C G C G C T T A C C G T C D C A A A T G A C G C A C T G T G G G C A T G A T T D I A A T T C G T T T C C 0 DY20 (A) D C D A A (G) G T T T C I C A T T A A T A C G T T T A T C G C C D C A A A T G A C G G A C T G T G G G C A T G A T T D I A A T T C G A T T C C (G) D C D A A (A) G T C G C I C A T G G G C G C G C T T A C C G T C D C A A A T G A C G G A C T A C A G G C A C G A C T D I A A T C T A T C T C C 0 DY21 A D C D A A G G T T T C I C A T T A A T A C G T T T A T C G C C D C A A A T G A C G G A C T G T G G G C A T G A T T D I A A T T C G A T T C C A D T D A A G G T T G T D A C C G G G T A T G T T T G C C G T C D C G A G T G A G G C A C T G C A A G C G T G G T C D I G G G C C G T C T C C 0 DY22 A D C D A A G G (G) C G C I C C T G G G T A T G T T T A C C G T C D C A A A T G A C G C A C T G T G G G C A T G A T T D I A A T T C G A T T C C A D C D A A G G (T) T G T D A C C G G G T A T G T T T G C C G T C D C G A G T G A G G C A C T G T G G G C A T G A T T D I A A T T C G A T T C C 0 DY23 A D C D A A G A T C G T D A C C G G G T A T G T T T G C C G T C D C G A A T G A G G C A C T G C G G A T A T G A T T I I A A T C C G T C C T T A D C D A A G G T T T C I C A T T A A T A C G T T T A T C G C C D C A A A T G A G G G A C T G T G G G C A T G A T T D I A A T T C G A T T C C 0 DY24 A D T D A A G G T T G T D A C C G G G T A T G T T T (A) C C G (C) C D C (A) A (A) T G A (C) G (G) A C C A C A G G C A C G A C T D I A A T C T A T C T C C A D T D A A G G T T G T D A C C G G G T A T G T T T (G) C C G (T) C D C (G) A (G) T G A (G) G (C) A C T G C A A G C G T G G T C D I G G G C C G T C T C C 0 E101 (A) (D) C (I) A [G] (G) G T T T C I C A T T G A T A C G T T T A C C G C C D C A A A T A A C C C A C C A C A G G C A C G A C T D I A A T C T A T C T C C (G) (I) C (D) A A (A) G T C G C D A C C G G G T A C G T C T A C C G T C I A A A A T G G C G C A C C A C A G G C A C G A C T D I A A T C T A T C T C C 0 E102 G I C D A A A G T C G C D A C C G G G T A C G T C T A C C G T C I A A A A T G G C G C T G C A C A G G C A C A A T T D I A A T C T A T C T C C G I C D A A A G T C G C D A C C G G G T A C G T C T A C C G T C I A A A A T G G C G C T G C A C A G G C A C A A T T D I A A T C T A T C T C C 0 E103 A D C D A A G A G C G C D A C C G G G T A C G T C T A C C G T C I A A A A T G G C G C T G C A C A G G C A C A A T T D I A A T C T A T C T C C G I C D A A A G T C G C D A C C G G G T A C G T C T A C C G T C I A A A A T G G C G C T G C A C A G G C A C A A T T D I A A T C T A T C T C C 0 E104 A D C I A G G A G T T C I C A T T G A T A C G T T T A C C G C C D C A A A A A A C C C A C C A C A G G C A C G A C T D I A A T C T A T C T C C A D C D G A G A T T G C I C A T T G G T A C A T T T A C C A T C D C A G A A G A C G C A C C A C A G G C A C G A C T D I A A T C T A T C T C C 0 E105 A D C I A G G A G T T C I C A T T G A T A C G T T T A C C G C C D C A A A A A A C C C A C C A C A G G C A C G A C T D I A A T C T A T C T C C A D C I A G G A G T T C I C A T T G A T A C G T T T A C C G C C D C A A A A A A C C C T G C A C A G G C A C A A T T D I A A T C T A T C T C C 0 E106 A D C I A G G A G T T C I C A T G G G T A C G T T C A C A G T G D C A A A A A A C G C (T) (G) C A C A G G C A C (A) A (T) T D I A A T C T A T C T C C A D C D G A G A T T G C I C A T T G G T A C A T T T A C C A T C D C A G A A G A C G C (A) (C) C A C A G G C A C (G) A (C) T D I A A T C T A T C T C C 0 E107 A D C I A G G A G T T C I C A T G G G T A C G T T C A C A G T G D C A A A A A A C G C A C C A C A G G C A C G A T T D (I) A A T C T G T C T C C A D C I A G G A G T T C I C A T T G A T A C G T T T A C C G C C D C A A A A A A C C C A C C A C A G G C A C G A C T D (D) A A T C T A T C T C C 0 E108 A D C I A G G A G T T C I C A T G G G T A C G T T C A C A G T G D C A A A A A A C G C A C C A C A G G C A C G A T T D I A A T C T G T C T C C G I C D A A A G T C G C D A C C G G G T A C G T C T A C C G T C I A A A A T G G C G C A C C A C A G G C A C G A C T D I A A T C T A T C T C C 0 E109 A D C D A A G A G T T C I C A T T G A T A C G T T T A C C G C C D C A A A T G A C G G A C T A C A G G C A C G A T T D I A A T C T A T C T C C A D C D G A G A T T G C I C A T T G G T A C A T T T A C C A T C D C A G A A G A C G C A C C A C A G G C A C G A C T D I A A T C T A T C T C C 0 E110 A D C D G A G A T T G C I C A T T G G T A C A T T T A C C (G) T C D C A G A A G A C G C A C C A C A G G C A C G A C T D I A A T C T A T C T C C A D C D G A G A T T G C I C A T T G G T A C A T T T A C C (A) T C D C A G A A G A C G C T G C A C A G G C A C A A T T D I A A T C T A T C T C C 0 E111 A D C I A G G A G T T C I C A T G G G T A C G T T C A C A G T G D C A A A A A A C G C A C C A C A G G C A C G A T T D I A A T C T G T C T C C A D C D G A G A T T G C I C A T T G G T A C A T T T A C C G T C D C A G A A G A C G C A C C A C A G G C A C G A C T D I A A T C T A T C T C C 0 E112 A D C I A G G A G T T C I C A T T G A T A C G T T T A C C G C C D C A A A A A A C C C A C C A C A G G C A C G A C T D I A A T C T A T C T C C A D C I A G G A G T T C I C A T T G A T A C G T T T A C C G C C D C A A A A A A C C C T G C A C A G G C A C A A T T D I A A T C T A T C T C C 0 E113 A D C D G A G A T T G C I C A T T G G T A C A T T T A C C A T C D C A G A A G A C G C A C C A C A G G C A C G A C T D I A A T C T A T C T C C G I C D A A A G T C G C D A C C G G G T A C G T C T A C C G T C I A A A A T G G C G C T G C A C A G G C A C A A T T D I A A T C T A T C T C C 0 E114 A D C I A G G A G T T C I C A T T G A T A C G T T T A C C G C C D C A A A A A A C C C A C C A C A G G C A C G A C T D I A A T C T A T C T C C A D C I A G G A G T T C I C A T T G A T A C G T T T A C C G C C D C A A A A A A C C C T G C A C A G G C A C A A T T D I A A T C T A T C T C C 0 E115 A D C I A G G A G T T C I C A T T G A T A C G T T T A C C G C C D C A A A T A A C C C A C C A C A G G C A C G A C T D (D) A A T C T A T C T C C A D C D A A G A G C G C D A C C G G G T A C G T C T A C C G T C I A A A A T G G C G C T G C A C A G G C A C A A T T D (I) A A T C T A T C T C C 0 E116 G I C D A A A G T C G C D A C C G G G T A C G T C T A C C G T C I A A A A T G G C G C T G C A C A G G C A C A A T T D I A A T C T A T C T C C G I C D A A A G T C G C D A C C G G G T A C G T C T A C C G T C I A A A A T G G C G C T G C A C A G G C A C A A T T D I A A T C T A T C T C C 0 E117 A D C D A A G A T T G C I C A T T G G T A C A T T T A C C G T C D C A G A A G A C G C A C C A C A G G C A C G A C T D I A A T C T A T C T C C A D C D G A G A T T G C I C A T T G G T A C A T T T A C C G T C D C A G A A G A C G C A C C A C A G G C A C G A C T D I A A T C T A T C T C C 0 E118 A D C D A A G A T T G C I C A T T G G T A C A T T T A C C G T C D C A G A A G A C G C A C C A C A G G C A C G A C T D I A A T C T A T C T C C G I C D A A A G T C G C D A C C G G G T A C G T C T A C C G T C I A A A A T G G C G C T G C A C A G G C A C A A T T D I A A T C T A T C T C C 0 E119 A D C D A A G A G T T C I C A T T G A T A C G T T T A C C G C C D C A A A T G A C G G A C T A C A G G C A C G A T T D I A A T C T A T C T C C A D C D G A G A T T G C I C A T T G G T A C A T T T A C C G T C D C A G A A G A C G C A C C A C A G G C A C G A C T D I A A T C T A T C T C C 0 E120 A D C D A A G A G C G C D A C C G G G T A C G T C T A C C G T C I A A A A T G G C G C T G C A C A G G C A C A A T T D I A A T C T A T C T C C G I C D A A A G T C G C D A C C G G G T A C G T C T A C C G T C I A A A A T G G C G C T G C A C A G G C A C A A T T D I A A T C T A T C T C C 0 E121 A D C I A G G A G T T C I C A T G G G T A C G T T C A C A G T G D C A A A T G A C G C T G C A C A G G C A C A A T T D I A A T C T A T C T C C A D C D A A G A G T T C I C A T T G A T A C G T T T A C C G C C D C A A A T G A C G G A C T A C A G G C A C G A T T D I A A T C T A T C T C C 0 E122 A D C D A A G A G C G C D A C C G G G T A C G T C T A C C G T C I A A A A T G G C G C T G C A C A G G C A C A A T T D I A A T C T A T C T C C A D C D G A G A G T T C I C A T T G A T A C G T T T A C C G C C D C A A A A A A C G C A C C A C A G G C A C G A C T D I A A T C T A T C T C C 0 E123 A D C I A G G A G T T C I C A T T G A T A C G T T T A C C G C C D C A A A A A A C C C A C C A C A G G C A C G A C T D I A A T C T A T C T C C A D C D G A G A T T G C I C A T T G G T A C A T T T A C C A T C D C A G A A G A C G C A C C A C A G G C A C G A C T D I A A T C T A T C T C C END BESTPAIRS1 Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in [] with phase known positions indicated by = BEGIN BESTPAIRS2 0 DY01 = = = I ? G = A G = T C I C A T T = A = = C = = = = ? = = = C = = = A = A = = = C = G = = = = C = = A = ? = = = = = = D = = = C = = ? C = = = = = = D ? A = G T = G T D A C C G = G = = T = = = = ? = = = T = = = G = G = = = G = C = = = = T = = G = ? = = = = = = I = = = T = = ? T = = = 0 DY02 = = = I = G = = G T T C I C A T T = A = = C = = = = A = = = C = = = A = = = = ? ? = G = = = = = = = = C = = = ? = = D = = = = = ? = ? = T C C = = = D = A = = T C G T D A C C G = G = = T = = = = G = = = T = = = G = = = = ? ? = C = = = = = = = = T = = = ? = = I = = = = = ? = ? = C T T 0 DY03 = = = I = G = = G T T C I C A T T = A = = C = = = = A = = = C = = = A = = = = = C = G = = = ? = = = = C = = = = = = D D = = = = ? = = = T C C = = = D = A = = T C G T D A C C G = G = = T = = = = G = = = T = = = G = = = = = G = C = = = ? = = = = T = = = = = = I I = = = = ? = = = C T T 0 DY04 = = = I ? G = A G = T C I C A T T = A = = C = = = = ? = = = C = = = A = = = = = C = G = = = G = G = A = ? ? = = = = = D = = = = C G = = = = = = = = D ? A = G T = G T D A C C G = G = = T = = = = ? = = = T = = = G = = = = = G = C = = = A = A = G = ? ? = = = = = I = = = = T A = = = = = 0 DY05 = = = = = = = = = T = T D A = C = = = T A T = T = = ? = = = = = = = G = = = = = G = = = = = A C A = = = = ? = = = = = = = = = C T A = C = = = = = = = = = = = = C = C I C = T = = = C G C = C = = ? = = = = = = = A = = = = = C = = = = = G T G = = = = ? = = = = = = = = = T C G = T = = = 0 DY06 = = = = = = = (A) = C = C I C = T = = = ? ? = = = = = ? = = = = ? = = A = = = = = C = = = = = G T G = = = = ? ? = = = = = = = = T C G A T = = = = = = = = = = (G) = T = T D A = C = = = ? ? = = = = = ? = = = = ? = = G = = = = = G = = = = = A C A = = = = ? ? = = = = = = = = C T A T C = = = 0 DY07 = = = = = (A) = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = G = G G = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (G) = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = A = C C = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = 0 DY08 (A) = = = = = (G) = (T) C = C I C = T = = = = = (C) = = = = A = = = = = = = A G = A = ? ? = = = = = G = G ? A T = T = = = = I = = = = = ? G = = C = T (G) = = = = = (A) = (G) T = T D A = C = = = = = (T) = = = = G = = = = = = = G A = T = ? ? = = = = = A = A ? G C = C = = = = D = = = = = ? A = = T = C 0 DY09 = = = (I) = (G) = = (G) = G = = = = = G G G C G = = C = = = C = = T = = = = = = = = = = = C = = ? = C = = A T = ? ? = = = I = = = = C = = T C C T T = = = (D) = (A) = = (T) = T = = = = = T A A T A = = T = = = T = = C = = = = = = = = = = = G = = ? = T = = G C = ? ? = = = D = = = = T = = A T T C C 0 DY10 = = = = = = = = = = G T D A C C G G G = = T = = = = G C = = T = = = G = G = = = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T C I C A T T A A = = C = = = = A T = = C = = = A = A = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 DY11 = = = I ? G = = = = = = = = = = = = (G) = = = = = = = = = = = = = = = = = = A = = = = C = = = G T G = = = = T = = = = = = = = = T C G A T = = = = = = D ? A = = = = = = = = = = = = (A) = = = = = = = = = = = = = = = = = = T = = = = G = = = A C A = = = = C = = = = = = = = = C T A T C = = = 0 DY12 = = = = = = (G) = = C = C I C = T = = = C G C = C = = A = = = = = = = A = = (T) G = = G = = = = = T G G = = A = = A = T = = A A T T = = = T = = = = = = = = = (A) = = T = T D A = C = = = T A T = T = = G = = = = = = = G = = (A) A = = C = = = = = C A A = = G = = G = C = = G G G C = = = C = = = 0 DY13 = = = = = = = = = = G T D A C C G G G = = T = = = = G C = = T = = = G = ? = = = G = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T C I C A T T A A = = C = = = = A T = = C = = = A = ? = = = C = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 DY14 = = = = = = (G) = = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (A) = = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 DY15 = = = (I) ? (G) (G) = = = T C I C A T T = A = = C = = = = = = = = = = = = = = = = = = = = = = = = = T G G = = A = = A = T = = A A T T = = A T = = = = = = (D) ? (A) (A) = = = G T D A C C G = G = = T = = = = = = = = = = = = = = = = = = = = = = = = = C A A = = G = = G = C = = G G G C = = T C = = = 0 DY16 = = = = = = = (A) (G) = = = = = (A) = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (I) = = = = = = = = (C) = = = = = = = = = = (G) (T) = = = = = (C) = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (D) = = = = = = = = (T) = = = 0 DY17 = = = = = = = = = = = = = = = ? = = = = = ? ? = = = = = = = = = = = = = = ? ? ? = ? = = ? ? = C A A = = G = = G = C = = G G G C = = T C = = = = = = = = = = = = = = = = = = ? = = = = = ? ? = = = = = = = = = = = = = = ? ? ? = ? = = ? ? = T G G = = A = = A = T = = A A T T = = A T = = = 0 DY18 = = = (I) = (G) = (A) (G) = T C I C A T T = A = = C = = = = = = = = = = = = = = = = = = = = = = = = = = G G A = A ? = A = T = D A ? ? = = = = = = = = = = = (D) = (A) = (G) (T) = G T D A C C G = G = = T = = = = = = = = = = = = = = = = = = = = = = = = = = A A G = G ? = G = C = I G ? ? = = = = = = = = 0 DY19 = = = I = G = A G T T = = = A = T = A T A = = T = = = = = = C = = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = D = A = G T C G = = = C = G = G C G = = C = = = = = = T = = = = = = = = = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 DY20 (A) = = = = = (G) = = T T = = = = = T A A T A = = T = = = T = = C = = = = = = = = = = = = = = = G T G = = = = T = = T = = = = = = T C G A T = = = (G) = = = = = (A) = = C G = = = = = G G G C G = = C = = = C = = T = = = = = = = = = = = = = = = A C A = = = = C = = C = = = = = = C T A T C = = = 0 DY21 = = C = = = = = = = T C I C A T T A A = = C = = = = A T = = C = = = A = ? = = = C = G = = = = T G G = = A = = A = T = = A A T T = = A T = = = = = T = = = = = = = G T D A C C G G G = = T = = = = G C = = T = = = G = ? = = = G = C = = = = C A A = = G = = G = C = = G G G C = = T C = = = 0 DY22 = = = = = = = = (G) C = C I C = T = = = = = = = = = = A = = ? = = = = A = A = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (T) T = T D A = C = = = = = = = = = = G = = ? = = = = G = G = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 DY23 = = = = = = = A = C G T D A C C G G G = = T = = = = G C = = T = = = G = = = = = = = C = = ? = C = = A T = = = = = = I = = = = C ? = T C C T T = = = = = = = G = T T C I C A T T A A = = C = = = = A T = = C = = = A = = = = = = = G = = ? = T = = G C = = = = = = D = = = = T ? = A T T C C 0 DY24 = = = = = = = = = = = = = = = = = = = = = = = = = = (A) = = = (C) = = = (A) = (A) ? ? = (C) = (G) = = C A = = G = = A C = A C T = = A A T = T A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (G) = = = (T) = = = (G) = (G) ? ? = (G) = (C) = = T G = = A = = G T = G T C = = G G G = C G = = = = = 0 E101 (A) (D) = (I) = ? (G) = = T T = I C A T T = A = = = = = T = = = = = C = D C = = = = A A = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (G) (I) = (D) = ? (A) = = C G = D A C C G = G = = = = = C = = = = = T = I A = = = = G G = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E102 = = = = = ? = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E103 A D = = = = G A G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G I = = = = A G T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E104 = = = I A G = = G = T ? ? = = = = = A = = = G = = = = = = G C = = = = A = = A = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = D G A = = T = G ? ? = = = = = G = = = A = = = = = = A T = = = = G = = G = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E105 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = A C = = = = = = = = = G = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = T G = = = = = = = = = A = T = = = = = = = = = = = = = = 0 E106 = = = I A G = = G = T = = = = = G = = = = = G = = C = = A G = G = = = A = = A = = = = (T) (G) = = = = = = = = = (A) = (T) = = = = = = = = = = = = = = = = = D G A = = T = G = = = = = T = = = = = A = = T = = C A = C = = = G = = G = = = = (A) (C) = = = = = = = = = (G) = (C) = = = = = = = = = = = = = = 0 E107 = = = = = = = = = = = = = = = = G = G = = = = = = C = = A = T G = = = = = = = = = G = = ? = = = = = = = = = = = T = = (I) = = = = = G = = = = = = = = = = = = = = = = = = = = = T = A = = = = = = T = = C = C C = = = = = = = = = C = = ? = = = = = = = = = = = C = = (D) = = = = = A = = = = = 0 E108 A D = I = G G A G T T = I C A T = = = = = = = = T C = = A = = G D C = = = ? ? A = = = = = = = = = = = = = = = = T = = = = = = = = G = = = = = G I = D = A A G T C G = D A C C = = = = = = = = C T = = C = = C I A = = = ? ? G = = = = = = = = = = = = = = = = C = = = = = = = = A = = = = = 0 E109 = = = = A = = = G = T = = = = = = = A = = = G = = = = = = G C = = = = A = T = = = = G = = T = = = = = = = = = = T = = = = = = = = = = = = = = = = = = G = = = T = G = = = = = = = G = = = A = = = = = = A T = = = = G = A = = = = C = = C = = = = = = = = = = C = = = = = = = = = = = = = = 0 E110 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (G) = = = = = = = = = = = = = A C = = = = = = = = = G = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (A) = = = = = = = = = = = = = T G = = = = = = = = = A = T = = = = = = = = = = = = = = 0 E111 = = = I A G = = G = T = = = = = G = = = = = G = = C = = A = = G = = = A = = A = = = = = = = = = = = = = = = = = T = = = = = = = = G = = = = = = = = D G A = = T = G = = = = = T = = = = = A = = T = = C = = C = = = G = = G = = = = = = = = = = = = = = = = = C = = = = = = = = A = = = = = 0 E112 ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = A C = = = = = = = = = G = C = = = = = = = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T G = = = = = = = = = A = T = = = = = = = = = = = = = = 0 E113 A D = = G = G A = T = = I C A T T = = = = = A = T = = = = A = = D C = G ? A = A = = = A C = = = = = = = = = G = C = = = = = = = = = = = = = = G I = = A = A G = C = = D A C C G = = = = = G = C = = = = G = = I A = A ? T = G = = = T G = = = = = = = = = A = T = = = = = = = = = = = = = = 0 E114 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = A C = = = = = = = = = G = C = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T G = = = = = = = = = A = T = = ? ? = = = = = = = = = = 0 E115 = = = I = G = = = T T = I C A T T = A = = = = = T = = = = = C = D C = = = = A A = C = A C = = = = = = = = = G = C = = (D) = = = = = = = = = = = = = = D = A = = = C G = D A C C G = G = = = = = C = = = = = T = I A = = = = G G = G = T G = = = = = = = = = A = T = = (I) = = = = = = = = = = = 0 E116 = = = = = = = ? ? = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E117 = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E118 A D = = = ? G A = T = = I C A T T = = ? ? = A ? ? = = = = = = = D C = G ? ? ? A = = ? A C = = = = ? = = = = G = C = = = = ? ? = = = = = = = = G I = = = ? A G = C = = D A C C G = = ? ? = G ? ? = = = = = = = I A = A ? ? ? G = = ? T G = = = = ? = = = = A = T = = = = ? ? = = = = = = = = 0 E119 = = = = A = = = G = T = = = = = = = A = = = G = = = = = = = C = = = = A = T = = = = G = = T = = = = = = = = = = T = = ? ? = = = ? = = = = = = = = = = G = = = T = G = = = = = = = G = = = A = = = = = = = T = = = = G = A = = = = C = = C = = = = = = = = = = C = = ? ? = = = ? = = = = = = 0 E120 A D = = = = G A G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G I = = = = A G T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E121 = = = I = G = = = = = = = = = = G = G = = = = = = C = = A = T G = = = = ? = = = = = C T G C = = = = = = = = A = = = = = = = = = = = = = = ? = = = = D = A = = = = = = = = = = T = A = = = = = = T = = C = C C = = = = ? = = = = = G A C T = = = = = = = = G = = = = = = = = = = = = = = ? = 0 E122 = = = = A = = = = C G = D A C C G = G = = = = = C = ? = = = T = I A = = = T G G = = = T G = = = = = = = = = A = T = = = = = = = = = = = = = = = = = = G = = = = T T = I C A T T = A = = = = = T = ? = = = C = D C = = = A A A = = = A C = = = = = = = = = G = C = = = = = = = = = = = = = = 0 E123 = = = I A ? = = G = T = = = = = = = A = = = G = = = = = = G C = = = = A = ? ? = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = D G ? = = T = G = = = = = = = G = = = A = = = = = = A T = = = = G = ? ? = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = END BESTPAIRS2 Phase probabilities at each site with phase known positions indicated by = and missing data positions indicated by ? BEGIN PHASEPROBS = = = 1.00 ? 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 = = = = ? = = = 1.00 = = = 1.00 = 1.00 = = = 1.00 = 1.00 = = = = 1.00 = = 1.00 = ? = = = = = = 1.00 = = = 1.00 = = ? 1.00 = = = = = = 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 = = = = 1.00 = = = 1.00 = = = 1.00 = = = = ? ? = 1.00 = = = = = = = = 1.00 = = = ? = = 1.00 = = = = = ? = ? = 1.00 1.00 1.00 = = = 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 = = = = 1.00 = = = 1.00 = = = 1.00 = = = = = 1.00 = 1.00 = = = ? = = = = 1.00 = = = = = = 1.00 1.00 = = = = ? = = = 1.00 1.00 1.00 = = = 1.00 ? 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 = = = = ? = = = 1.00 = = = 1.00 = = = = = 1.00 = 1.00 = = = 1.00 = 1.00 = 1.00 = ? ? = = = = = 1.00 = = = = 1.00 1.00 = = = = = = = = = = = = = = 1.00 = 1.00 1.00 1.00 = 1.00 = = = 1.00 1.00 1.00 = 1.00 = = ? = = = = = = = 1.00 = = = = = 1.00 = = = = = 1.00 1.00 1.00 = = = = ? = = = = = = = = = 1.00 1.00 1.00 = 1.00 = = = = = = = = = = 0.84 = 1.00 = 1.00 1.00 1.00 = 1.00 = = = ? ? = = = = = ? = = = = ? = = 1.00 = = = = = 1.00 = = = = = 1.00 1.00 1.00 = = = = ? ? = = = = = = = = 1.00 1.00 1.00 1.00 1.00 = = = = = = = = 0.61 = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = 1.00 1.00 = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = 0.63 = = = = = 0.75 = 0.79 1.00 = 1.00 1.00 1.00 = 1.00 = = = = = 0.64 = = = = 1.00 = = = = = = = 1.00 1.00 = 1.00 = ? ? = = = = = 1.00 = 1.00 ? 1.00 1.00 = 1.00 = = = = 1.00 = = = = = ? 1.00 = = 1.00 = 1.00 = = = 0.67 = 0.67 = = 0.86 = 0.98 = = = = = 1.00 1.00 1.00 1.00 1.00 = = 1.00 = = = 1.00 = = 1.00 = = = = = = = = = = = 1.00 = = ? = 0.98 = = 0.98 0.98 = ? ? = = = 0.98 = = = = 0.98 = = 0.98 0.98 0.98 0.98 0.98 = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 = = = = 1.00 1.00 = = 1.00 = = = 1.00 = 1.00 = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.98 ? 0.98 = = = = = = = = = = = = 0.51 = = = = = = = = = = = = = = = = = = 0.94 = = = = 0.97 = = = 1.00 1.00 1.00 = = = = 1.00 = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = 0.69 = = 1.00 = 1.00 1.00 1.00 = 1.00 = = = 1.00 1.00 1.00 = 1.00 = = 1.00 = = = = = = = 1.00 = = 0.54 1.00 = = 1.00 = = = = = 1.00 1.00 1.00 = = 1.00 = = 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 = = = 1.00 = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 = = = = 1.00 1.00 = = 1.00 = = = 1.00 = ? = = = 1.00 = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.57 = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.55 ? 0.55 0.54 = = = 0.98 0.98 0.98 0.98 0.98 0.98 0.98 = 0.98 = = 0.98 = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = = 1.00 = = 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 = = 1.00 1.00 = = = = = = = = = = 0.71 0.71 = = = = = 0.88 = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.82 = = = = = = = = 0.82 = = = = = = = = = = = = = = = = = = ? = = = = = ? ? = = = = = = = = = = = = = = ? ? ? = ? = = ? ? = 1.00 1.00 1.00 = = 1.00 = = 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 = = 1.00 1.00 = = = = = = 0.85 = 0.85 = 0.86 0.86 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = 1.00 ? = 1.00 = 1.00 = 1.00 1.00 ? ? = = = = = = = = = = = 0.98 = 0.98 = 1.00 1.00 1.00 1.00 = = = 1.00 = 1.00 = 1.00 1.00 1.00 = = 1.00 = = = = = = 1.00 = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.66 = = = = = 0.61 = = 0.91 0.91 = = = = = 0.91 0.91 0.91 0.91 0.91 = = 0.91 = = = 0.91 = = 0.91 = = = = = = = = = = = = = = = 0.91 0.91 0.91 = = = = 0.91 = = 0.91 = = = = = = 0.91 0.91 0.91 0.91 0.91 = = = = = 0.99 = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 = = = = 1.00 1.00 = = 1.00 = = = 1.00 = ? = = = 1.00 = 1.00 = = = = 1.00 1.00 1.00 = = 1.00 = = 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 = = 1.00 1.00 = = = = = = = = = = = 0.72 1.00 = 1.00 1.00 1.00 = 1.00 = = = = = = = = = = 1.00 = = ? = = = = 1.00 = 1.00 = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 = = = = 1.00 1.00 = = 1.00 = = = 1.00 = = = = = = = 1.00 = = ? = 1.00 = = 1.00 1.00 = = = = = = 1.00 = = = = 1.00 ? = 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = 0.54 = = = 0.54 = = = 0.54 = 0.54 ? ? = 0.54 = 0.54 = = 1.00 1.00 = = 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 = = 1.00 1.00 1.00 = 1.00 1.00 = = = = = 0.87 0.87 = 0.87 = ? 0.87 = = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = = = 1.00 = = = = = 1.00 = 1.00 1.00 = = = = 1.00 1.00 = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = = 1.00 = 1.00 ? ? = = = = = 1.00 = = = 1.00 = = = = = = 1.00 1.00 = = = = 1.00 = = 1.00 = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = 1.00 1.00 = = = = = = = = = 1.00 = 1.00 = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = = 1.00 = 1.00 = = = = = 1.00 = = = = = 1.00 = = 1.00 = = 1.00 1.00 = 1.00 = = = 1.00 = = 1.00 = = = = 0.81 0.81 = = = = = = = = = 0.81 = 0.81 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = 1.00 = = = = = = 1.00 = = 1.00 = 1.00 1.00 = = = = = = = = = 1.00 = = ? = = = = = = = = = = = 1.00 = = 0.70 = = = = = 1.00 = = = = = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = = = = = = = = 1.00 1.00 = = 1.00 = = 1.00 1.00 1.00 = = = ? ? 1.00 = = = = = = = = = = = = = = = = 1.00 = = = = = = = = 1.00 = = = = = = = = = 1.00 = = = 1.00 = 1.00 = = = = = = = 1.00 = = = 1.00 = = = = = = 1.00 1.00 = = = = 1.00 = 1.00 = = = = 1.00 = = 1.00 = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.60 = = = = = = = = = = = = = 1.00 1.00 = = = = = = = = = 1.00 = 1.00 = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = = 1.00 = 1.00 = = = = = 1.00 = = = = = 1.00 = = 1.00 = = 1.00 = = 1.00 = = = 1.00 = = 1.00 = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = 1.00 = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = = = = = = = 1.00 = 1.00 = = = = = = = = = = = = = = 1.00 1.00 = = 1.00 = 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 = = = = = 1.00 = 1.00 = = = = 1.00 = = 1.00 1.00 = 1.00 ? 1.00 = 1.00 = = = 0.94 0.94 = = = = = = = = = 0.94 = 0.94 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = = = = = = = 1.00 = 1.00 = = ? ? = = = = = = = = = = = = = 0.99 = 0.99 = = = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = = = 1.00 = = = = = 1.00 = 1.00 1.00 = = = = 1.00 1.00 = 1.00 = 1.00 1.00 = = = = = = = = = 1.00 = 1.00 = = 0.81 = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = ? 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 = = ? ? = 1.00 ? ? = = = = = = = 1.00 1.00 = 1.00 ? ? ? 1.00 = = ? 0.99 0.99 = = = = ? = = = = 0.99 = 0.99 = = = = ? ? = = = = = = = = = = = = 0.99 = = = 1.00 = 1.00 = = = = = = = 1.00 = = = 1.00 = = = = = = = 1.00 = = = = 1.00 = 1.00 = = = = 1.00 = = 1.00 = = = = = = = = = = 1.00 = = ? ? = = = ? = = = = = = 1.00 1.00 = = = = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = 1.00 = = = = = = = = = = 1.00 = 1.00 = = = = = = 1.00 = = 1.00 = 1.00 1.00 = = = = ? = = = = = 0.98 0.98 0.98 0.98 = = = = = = = = 0.98 = = = = = = = = = = = = = = ? = = = = = 0.94 = = = = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = = = 1.00 = ? = = = 1.00 = 1.00 1.00 = = = 1.00 1.00 1.00 = = = 0.97 0.97 = = = = = = = = = 0.97 = 0.97 = = = = = = = = = = = = = = = = = 1.00 1.00 ? = = 1.00 = 1.00 = = = = = = = 1.00 = = = 1.00 = = = = = = 1.00 1.00 = = = = 1.00 = ? ? = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = END PHASEPROBS