Site Genotype1 AD-pop ED-pop Total-pop Genotype2 AD-pop ED-pop Total-pop Genotype3 AD-pop ED-pop Total-pop AD-chi2 ED-chi2 Total-chi2 000539 CC 0 0 0 CT 1 0 1 TT 23 23 46 0.011 0.000 0.005 000568 CC 23 23 46 CG 1 0 1 GG 0 0 0 0.011 0.000 0.005 000739 AA 8 0 8 AG 10 4 14 GG 6 19 25 0.621 0.209 4.651 000790 AA 10 19 29 AG 11 4 15 GG 3 0 3 0.000 0.209 0.303 000857 CC 0 0 0 CT 1 0 1 TT 23 23 46 0.011 0.000 0.005 001059 AA 0 0 0 AT 1 0 1 TT 22 21 43 0.011 0.000 0.006 001150 CC 22 21 43 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 001199 CC 19 21 40 CT 4 0 4 TT 0 0 0 0.209 0.000 0.100 001577 CC 0 0 0 CT 1 0 1 TT 23 23 46 0.011 0.000 0.005 001660 AA 0 0 0 AG 0 1 1 GG 24 22 46 0.000 0.011 0.005 001720 CC 0 0 0 CG 1 0 1 GG 23 23 46 0.011 0.000 0.005 001831 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 002121 CC 0 0 0 CG 0 1 1 GG 23 22 45 0.000 0.011 0.006 002268 -- 0 0 0 +- 3 0 3 ++ 20 23 43 0.112 0.000 0.052 002405 AA 0 0 0 AG 1 0 1 GG 21 23 44 0.012 0.000 0.006 002665 CC 21 23 44 CG 1 0 1 GG 0 0 0 0.012 0.000 0.006 003125 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 003320 AA 0 0 0 AG 0 1 1 GG 24 21 45 0.000 0.012 0.006 003581 CC 0 3 3 CT 0 11 11 TT 23 9 32 0.000 0.016 1.957 003978 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 004070 AA 0 0 0 AG 0 1 1 GG 20 22 42 0.000 0.011 0.006 004507 CC 0 0 0 CT 1 0 1 TT 18 22 40 0.014 0.000 0.006 004566 CC 19 22 41 CT 1 0 1 TT 0 0 0 0.013 0.000 0.006 004605 -- 20 22 42 +- 4 1 5 ++ 0 0 0 0.198 0.011 0.148 004606 AA 15 22 37 AT 9 1 10 TT 0 0 0 1.278 0.011 0.666 005183 CC 24 22 46 CT 0 1 1 TT 0 0 0 0.000 0.011 0.005 005197 CC 0 0 0 CT 1 0 1 TT 23 23 46 0.011 0.000 0.005 005272 CC 0 0 0 CT 4 7 11 TT 20 16 36 0.198 0.741 0.826 005514 AA 23 23 46 AG 1 0 1 GG 0 0 0 0.011 0.000 0.005 005597 CC 24 21 45 CT 0 1 1 TT 0 0 0 0.000 0.012 0.006 005608 GG 0 0 0 GT 1 0 1 TT 23 22 45 0.011 0.000 0.006 005643 CC 23 22 45 CG 1 0 1 GG 0 0 0 0.011 0.000 0.006 005746 AA 0 0 0 AG 1 0 1 GG 22 22 44 0.011 0.000 0.006 006026 AA 24 22 46 AC 0 1 1 CC 0 0 0 0.000 0.011 0.005 006281 AA 0 3 3 AG 0 11 11 GG 24 9 33 0.000 0.016 2.074 006305 CC 0 0 0 CT 4 0 4 TT 20 23 43 0.198 0.000 0.093 006410 CC 0 0 0 CT 0 1 1 TT 23 19 42 0.000 0.013 0.006 007702 AA 20 23 43 AG 1 0 1 GG 0 0 0 0.012 0.000 0.006 007734 AA 22 8 30 AG 0 11 11 GG 0 3 3 0.000 0.065 1.725 007864 CC 0 0 0 CT 4 0 4 TT 20 23 43 0.198 0.000 0.093 008026 AA 0 0 0 AG 0 1 1 GG 24 22 46 0.000 0.011 0.005 008592 AA 0 0 0 AC 1 0 1 CC 23 22 45 0.011 0.000 0.006 008670 AA 0 0 0 AC 0 1 1 CC 24 20 44 0.000 0.012 0.006 008842 AA 23 22 45 AT 1 0 1 TT 0 0 0 0.011 0.000 0.006 009441 CC 20 19 39 CT 3 0 3 TT 0 0 0 0.112 0.000 0.058 009686 CC 19 21 40 CT 3 0 3 TT 0 0 0 0.118 0.000 0.056 009689 CC 0 0 0 CT 1 0 1 TT 21 21 42 0.012 0.000 0.006 009815 GG 22 18 40 GT 0 5 5 TT 0 0 0 0.000 0.342 0.156 010697 AA 0 0 0 AG 4 0 4 GG 18 23 41 0.220 0.000 0.097 010725 AA 0 0 0 AG 0 1 1 GG 24 22 46 0.000 0.011 0.005 010841 AA 23 23 46 AG 1 0 1 GG 0 0 0 0.011 0.000 0.005 011169 AA 0 0 0 AG 0 1 1 GG 23 21 44 0.000 0.012 0.006 011467 AA 23 23 46 AC 1 0 1 CC 0 0 0 0.011 0.000 0.005 011661 AA 23 23 46 AG 1 0 1 GG 0 0 0 0.011 0.000 0.005 011925 AA 23 22 45 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 012992 CC 0 0 0 CT 1 0 1 TT 22 23 45 0.011 0.000 0.006 013069 AA 0 0 0 AT 0 1 1 TT 24 22 46 0.000 0.011 0.005 013268 -- 0 0 0 +- 1 0 1 ++ 23 23 46 0.011 0.000 0.005 013777 AA 0 0 0 AG 3 0 3 GG 21 23 44 0.107 0.000 0.051 013808 AA 22 23 45 AG 2 0 2 GG 0 0 0 0.045 0.000 0.022 014111 CC 18 18 36 CT 3 0 3 TT 0 0 0 0.124 0.000 0.062 014674 CC 0 0 0 CT 1 0 1 TT 19 23 42 0.013 0.000 0.006 014857 AA 0 0 0 AT 0 1 1 TT 20 18 38 0.000 0.014 0.007 015323 AA 0 0 0 AC 1 0 1 CC 21 22 43 0.012 0.000 0.006 015787 AA 0 0 0 AG 2 0 2 GG 20 22 42 0.050 0.000 0.024 016095 GG 0 0 0 GT 7 0 7 TT 16 22 38 0.741 0.000 0.320 016193 CC 19 23 42 CT 4 0 4 TT 0 0 0 0.209 0.000 0.095 016644 AA 20 9 29 AT 0 11 11 TT 0 3 3 0.000 0.016 1.610 016744 CC 0 0 0 CG 1 0 1 GG 22 23 45 0.011 0.000 0.006 016995 CC 0 0 0 CT 3 0 3 TT 17 23 40 0.131 0.000 0.056 017049 GG 20 20 40 GT 1 0 1 TT 0 0 0 0.012 0.000 0.006 017077 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 017481 CC 0 0 0 CT 1 0 1 TT 22 23 45 0.011 0.000 0.006 018418 AA 0 0 0 AG 4 0 4 GG 19 23 42 0.209 0.000 0.095 018769 AA 0 0 0 AG 1 1 2 GG 23 21 44 0.011 0.012 0.023 019223 CC 0 0 0 CT 0 1 1 TT 24 22 46 0.000 0.011 0.005 019701 AA 0 0 0 AG 0 4 4 GG 19 16 35 0.000 0.247 0.114 020328 CC 0 0 0 CT 2 0 2 TT 21 22 43 0.048 0.000 0.023 020485 AA 21 22 43 AC 1 0 1 CC 0 0 0 0.012 0.000 0.006 020962 GG 0 0 0 GT 1 0 1 TT 23 21 44 0.011 0.000 0.006 021231 -- 0 3 3 +- 0 9 9 ++ 24 8 32 0.000 0.032 3.369 021820 -- 0 0 0 +- 2 0 2 ++ 20 22 42 0.050 0.000 0.024 022115 AA 22 21 43 AG 0 1 1 GG 0 0 0 0.000 0.012 0.006 022248 AA 0 0 0 AG 0 1 1 GG 24 22 46 0.000 0.011 0.005 022262 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 022596 AA 24 22 46 AG 0 1 1 GG 0 0 0 0.000 0.011 0.005 022696 AA 0 0 0 AG 1 0 1 GG 22 22 44 0.011 0.000 0.006 022758 CC 22 8 30 CT 0 10 10 TT 0 2 2 0.000 0.196 0.857 023239 AA 23 23 46 AG 1 0 1 GG 0 0 0 0.011 0.000 0.005 023313 -- 0 0 0 +- 2 0 2 ++ 22 23 45 0.045 0.000 0.022 023805 AA 23 22 45 AC 1 0 1 CC 0 0 0 0.011 0.000 0.006 023890 AA 0 0 0 AC 4 0 4 CC 20 23 43 0.198 0.000 0.093 024059 AA 23 22 45 AT 1 0 1 TT 0 0 0 0.011 0.000 0.006 024072 -- 24 21 45 +- 0 1 1 ++ 0 0 0 0.000 0.012 0.006 024093 AA 22 21 43 AG 2 0 2 GG 0 0 0 0.045 0.000 0.023 024827 CC 0 0 0 CG 0 5 5 GG 24 18 42 0.000 0.342 0.148 025568 CC 0 0 0 CT 1 0 1 TT 22 23 45 0.011 0.000 0.006 026775 AA 22 23 45 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 026799 CC 21 23 44 CT 3 0 3 TT 0 0 0 0.107 0.000 0.051 026907 AA 0 0 0 AC 2 0 2 CC 22 23 45 0.045 0.000 0.022 026926 -- 0 0 0 +- 1 0 1 ++ 22 23 45 0.011 0.000 0.006 028141 AA 22 22 44 AT 1 0 1 TT 0 0 0 0.011 0.000 0.006 028150 CC 0 0 0 CT 1 1 2 TT 22 21 43 0.011 0.012 0.023 028316 AA 23 23 46 AG 1 0 1 GG 0 0 0 0.011 0.000 0.005 028520 CC 19 23 42 CT 4 0 4 TT 0 0 0 0.209 0.000 0.095 029010 AA 19 23 42 AT 4 0 4 TT 0 0 0 0.209 0.000 0.095 029391 CC 19 23 42 CT 4 0 4 TT 0 0 0 0.209 0.000 0.095 029953 AA 0 0 0 AG 0 1 1 GG 22 22 44 0.000 0.011 0.006 030316 AA 0 0 0 AT 1 0 1 TT 23 23 46 0.011 0.000 0.005 030505 AA 0 0 0 AG 4 6 10 GG 16 15 31 0.247 0.583 0.791 030936 CC 0 3 3 CT 0 11 11 TT 20 8 28 0.000 0.065 1.497 030965 GG 17 20 37 GT 3 0 3 TT 0 0 0 0.131 0.000 0.061 030991 AA 0 0 0 AG 1 0 1 GG 19 22 41 0.013 0.000 0.006 031200 CC 20 23 43 CG 1 0 1 GG 0 0 0 0.012 0.000 0.006 031703 AA 0 0 0 AG 1 0 1 GG 18 17 35 0.014 0.000 0.007 032165 CC 20 22 42 CG 2 0 2 GG 0 0 0 0.050 0.000 0.024 032304 AA 0 0 0 AG 1 0 1 GG 22 21 43 0.011 0.000 0.006 032742 -- 23 23 46 +- 1 0 1 ++ 0 0 0 0.011 0.000 0.005 032885 CC 0 0 0 CT 2 0 2 TT 21 22 43 0.048 0.000 0.023 033021 AA 22 22 44 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 033556 -- 23 21 44 +- 1 0 1 ++ 0 0 0 0.011 0.000 0.006 033890 CC 24 21 45 CT 0 1 1 TT 0 0 0 0.000 0.012 0.006 034097 -- 20 22 42 +- 4 0 4 ++ 0 0 0 0.198 0.000 0.095 034440 -- 0 0 0 +- 3 0 3 ++ 20 23 43 0.112 0.000 0.052 034502 CC 24 21 45 CG 0 2 2 GG 0 0 0 0.000 0.048 0.022 Note: AD: African_Descent ED: European_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 002268: AACCTGCTGGAGAGG 004605: a 013268: GT 021231: gcagtattactgtagt 021820: tt 023313: tata 024072: T 026926: gtat 032742: A 033556: aata 034097: tgat 034440: tg